NP-MRD: Showing NP-Card for 5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole (NP0330466)

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Record Information

Version

1.0

Created at

2022-09-12 15:50:50 UTC

Updated at

2022-09-12 15:50:51 UTC

NP-MRD ID

NP0330466

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole

Description

5-Methoxy-5-(prop-2-en-1-yl)-4,5-dihydro-2H-1,3-benzodioxole belongs to the class of organic compounds known as 1,3-dioxoles. These are organic compounds containing 1,3-dioxole, an aliphatic five-member ring with two oxygen atoms in ring positions 1 and 3 and a double bond. 5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole is found in Smyrnium galaticum. Based on a literature review very few articles have been published on 5-methoxy-5-(prop-2-en-1-yl)-4,5-dihydro-2H-1,3-benzodioxole.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 28 29  0  0  0  0  0  0  0  0999 V2000
   -0.9866   -2.8038   -0.1511 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7329   -1.6778   -0.7852 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5950   -0.5004   -0.5121 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8331    0.6684    0.0340 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7261    1.7002    0.2593 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4131    2.1697   -0.8148 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3284    0.2542    1.3850 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9054   -0.0406    1.6657 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9199    0.0182    0.6282 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5518    0.3740   -0.5834 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2910    1.0951   -0.8753 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5287   -0.0396   -1.4811 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6549   -0.4415   -0.7217 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2997   -0.2383    0.6340 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3756   -3.6925   -0.3242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8150   -2.8647    0.5598 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0961   -1.6661   -1.4780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4207   -0.8021    0.1238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9601   -0.1839   -1.5338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0619    1.4654   -1.3442 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1003    2.9839   -0.4436 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7622    2.6894   -1.5626 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0870    0.2059    2.1770 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2089   -0.3373    2.6786 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0515    0.9118   -1.9154 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4442    2.1804   -0.7457 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5712    0.1135   -1.0048 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7776   -1.5416   -0.9027 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  1  0
  4  5  1  1
  4  3  1  0
  3  2  1  0
  2  1  2  3
  4 11  1  0
 11 10  1  0
 10  9  2  0
  9 14  1  0
 14 13  1  0
 13 12  1  0
  9  8  1  0
  8  7  2  0
  7  4  1  0
 12 10  1  0
  6 20  1  0
  6 21  1  0
  6 22  1  0
  3 18  1  0
  3 19  1  0
  2 17  1  0
  1 15  1  0
  1 16  1  0
 11 25  1  0
 11 26  1  0
 13 27  1  0
 13 28  1  0
  8 24  1  0
  7 23  1  0
M  END


  Mrv1652309122217512D          

 14 15  0  0  0  0            999 V2000
    5.5075    2.2809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6951    2.4242    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1648    1.7922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6345    2.7107    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1042    3.3427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  4  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
  4 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  9 14  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0330466

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1(CC=C)CC2=C(OCO2)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C11H14O3/c1-3-5-11(12-2)6-4-9-10(7-11)14-8-13-9/h3-4,6H,1,5,7-8H2,2H3

> <INCHI_KEY>
IAASINNIHGOHAD-UHFFFAOYSA-N

> <FORMULA>
C11H14O3

> <MOLECULAR_WEIGHT>
194.23

> <EXACT_MASS>
194.094294311

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
28

> <JCHEM_AVERAGE_POLARIZABILITY>
20.531060645946344

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-methoxy-5-(prop-2-en-1-yl)-4,5-dihydro-2H-1,3-benzodioxole

> <JCHEM_LOGP>
0.8933993689999997

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.063074180979621

> <JCHEM_POLAR_SURFACE_AREA>
27.69

> <JCHEM_REFRACTIVITY>
56.151100000000014

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 12-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-22         0                                  
HETATM    1  C   UNK     0      10.281   4.258   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.764   4.525   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.774   3.345   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       6.784   5.060   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       5.794   6.240   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.126   4.089   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       2.126   1.597   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    7   11                                             
CONECT    5    4    6                                                       
CONECT    6    5                                                            
CONECT    7    4    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   14                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10    4                                                       
CONECT   12   10   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13    9                                                       
MASTER        0    0    0    0    0    0    0    0   14    0   30    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₁H₁₄O₃

Average Mass

194.2300 Da

Monoisotopic Mass

194.09429 Da

IUPAC Name

5-methoxy-5-(prop-2-en-1-yl)-4,5-dihydro-2H-1,3-benzodioxole

Traditional Name

5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole

CAS Registry Number

Not Available

SMILES

COC1(CC=C)CC2=C(OCO2)C=C1

InChI Identifier

InChI=1S/C11H14O3/c1-3-5-11(12-2)6-4-9-10(7-11)14-8-13-9/h3-4,6H,1,5,7-8H2,2H3

InChI Key

IAASINNIHGOHAD-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Smyrnium galaticum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 1,3-dioxoles. These are organic compounds containing 1,3-dioxole, an aliphatic five-member ring with two oxygen atoms in ring positions 1 and 3 and a double bond.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Dioxoles

Sub Class

1,3-dioxoles

Direct Parent

1,3-dioxoles

Alternative Parents

Substituents

Meta-dioxole
Oxacycle
Ether
Dialkyl ether
Acetal
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.89	ChemAxon
pKa (Strongest Basic)	-4.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	27.69 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	56.15 m³·mol⁻¹	ChemAxon
Polarizability	20.53 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

129636699

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole (NP0330466)

MOL for NP0330466 (5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole)

3D MOL for NP0330466 (5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole)

3D SDF for NP0330466 (5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole)

3D-SDF for NP0330466 (5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole)

PDB for NP0330466 (5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole)

3D PDB for NP0330466 (5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole)

SMILES for NP0330466 (5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole)

INCHI for NP0330466 (5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole)

Structure for NP0330466 (5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole)

3D Structure for NP0330466 (5-methoxy-5-(prop-2-en-1-yl)-2,4-dihydro-1,3-benzodioxole)