Np mrd loader

Record Information
Version1.0
Created at2022-09-10 06:02:04 UTC
Updated at2022-09-10 06:02:04 UTC
NP-MRD IDNP0296450
Secondary Accession NumbersNone
Natural Product Identification
Common Nameα-bergamotene
DescriptionAlpha-bergamotene belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other. α-bergamotene is found in Ageratum conyzoides, Alpinia chinensis, Alpinia conchigera, Alpinia galanga, Aristolochia gigantea, Asarum fauriei, Asarum megacalyx, Asarum trigynum, Cannabis sativa, Castanopsis cuspidata, Citrus aurantium, Citrus bergamia, Citrus hystrix, Citrus medica, Commiphora kataf, Curcuma longa, Daucus carota, Dumortiera hirsuta, Elsholtzia blanda, Elsholtzia ciliata, Encelia canescens, Erigeron canadensis, Eupatorium cannabinum, Gossypium hirsutum, Heterotheca subaxillaris, Humulus lupulus, Mesosphaerum suaveolens, Isocoma tenuisecta, Juglans regia, Phyla nodiflora, Micromeria sinaica, Ocimum basilicum, Pectis brevipedunculata, Pelargonium endlicherianum, Perilla frutescens, Pimpinella anisum, Polygala senega, Polyscias fruticosa, Populus alba, Pulicaria arabica, Rhanterium epapposum, Salvia aurea, Santalum spicatum, Sideritis athoa, Smallanthus uvedalia, Stevia rebaudiana, Swertia japonica, Thymus longicaulis and Zanthoxylum zanthoxyloides. It was first documented in 2002 (PMID: 12562082). Alpha-bergamotene is possibly neutral (PMID: 22474938) (PMID: 23786100).
Structure
Thumb
Synonyms
ValueSource
a-BergamoteneGenerator
Α-bergamoteneGenerator
trans-alpha-BergamoteneMeSH
cis-alpha-BergamoteneMeSH
Chemical FormulaC15H24
Average Mass204.3570 Da
Monoisotopic Mass204.18780 Da
IUPAC Name2,6-dimethyl-6-(4-methylpent-3-en-1-yl)bicyclo[3.1.1]hept-2-ene
Traditional Nameα-bergamotene
CAS Registry NumberNot Available
SMILES
CC(C)=CCCC1(C)C2CC1C(C)=CC2
InChI Identifier
InChI=1S/C15H24/c1-11(2)6-5-9-15(4)13-8-7-12(3)14(15)10-13/h6-7,13-14H,5,8-10H2,1-4H3
InChI KeyYMBFCQPIMVLNIU-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Ageratum conyzoidesLOTUS Database
Alpinia chinensisLOTUS Database
Alpinia conchigeraLOTUS Database
Alpinia galangaLOTUS Database
Aristolochia giganteaLOTUS Database
Asarum faurieiLOTUS Database
Asarum megacalyxLOTUS Database
Asarum trigynumLOTUS Database
Cannabis sativaLOTUS Database
Castanopsis cuspidataLOTUS Database
Citrus aurantiumLOTUS Database
Citrus bergamiaLOTUS Database
Citrus hystrixLOTUS Database
Citrus medicaLOTUS Database
Commiphora katafLOTUS Database
Curcuma longaLOTUS Database
Daucus carotaLOTUS Database
Dumortiera hirsutaLOTUS Database
Elsholtzia blandaLOTUS Database
Elsholtzia ciliataLOTUS Database
Encelia canescensLOTUS Database
Erigeron canadensisLOTUS Database
Eupatorium cannabinumLOTUS Database
Gossypium hirsutumLOTUS Database
Heterotheca subaxillarisLOTUS Database
Humulus lupulusLOTUS Database
Hyptis suaveolensLOTUS Database
Isocoma tenuisectaLOTUS Database
Juglans regiaLOTUS Database
Lippia nodifloraLOTUS Database
Micromeria sinaicaLOTUS Database
Ocimum basilicumLOTUS Database
Pectis brevipedunculataLOTUS Database
Pelargonium endlicherianumLOTUS Database
Perilla frutescensLOTUS Database
Pimpinella anisumLOTUS Database
Polygala senegaLOTUS Database
Polyscias fruticosaLOTUS Database
Populus albaLOTUS Database
Pulicaria arabicaLOTUS Database
Rhanterium epapposumLOTUS Database
Salvia africana-luteaLOTUS Database
Santalum spicatumLOTUS Database
Sideritis athoaLOTUS Database
Smallanthus uvedaliaLOTUS Database
Stevia rebaudianaLOTUS Database
Swertia japonicaLOTUS Database
Thymus longicaulisLOTUS Database
Zanthoxylum zanthoxyloidesLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassMonoterpenoids
Direct ParentBicyclic monoterpenoids
Alternative Parents
Substituents
  • Pinane monoterpenoid
  • Bicyclic monoterpenoid
  • Branched unsaturated hydrocarbon
  • Polycyclic hydrocarbon
  • Cyclic olefin
  • Unsaturated aliphatic hydrocarbon
  • Unsaturated hydrocarbon
  • Olefin
  • Hydrocarbon
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.91ALOGPS
logP4.46ChemAxon
logS-4.5ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity68.52 m³·mol⁻¹ChemAxon
Polarizability26.38 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00048311
Chemspider IDNot Available
KEGG Compound IDC17088
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkBergamotene
METLIN IDNot Available
PubChem Compound86608
PDB IDNot Available
ChEBI ID62755
Good Scents IDNot Available
References
General References
  1. Jayaprakasha GK, Rao LJ, Sakariah KK: Chemical composition of volatile oil from Cinnamomum zeylanicum buds. Z Naturforsch C J Biosci. 2002 Nov-Dec;57(11-12):990-3. doi: 10.1515/znc-2002-11-1206. [PubMed:12562082 ]
  2. Weston RJ, Smith GJ: Sesquiterpenes from the inner bark of the silver birch and the paper birch. Nat Prod Commun. 2012 Feb;7(2):145-8. [PubMed:22474938 ]
  3. Chen Y: Analyzing blends of herbivore-induced volatile organic compounds with factor analysis: revisiting "cotton plant, Gossypium hirsutum L., defense in response to nitrogen fertilization". J Econ Entomol. 2013 Apr;106(2):1053-7. doi: 10.1603/ec12178. [PubMed:23786100 ]
  4. LOTUS database [Link]