NP-MRD: Showing NP-Card for β-chamigrene (NP0268890)

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Record Information

Version

1.0

Created at

2022-09-08 14:09:53 UTC

Updated at

2022-09-08 14:09:53 UTC

NP-MRD ID

NP0268890

Secondary Accession Numbers

None

Natural Product Identification

Common Name

β-chamigrene

Description

Beta-Chamigrene, also known as β-chamigrene, belongs to the class of organic compounds known as chamigranes. These are sesquiterpenoids characterized by a 1,1,5,9-tetramethylspiro[5,5]undecane skeleton, formally obtained by linking the C1-C6 and C6-C11 of farnesane together. They are predominantly isolated from algae. β-chamigrene is found in Cedrela odorata, Omphalanthus filiformis, Marchantia polymorpha and Schisandra chinensis. Beta-Chamigrene is possibly neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 40  0  0  0  0  0  0  0  0999 V2000
   -0.5539    2.3681    1.0236 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8198    1.4478    0.1388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9388    1.6549   -0.8286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9564    0.5519   -0.6634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2617   -0.7631   -0.8046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1524   -0.9163    0.1998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7484   -0.6981    1.5766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6077   -2.2991    0.1268 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0759    0.1544    0.0055 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5259    0.1094   -1.3479 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9868   -0.1209   -1.4091 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8402    0.0383   -0.4190 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2881   -0.2106   -0.5530 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2812    0.4873    0.8804 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9015   -0.0633    1.0961 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1353    3.2812    1.0618 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2352    2.3013    1.7643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5926    1.6353   -1.8760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4311    2.6351   -0.6753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4435    0.5745    0.3364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7162    0.6380   -1.4408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9486   -0.9611   -1.8380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0198   -1.5564   -0.5371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1420   -1.2113    2.3492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7813   -1.1313    1.6494 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8820    0.3888    1.7944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3243   -2.7152    1.1284 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2015   -2.4463   -0.5990 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4514   -2.9682   -0.2154 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3661    1.0813   -1.9106 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0551   -0.6403   -2.0253 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4036   -0.4519   -2.3566 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8841    0.5644    0.0072 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5280   -1.1785   -0.0237 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6231   -0.3010   -1.5906 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3833    1.5684    1.0161 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9245    0.0246    1.6874 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5219    0.3087    2.0682 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0331   -1.1811    1.2037 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 12  1  0
 12 11  2  0
 11 10  1  0
 10  9  1  0
  9 15  1  0
 15 14  1  0
  9  2  1  1
  2  1  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
 14 12  1  0
  6  9  1  0
 13 33  1  0
 13 34  1  0
 13 35  1  0
 11 32  1  0
 10 30  1  0
 10 31  1  0
 15 38  1  0
 15 39  1  0
 14 36  1  0
 14 37  1  0
  1 16  1  0
  1 17  1  0
  3 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  5 22  1  0
  5 23  1  0
  7 24  1  0
  7 25  1  0
  7 26  1  0
  8 27  1  0
  8 28  1  0
  8 29  1  0
M  END


  Mrv0541 02241220582D          

 15 16  0  0  0  0            999 V2000
   -0.9355    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9232   -1.1265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2523   -0.7392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  2  7  1  0  0  0  0
  5  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  5 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0268890

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CCC2(CC1)C(=C)CCCC2(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C15H24/c1-12-7-10-15(11-8-12)13(2)6-5-9-14(15,3)4/h7H,2,5-6,8-11H2,1,3-4H3

> <INCHI_KEY>
WLNGPDPILFYWKF-UHFFFAOYSA-N

> <FORMULA>
C15H24

> <MOLECULAR_WEIGHT>
204.3511

> <EXACT_MASS>
204.187800768

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_AVERAGE_POLARIZABILITY>
25.669563749612525

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3,7,7-trimethyl-11-methylidenespiro[5.5]undec-2-ene

> <ALOGPS_LOGP>
6.03

> <JCHEM_LOGP>
4.532337415333334

> <ALOGPS_LOGS>
-5.08

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0

> <JCHEM_REFRACTIVITY>
67.3789

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.72e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
β-chamigrene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      -1.746   0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.874   3.437   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.954   0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.644  -0.564   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.590  -2.103   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.338  -1.380   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    8   13                                             
CONECT    6    5    7                                                       
CONECT    7    6    2                                                       
CONECT    8    5    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    5   14   15                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   32    0
END

View in JSmol

Synonyms

Value	Source
b-Chamigrene	Generator
Β-chamigrene	Generator
Chamigrene	MeSH
Isochamigrene	MeSH
(S)-Isochamigrene	MeSH

Chemical Formula

C₁₅H₂₄

Average Mass

204.3511 Da

Monoisotopic Mass

204.18780 Da

IUPAC Name

3,7,7-trimethyl-11-methylidenespiro[5.5]undec-2-ene

Traditional Name

β-chamigrene

CAS Registry Number

Not Available

SMILES

CC1=CCC2(CC1)C(=C)CCCC2(C)C

InChI Identifier

InChI=1S/C15H24/c1-12-7-10-15(11-8-12)13(2)6-5-9-14(15,3)4/h7H,2,5-6,8-11H2,1,3-4H3

InChI Key

WLNGPDPILFYWKF-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cedrela odorata	LOTUS Database	35616633
Cheilolejeunea filiformis	LOTUS Database	35616633
Marchantia polymorpha	LOTUS Database	35616633
Schisandra chinensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as chamigranes. These are sesquiterpenoids characterized by a 1,1,5,9-tetramethylspiro[5,5]undecane skeleton, formally obtained by linking the C1-C6 and C6-C11 of farnesane together. They are predominantly isolated from algae.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Chamigranes

Alternative Parents

Substituents

Chamigrane sesquiterpenoid
Branched unsaturated hydrocarbon
Polycyclic hydrocarbon
Cyclic olefin
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

carbobicyclic compound (CHEBI:61744 )
sesquiterpene (CHEBI:61744 )
a sesquiterpenoid (CPD-8241 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.03	ALOGPS
logP	4.53	ChemAxon
logS	-5.1	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	67.38 m³·mol⁻¹	ChemAxon
Polarizability	25.67 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB005917

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

29073

PDB ID

Not Available

ChEBI ID

61744

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for β-chamigrene (NP0268890)

MOL for NP0268890 (β-chamigrene)

3D MOL for NP0268890 (β-chamigrene)

3D SDF for NP0268890 (β-chamigrene)

3D-SDF for NP0268890 (β-chamigrene)

PDB for NP0268890 (β-chamigrene)

3D PDB for NP0268890 (β-chamigrene)

SMILES for NP0268890 (β-chamigrene)

INCHI for NP0268890 (β-chamigrene)

Structure for NP0268890 (β-chamigrene)

3D Structure for NP0268890 (β-chamigrene)