NP-MRD: Showing NP-Card for 2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium (NP0330833)

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Record Information

Version

1.0

Created at

2022-09-12 16:34:45 UTC

Updated at

2022-09-12 16:34:45 UTC

NP-MRD ID

NP0330833

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium

Description

2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium is found in Abutilon theophrasti, Acacia dealbata, Eleocharis sphacelata, Ephedra chilensis, Ginkgo biloba, Hamamelis virginiana, Koenigia coriaria, Lathyrus cicera, Lathyrus clymenum, Lavandula angustifolia, Lotus pedunculatus, Matthiola incana, Pinus halepensis, Rhododendron rubiginosum, Salix caprea, Salix pentandra, Sempervivum tectorum, Solanum melongena, Vaccinium myrtillus and Vicia faba.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 34  0  0  0  0  0  0  0  0999 V2000
   -5.5455    1.6591    1.1241 O   0  0  0  0  0  1  0  0  0  0  0  0
   -4.2695    1.1994    0.8138 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1355    1.8285    1.2252 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2212    2.9949    1.9982 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8997    1.3274    0.8877 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7791    0.1769    0.1251 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4042   -0.2528   -0.1657 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6098    0.4549    0.2988 O   0  0  0  0  0  3  0  0  0  0  0  0
    1.8575    0.1612    0.0986 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8623    0.9738    0.6327 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1902    0.6727    0.4273 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1842    1.4848    0.9612 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6014   -0.4235   -0.3010 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6118   -1.2248   -0.8277 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0126   -2.3248   -1.5585 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2681   -0.9339   -0.6290 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2709   -1.7186   -1.1446 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0553   -1.3562   -0.8986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0224   -2.1723   -1.4352 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8962   -0.4634   -0.2939 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1407    0.0608    0.0590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2659   -0.6365   -0.3976 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1178    3.3481    2.2363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0029    1.8713    1.2438 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5405    1.8410    1.2089 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9372    2.3045    1.5055 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6540   -0.6277   -0.4410 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4718   -3.0089   -2.0095 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5338   -2.5799   -1.7166 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8170   -2.9863   -1.9755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8610   -1.3697   -0.8943 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1723   -0.2802   -0.1575 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 11  1  0
 11 10  2  0
 10  9  1  0
  9  8  2  0
  8  7  1  0
  7 18  2  0
 18 19  1  0
 18 17  1  0
 17 16  2  0
 16 14  1  0
 14 15  1  0
 14 13  2  0
  7  6  1  0
  6  5  2  0
  5  3  1  0
  3  4  1  0
  3  2  2  0
  2  1  1  0
  2 21  1  0
 21 22  1  0
 21 20  2  0
 13 11  1  0
 20  6  1  0
 16  9  1  0
 12 26  1  0
 10 25  1  0
 19 30  1  0
 17 29  1  0
 15 28  1  0
 13 27  1  0
  5 24  1  0
  4 23  1  0
 22 32  1  0
 20 31  1  0
M  CHG  2   1  -1   8   1
M  END


  Mrv1652309122218342D          

 22 24  0  0  0  0            999 V2000
   -2.1434    1.2375    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 O   0  3  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
  9 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
  7 18  2  0  0  0  0
 18 19  1  0  0  0  0
  6 20  1  0  0  0  0
 20 21  2  0  0  0  0
  2 21  1  0  0  0  0
 21 22  1  0  0  0  0
M  CHG  2   1  -1   8   1
M  END
> <DATABASE_ID>
NP0330833

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=CC2=[O+]C(=C(O)C=C2C(O)=C1)C1=CC(O)=C([O-])C(O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H10O7/c16-7-3-9(17)8-5-12(20)15(22-13(8)4-7)6-1-10(18)14(21)11(19)2-6/h1-5H,(H5-,16,17,18,19,20,21)

> <INCHI_KEY>
JKHRCGUTYDNCLE-UHFFFAOYSA-N

> <FORMULA>
C15H10O7

> <MOLECULAR_WEIGHT>
302.238

> <EXACT_MASS>
302.042652662

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
28.671148897865507

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1lambda4-chromen-1-ylium

> <JCHEM_LOGP>
2.7659

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
6.774949095281735

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.98281104030415

> <JCHEM_PKA_STRONGEST_BASIC>
-5.871441762515588

> <JCHEM_POLAR_SURFACE_AREA>
137.35

> <JCHEM_REFRACTIVITY>
96.64429999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1lambda4-chromen-1-ylium

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  O   UNK     0      -4.001   2.310   0.000  0.00  0.00           O-1
HETATM    2  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -1.334   3.850   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.667   0.000   0.000  0.00  0.00           O+1
HETATM    9  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       8.002  -0.000   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       5.335  -4.620   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -4.001  -0.770   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   21                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   20                                                  
CONECT    7    6    8   18                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   16                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14    9   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17    7   19                                                  
CONECT   19   18                                                            
CONECT   20    6   21                                                       
CONECT   21   20    2   22                                                  
CONECT   22   21                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₁₀O₇

Average Mass

302.2380 Da

Monoisotopic Mass

302.04265 Da

IUPAC Name

2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1lambda4-chromen-1-ylium

Traditional Name

2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1lambda4-chromen-1-ylium

CAS Registry Number

Not Available

SMILES

OC1=CC2=[O+]C(=C(O)C=C2C(O)=C1)C1=CC(O)=C([O-])C(O)=C1

InChI Identifier

InChI=1S/C15H10O7/c16-7-3-9(17)8-5-12(20)15(22-13(8)4-7)6-1-10(18)14(21)11(19)2-6/h1-5H,(H5-,16,17,18,19,20,21)

InChI Key

JKHRCGUTYDNCLE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Abutilon theophrasti	LOTUS Database	35616633
Acacia dealbata	LOTUS Database	35616633
Eleocharis sphacelata	LOTUS Database	35616633
Ephedra chilensis	LOTUS Database	35616633
Ginkgo biloba	LOTUS Database	35616633
Hamamelis virginiana	LOTUS Database	35616633
Koenigia coriaria	LOTUS Database	35616633
Lathyrus cicera	LOTUS Database	35616633
Lathyrus clymenum	LOTUS Database	35616633
Lavandula angustifolia	LOTUS Database	35616633
Lotus pedunculatus	LOTUS Database	35616633
Matthiola incana	LOTUS Database	35616633
Pinus halepensis	LOTUS Database	35616633
Rhododendron rubiginosum	LOTUS Database	35616633
Salix caprea	LOTUS Database	35616633
Salix pentandra	LOTUS Database	35616633
Sempervivum tectorum	LOTUS Database	35616633
Solanum melongena	LOTUS Database	35616633
Vaccinium myrtillus	LOTUS Database	35616633
Vicia faba	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.77	ChemAxon
pKa (Strongest Acidic)	5.98	ChemAxon
pKa (Strongest Basic)	-5.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	137.35 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	96.64 m³·mol⁻¹	ChemAxon
Polarizability	28.67 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium (NP0330833)

MOL for NP0330833 (2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium)

3D MOL for NP0330833 (2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium)

3D SDF for NP0330833 (2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium)

3D-SDF for NP0330833 (2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium)

PDB for NP0330833 (2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium)

3D PDB for NP0330833 (2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium)

SMILES for NP0330833 (2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium)

INCHI for NP0330833 (2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium)

Structure for NP0330833 (2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium)

3D Structure for NP0330833 (2-(3,5-dihydroxy-4-oxidophenyl)-3,5,7-trihydroxy-1λ⁴-chromen-1-ylium)