NP-MRD: Showing NP-Card for [hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid (NP0293523)

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Record Information

Version

1.0

Created at

2022-09-10 01:34:14 UTC

Updated at

2022-09-10 01:34:14 UTC

NP-MRD ID

NP0293523

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid

Description

Guanosine 3',5'-bis(diphosphate), also known as guanosine-5',3'-tetraphosphATE or tetraphosphate, guanosine, belongs to the class of organic compounds known as purine ribonucleoside diphosphates. These are purine ribobucleotides with diphosphate group linked to the ribose moiety. Guanosine 3',5'-bis(diphosphate) is a very strong basic compound (based on its pKa). Guanosine 3',5'-bis(diphosphate) exists in all living organisms, ranging from bacteria to humans. In humans, guanosine 3',5'-bis(diphosphate) is involved in egf signalling pathway. [hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid is found in Kitasatospora aureofaciens and Streptomyces griseus. A guanosine bisphosphate having diphosphate groups at both the 3' and 5'-positions.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv0541 08131209302D          

 40 42  0  0  0  0            999 V2000
   -1.8505   -3.7149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6284   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1831   -3.2299    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6411   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0865   -2.8174    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3984   -3.4849    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6411   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3984   -2.1500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0701   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7845   -1.5229    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435   -0.0305    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556   -1.5229    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701   -0.2854    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435   -1.3654    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9115   -2.8174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556    0.9521    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9267   -7.1462    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8334   -6.4119    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1924   -6.2394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0773   -5.7579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0377   -6.2876    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5476   -4.7183    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9166   -4.3528    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9468   -5.6877    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4704   -4.6126    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8350   -3.6341    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7643   -4.5353    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1831   -2.4049    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435   -4.2695    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0991   -5.5052    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4919   -5.2480    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0129   -6.3257    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2927   -5.5029    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4317   -5.0203    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    0.6635   -4.4410    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7831   -3.9515    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4610   -3.5525    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7471   -4.2326    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4164   -2.0209    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  1  0  0  0
  6  3  1  0  0  0  0
  6  5  1  0  0  0  0
  7  4  2  0  0  0  0
  8  4  1  0  0  0  0
  9  5  1  0  0  0  0
 11 10  2  0  0  0  0
 12  2  2  0  0  0  0
 12  4  1  0  0  0  0
 13  7  1  0  0  0  0
 13 10  1  0  0  0  0
 14  8  2  0  0  0  0
 14 10  1  0  0  0  0
 15  2  1  0  0  0  0
 15  7  1  0  0  0  0
  9 15  1  1  0  0  0
  5 16  1  6  0  0  0
 17  8  1  0  0  0  0
 28  1  1  0  0  0  0
 29  3  1  0  0  0  0
 29  9  1  0  0  0  0
  6 30  1  6  0  0  0
 33 18  1  0  0  0  0
 33 19  1  0  0  0  0
 33 20  2  0  0  0  0
 33 31  1  0  0  0  0
 34 21  1  0  0  0  0
 34 22  1  0  0  0  0
 34 23  2  0  0  0  0
 34 32  1  0  0  0  0
 35 24  1  0  0  0  0
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 36 26  1  0  0  0  0
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 36 30  1  0  0  0  0
 36 32  1  0  0  0  0
  3 37  1  6  0  0  0
  5 38  1  1  0  0  0
  6 39  1  1  0  0  0
  9 40  1  6  0  0  0
M  END

     RDKit          3D

 53 55  0  0  0  0  0  0  0  0999 V2000
   -5.4957   -0.2921   -2.5963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8406   -1.2017   -2.2316 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1495   -1.8107   -1.3364 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5544   -3.0081   -0.8217 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8320   -3.6420    0.1123 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3007   -4.8549    0.5922 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6625   -3.0509    0.5429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7496   -3.4265    1.4386 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7717   -2.4886    1.5020 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0561   -1.4962    0.6378 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3379   -0.3005    0.3454 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5399   -0.3649   -0.7781 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4977    0.5280   -0.6270 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7967   -0.2781   -0.5573 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9602   -1.0201   -1.7447 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3999   -1.8970   -1.6366 P   0  0  2  0  0  5  0  0  0  0  0  0
    4.5157   -1.2149   -2.3772 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1025   -3.4242   -2.3275 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8598   -2.1534   -0.0409 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5333   -2.5008    0.0306 P   0  0  0  0  0  5  0  0  0  0  0  0
    6.2478   -1.5088   -0.8671 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0888   -2.3984    1.6230 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7315   -4.0478   -0.6096 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3125    1.2123    0.7101 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6345    2.1982    0.5570 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1584    3.7007    1.1045 P   0  0  2  0  0  5  0  0  0  0  0  0
    0.2702    3.6572    2.5448 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5240    4.7241    1.0253 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0291    4.3997    0.1265 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8081    6.0750    0.1763 P   0  0  0  0  0  5  0  0  0  0  0  0
    1.0357    6.5230    1.5999 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7928    6.4753   -0.2196 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8942    6.8711   -0.8358 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3588    0.0762    1.4611 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0384    0.5379    2.5822 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2240   -1.8344    0.0392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0072   -1.2658   -0.8940 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1157   -4.8604    1.2041 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8946   -2.5293    2.1486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9987    0.5934    0.2301 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5699    1.2571   -1.4602 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6838    0.3853   -0.4880 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7918   -0.9734    0.2923 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5068   -3.3377   -3.1080 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0771   -2.4041    1.5835 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9768   -3.9937   -1.5742 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2503    1.5341    1.1672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1731    4.3974    0.3626 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7462    7.2906   -0.7781 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1361    6.2732   -1.5827 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3118   -0.7581    1.6745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7511   -0.0221    3.3529 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6797   -0.3502   -1.2750 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 14  1  0
 14 15  1  0
 16 15  1  1
 16 18  1  0
 16 17  2  0
 16 19  1  0
 19 20  1  0
 20 22  1  0
 20 23  1  0
 20 21  2  0
 13 12  1  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  2  0
  8  7  1  0
  7 36  2  0
 36 37  1  0
 37  3  1  0
  3  2  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
 11 34  1  0
 34 35  1  0
 34 24  1  0
 24 25  1  0
 26 25  1  6
 26 28  1  0
 26 27  2  0
 26 29  1  0
 29 30  1  0
 30 32  1  0
 30 33  1  0
 30 31  2  0
 24 13  1  0
 36 10  1  0
  5  7  1  0
 13 41  1  6
 14 42  1  0
 14 43  1  0
 18 44  1  0
 22 45  1  0
 23 46  1  0
 11 40  1  6
  9 39  1  0
 37 53  1  0
  2  1  1  0
  6 38  1  0
 34 51  1  1
 35 52  1  0
 24 47  1  1
 28 48  1  0
 32 49  1  0
 33 50  1  0
M  END


  Mrv0541 08131209302D          

 40 42  0  0  0  0            999 V2000
   -1.8505   -3.7149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6284   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1831   -3.2299    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6411   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0865   -2.8174    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3984   -3.4849    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6411   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3984   -2.1500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0701   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.1435   -0.0305    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556   -1.5229    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701   -0.2854    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435   -1.3654    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9115   -2.8174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.9267   -7.1462    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8334   -6.4119    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1924   -6.2394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0773   -5.7579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0377   -6.2876    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5476   -4.7183    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9166   -4.3528    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9468   -5.6877    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.8350   -3.6341    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7643   -4.5353    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.0991   -5.5052    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.0129   -6.3257    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2927   -5.5029    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4317   -5.0203    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.7831   -3.9515    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.7471   -4.2326    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4164   -2.0209    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  1  0  0  0
  6  3  1  0  0  0  0
  6  5  1  0  0  0  0
  7  4  2  0  0  0  0
  8  4  1  0  0  0  0
  9  5  1  0  0  0  0
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 14  8  2  0  0  0  0
 14 10  1  0  0  0  0
 15  2  1  0  0  0  0
 15  7  1  0  0  0  0
  9 15  1  1  0  0  0
  5 16  1  6  0  0  0
 17  8  1  0  0  0  0
 28  1  1  0  0  0  0
 29  3  1  0  0  0  0
 29  9  1  0  0  0  0
  6 30  1  6  0  0  0
 33 18  1  0  0  0  0
 33 19  1  0  0  0  0
 33 20  2  0  0  0  0
 33 31  1  0  0  0  0
 34 21  1  0  0  0  0
 34 22  1  0  0  0  0
 34 23  2  0  0  0  0
 34 32  1  0  0  0  0
 35 24  1  0  0  0  0
 35 25  2  0  0  0  0
 35 28  1  0  0  0  0
 35 31  1  0  0  0  0
 36 26  1  0  0  0  0
 36 27  2  0  0  0  0
 36 30  1  0  0  0  0
 36 32  1  0  0  0  0
  3 37  1  6  0  0  0
  5 38  1  1  0  0  0
  6 39  1  1  0  0  0
  9 40  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0293523

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]1(COP(O)(=O)OP(O)(O)=O)O[C@@]([H])(N2C=NC3=C2NC(=N)N=C3O)[C@]([H])(O)[C@]1([H])OP(O)(=O)OP(O)(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C10H17N5O17P4/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-5(16)6(30-36(26,27)32-34(21,22)23)3(29-9)1-28-35(24,25)31-33(18,19)20/h2-3,5-6,9,16H,1H2,(H,24,25)(H,26,27)(H2,18,19,20)(H2,21,22,23)(H3,11,13,14,17)/t3-,5-,6-,9-/m1/s1

> <INCHI_KEY>
BUFLLCUFNHESEH-UUOKFMHZSA-N

> <FORMULA>
C10H17N5O17P4

> <MOLECULAR_WEIGHT>
603.1603

> <EXACT_MASS>
602.956990191

> <JCHEM_ACCEPTOR_COUNT>
17

> <JCHEM_AVERAGE_POLARIZABILITY>
44.682370831853504

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
10

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[hydroxy({[(2R,3S,4R,5R)-4-hydroxy-2-({[hydroxy(phosphonooxy)phosphoryl]oxy}methyl)-5-(6-hydroxy-2-imino-3,9-dihydro-2H-purin-9-yl)oxolan-3-yl]oxy})phosphoryl]oxy}phosphonic acid

> <ALOGPS_LOGP>
-0.50

> <JCHEM_LOGP>
-3.8688395723715896

> <ALOGPS_LOGS>
-1.77

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-5

> <JCHEM_PKA>
2.0023985451571575

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.461336498579434

> <JCHEM_PKA_STRONGEST_BASIC>
7.15370555987726

> <JCHEM_POLAR_SURFACE_AREA>
342.3300000000001

> <JCHEM_REFRACTIVITY>
118.69379999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.03e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
{hydroxy[(2R,3S,4R,5R)-4-hydroxy-2-({[hydroxy(phosphonooxy)phosphoryl]oxy}methyl)-5-(6-hydroxy-2-imino-3H-purin-9-yl)oxolan-3-yl]oxyphosphoryl}oxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 13-AUG-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-AUG-12         0                                  
HETATM    1  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   12  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   13  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   14  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   15  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   16  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   33  P   UNK     0       0.000   0.000   0.000  0.00  0.00           P+0
HETATM   34  P   UNK     0       0.000   0.000   0.000  0.00  0.00           P+0
HETATM   35  P   UNK     0       0.000   0.000   0.000  0.00  0.00           P+0
HETATM   36  P   UNK     0       0.000   0.000   0.000  0.00  0.00           P+0
HETATM   37  H   UNK     0       0.000   0.000   0.000  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.000   0.000   0.000  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.000   0.000   0.000  0.00  0.00           H+0
HETATM   40  H   UNK     0       0.000   0.000   0.000  0.00  0.00           H+0
CONECT    1    3   28                                                       
CONECT    2   12   15                                                       
CONECT    3    1    6   29   37                                             
CONECT    4    7    8   12                                                  
CONECT    5    6    9   16   38                                             
CONECT    6    3    5   30   39                                             
CONECT    7    4   13   15                                                  
CONECT    8    4   14   17                                                  
CONECT    9    5   15   29   40                                             
CONECT   10   11   13   14                                                  
CONECT   11   10                                                            
CONECT   12    2    4                                                       
CONECT   13    7   10                                                       
CONECT   14    8   10                                                       
CONECT   15    2    7    9                                                  
CONECT   16    5                                                            
CONECT   17    8                                                            
CONECT   18   33                                                            
CONECT   19   33                                                            
CONECT   20   33                                                            
CONECT   21   34                                                            
CONECT   22   34                                                            
CONECT   23   34                                                            
CONECT   24   35                                                            
CONECT   25   35                                                            
CONECT   26   36                                                            
CONECT   27   36                                                            
CONECT   28    1   35                                                       
CONECT   29    3    9                                                       
CONECT   30    6   36                                                       
CONECT   31   33   35                                                       
CONECT   32   34   36                                                       
CONECT   33   18   19   20   31                                             
CONECT   34   21   22   23   32                                             
CONECT   35   24   25   28   31                                             
CONECT   36   26   27   30   32                                             
CONECT   37    3                                                            
CONECT   38    5                                                            
CONECT   39    6                                                            
CONECT   40    9                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   84    0
END

View in JSmol

Synonyms

Value	Source
Guanosine 3'-diphosphate 5'-diphosphate	ChEBI
Guanosine 5'-diphosphate,3'-diphosphate	ChEBI
GUANOSINE-5',3'-tetraphosphATE	ChEBI
Guanosine 3'-diphosphoric acid 5'-diphosphoric acid	Generator
Guanosine 5'-diphosphoric acid,3'-diphosphoric acid	Generator
GUANOSINE-5',3'-tetraphosphoric acid	Generator
Guanosine 3',5'-bis(diphosphoric acid)	Generator
3'-Diphosphate 5'-diphosphate, guanosine	HMDB
5'-Diphosphate 3'-diphosphate, guanosine	HMDB
Guanosine tetraphosphate	HMDB
Guanosine 5'-diphosphate 3'-diphosphate	HMDB
Tetraphosphate, guanosine	HMDB
3'-Diphosphate, guanosine 5'-diphosphate	HMDB
5'-Diphosphate, guanosine 3'-diphosphate	HMDB
Guanosine 3' diphosphate 5' diphosphate	HMDB
Guanosine 5' diphosphate 3' diphosphate	HMDB

Chemical Formula

C₁₀H₁₇N₅O₁₇P₄

Average Mass

603.1603 Da

Monoisotopic Mass

602.95699 Da

IUPAC Name

{[hydroxy({[(2R,3S,4R,5R)-4-hydroxy-2-({[hydroxy(phosphonooxy)phosphoryl]oxy}methyl)-5-(6-hydroxy-2-imino-3,9-dihydro-2H-purin-9-yl)oxolan-3-yl]oxy})phosphoryl]oxy}phosphonic acid

Traditional Name

{hydroxy[(2R,3S,4R,5R)-4-hydroxy-2-({[hydroxy(phosphonooxy)phosphoryl]oxy}methyl)-5-(6-hydroxy-2-imino-3H-purin-9-yl)oxolan-3-yl]oxyphosphoryl}oxyphosphonic acid

CAS Registry Number

Not Available

SMILES

[H][C@]1(COP(O)(=O)OP(O)(O)=O)O[C@@]([H])(N2C=NC3=C2NC(=N)N=C3O)[C@]([H])(O)[C@]1([H])OP(O)(=O)OP(O)(O)=O

InChI Identifier

InChI=1S/C10H17N5O17P4/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-5(16)6(30-36(26,27)32-34(21,22)23)3(29-9)1-28-35(24,25)31-33(18,19)20/h2-3,5-6,9,16H,1H2,(H,24,25)(H,26,27)(H2,18,19,20)(H2,21,22,23)(H3,11,13,14,17)/t3-,5-,6-,9-/m1/s1

InChI Key

BUFLLCUFNHESEH-UUOKFMHZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Kitasatospora aureofaciens	LOTUS Database	35616633
Streptomyces griseus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as purine ribonucleoside diphosphates. These are purine ribobucleotides with diphosphate group linked to the ribose moiety.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Purine nucleotides

Sub Class

Purine ribonucleotides

Direct Parent

Purine ribonucleoside diphosphates

Alternative Parents

Substituents

Purine ribonucleoside 3',5'-bisphosphate
Purine ribonucleoside bisphosphate
Purine ribonucleoside diphosphate
Ribonucleoside 3'-phosphate
Pentose phosphate
Pentose-5-phosphate
Glycosyl compound
N-glycosyl compound
6-oxopurine
Hypoxanthine
Monosaccharide phosphate
Organic pyrophosphate
Imidazopyrimidine
Purine
Aminopyrimidine
Monoalkyl phosphate
Pyrimidone
Alkyl phosphate
Pyrimidine
Phosphoric acid ester
Monosaccharide
N-substituted imidazole
Organic phosphoric acid derivative
Tetrahydrofuran
Vinylogous amide
Azole
Imidazole
Heteroaromatic compound
Secondary alcohol
Organoheterocyclic compound
Azacycle
Oxacycle
Hydrocarbon derivative
Amine
Organic oxide
Organopnictogen compound
Organic oxygen compound
Alcohol
Organic nitrogen compound
Organooxygen compound
Organonitrogen compound
Primary amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

guanosine bisphosphate (CHEBI:17633 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.5	ALOGPS
logP	-3.9	ChemAxon
logS	-1.8	ALOGPS
pKa (Strongest Acidic)	1.46	ChemAxon
pKa (Strongest Basic)	7.15	ChemAxon
Physiological Charge	-5	ChemAxon
Hydrogen Acceptor Count	17	ChemAxon
Hydrogen Donor Count	10	ChemAxon
Polar Surface Area	342.33 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	118.69 m³·mol⁻¹	ChemAxon
Polarizability	44.68 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

HMDB0059638

DrugBank ID

DB04022

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

388557

KEGG Compound ID

C01228

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

439450

PDB ID

G4P

ChEBI ID

17633

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid (NP0293523)

MOL for NP0293523 ([hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid)

3D MOL for NP0293523 ([hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid)

3D SDF for NP0293523 ([hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid)

3D-SDF for NP0293523 ([hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid)

PDB for NP0293523 ([hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid)

3D PDB for NP0293523 ([hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid)

SMILES for NP0293523 ([hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid)

INCHI for NP0293523 ([hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid)

Structure for NP0293523 ([hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid)

3D Structure for NP0293523 ([hydroxy([(2r,3s,4r,5r)-4-hydroxy-3-{[hydroxy(phosphonooxy)phosphoryl]oxy}-5-(6-hydroxy-2-imino-3h-purin-9-yl)oxolan-2-yl]methoxy)phosphoryl]oxyphosphonic acid)