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Record Information
Version1.0
Created at2022-09-08 22:19:10 UTC
Updated at2022-09-08 22:19:10 UTC
NP-MRD IDNP0274801
Secondary Accession NumbersNone
Natural Product Identification
Common Name{[5-(2-amino-n-methylacetamido)-4-hydroxy-6-({7-hydroxy-5-methyl-4-oxo-3h,3ah,6h,7h,7ah-imidazo[4,5-c]pyridin-2-yl}amino)-2-(hydroxymethyl)oxan-3-yl]oxy}methanimidic acid
Description{[5-(2-Amino-N-methylacetamido)-4-hydroxy-6-({7-hydroxy-5-methyl-4-oxo-3H,3aH,4H,5H,6H,7H,7aH-imidazo[4,5-c]pyridin-2-yl}amino)-2-(hydroxymethyl)oxan-3-yl]oxy}methanimidic acid belongs to the class of organic compounds known as glycosylamines. Glycosylamines are compounds consisting of an amine with a beta-N-glycosidic bond to a carbohydrate, thus forming a cyclic hemiaminal ether bond (alpha-amino ether). {[5-(2-amino-n-methylacetamido)-4-hydroxy-6-({7-hydroxy-5-methyl-4-oxo-3h,3ah,6h,7h,7ah-imidazo[4,5-c]pyridin-2-yl}amino)-2-(hydroxymethyl)oxan-3-yl]oxy}methanimidic acid is found in Streptomyces griseus. {[5-(2-Amino-N-methylacetamido)-4-hydroxy-6-({7-hydroxy-5-methyl-4-oxo-3H,3aH,4H,5H,6H,7H,7aH-imidazo[4,5-c]pyridin-2-yl}amino)-2-(hydroxymethyl)oxan-3-yl]oxy}methanimidic acid is a very strong basic compound (based on its pKa).
Structure
Thumb
Synonyms
ValueSource
{[5-(2-amino-N-methylacetamido)-4-hydroxy-6-({7-hydroxy-5-methyl-4-oxo-3H,3ah,4H,5H,6H,7H,7ah-imidazo[4,5-c]pyridin-2-yl}amino)-2-(hydroxymethyl)oxan-3-yl]oxy}methanimidateGenerator
Chemical FormulaC17H29N7O8
Average Mass459.4600 Da
Monoisotopic Mass459.20776 Da
IUPAC Name5-(2-amino-N-methylacetamido)-4-hydroxy-6-({7-hydroxy-5-methyl-4-oxo-1H,3aH,4H,5H,6H,7H,7aH-imidazo[4,5-c]pyridin-2-yl}amino)-2-(hydroxymethyl)oxan-3-yl carbamate
Traditional Name5-(2-amino-N-methylacetamido)-4-hydroxy-6-({7-hydroxy-5-methyl-4-oxo-1H,3aH,6H,7H,7aH-imidazo[4,5-c]pyridin-2-yl}amino)-2-(hydroxymethyl)oxan-3-yl carbamate
CAS Registry NumberNot Available
SMILES
CN(C1C(O)C(OC(N)=O)C(CO)OC1NC1=NC2C(N1)C(O)CN(C)C2=O)C(=O)CN
InChI Identifier
InChI=1S/C17H29N7O8/c1-23-4-6(26)9-10(15(23)29)21-17(20-9)22-14-11(24(2)8(27)3-18)12(28)13(32-16(19)30)7(5-25)31-14/h6-7,9-14,25-26,28H,3-5,18H2,1-2H3,(H2,19,30)(H2,20,21,22)
InChI KeyIGGCBWFVVFZDLU-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces griseusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as glycosylamines. Glycosylamines are compounds consisting of an amine with a beta-N-glycosidic bond to a carbohydrate, thus forming a cyclic hemiaminal ether bond (alpha-amino ether).
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentGlycosylamines
Alternative Parents
Substituents
  • Alpha-amino acid amide
  • Hexose monosaccharide
  • N-glycosyl compound
  • Alpha-amino acid or derivatives
  • Imidazopyridine
  • Delta-lactam
  • Piperidinone
  • Monosaccharide
  • Oxane
  • Piperidine
  • 2-imidazoline
  • Carbamic acid ester
  • Tertiary carboxylic acid amide
  • Lactam
  • Amino acid or derivatives
  • Carboxamide group
  • Secondary alcohol
  • Guanidine
  • Oxacycle
  • Carboxylic acid derivative
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Carboximidamide
  • Organic oxide
  • Organic nitrogen compound
  • Alcohol
  • Amine
  • Hydrocarbon derivative
  • Carbonyl group
  • Primary amine
  • Primary alcohol
  • Primary aliphatic amine
  • Organonitrogen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-2.7ALOGPS
logP-5.3ChemAxon
logS-1.5ALOGPS
pKa (Strongest Acidic)13.13ChemAxon
pKa (Strongest Basic)9.12ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area225.3 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity103.88 m³·mol⁻¹ChemAxon
Polarizability44.42 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound53463863
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]