Np mrd loader

Record Information
Version1.0
Created at2022-09-06 00:44:16 UTC
Updated at2022-09-06 00:44:17 UTC
NP-MRD IDNP0222808
Secondary Accession NumbersNone
Natural Product Identification
Common Nameedetic acid
DescriptionEdetic Acid, also known as EDTA or edetate, belongs to the class of organic compounds known as tetracarboxylic acids and derivatives. These are carboxylic acids containing exactly four carboxyl groups. Edetic Acid is a drug which is used for the reduction of blood levels and depot stores of lead in lead poisoning (acute and chronic) and lead encephalopathy, in both pediatric populations and adults. Edetic Acid is a very strong basic compound (based on its pKa). Edetic Acid is a potentially toxic compound. edetic acid is found in Apis cerana. It was first documented in 2013 (PMID: 23438684). In addition to having a lower toxicity after chelation, IDS is degraded by Agrobacterium tumefaciens (BY6), which can be harvested on a large scale.
Structure
Thumb
Synonyms
ValueSource
(Ethylenedinitrilo)tetraacetic acid, ion(4-)ChEBI
2,2',2'',2'''-(ethane-1,2-diyldinitrilo)tetraacetateChEBI
Acide edetiqueChEBI
Acide ethylenediaminetetracetiqueChEBI
Acido edeticoChEBI
Acidum edeticumChEBI
EDTAChEBI
EDTA, ion(4-)ChEBI
EthylenediaminetetraacetateChEBI
H4EDtaChEBI
N,N'-1,2-ethane diylbis-(N-(carboxymethyl)glycine)ChEBI
{[-(bis-carboxymethyl-amino)-ethyl]-carboxymethyl-amino}-acetIC ACIDChEBI
Ethylenediaminetetraacetic acidKegg
Versene acidKegg
(Ethylenedinitrilo)tetraacetate, ion(4-)Generator
2,2',2'',2'''-(ethane-1,2-diyldinitrilo)tetraacetic acidGenerator
{[-(bis-carboxymethyl-amino)-ethyl]-carboxymethyl-amino}-acetateGenerator
EdetateGenerator
CaEDTAHMDB
Calcium disodium edetateHMDB
Calcium disodium versenateHMDB
Edetate calciumHMDB
Edetate calcium disodiumHMDB
EDTHMDB
Acid, ethylenedinitrilotetraaceticHMDB
Calcium tetacineHMDB
Copper edtaHMDB
EDTA, disodiumHMDB
EDTA, distannousHMDB
EdathamilHMDB
EdetatesHMDB
Edetic acid, dipotassium saltHMDB
Edetic acid, disodium salt, dihydrateHMDB
Edetic acid, disodium, magnesium saltHMDB
Edetic acid, magnesium saltHMDB
Ethylenedinitrilotetraacetic acidHMDB
N,N'-1,2-ethanediylbis(N-(carboxymethyl)glycine)HMDB
Potassium edtaHMDB
Chromium edtaHMDB
CoprinHMDB
Dinitrilotetraacetate, ethyleneHMDB
Disodium ethylene dinitrilotetraacetateHMDB
Distannous edtaHMDB
EDTA, chromiumHMDB
EDTA, dicobaltHMDB
EDTA, galliumHMDB
EDTA, magnesium disodiumHMDB
Edetate disodium calciumHMDB
Edetic acid, disodium saltHMDB
Edetic acid, monosodium saltHMDB
Edetic acid, potassium saltHMDB
Gallium edtaHMDB
Tetacine, calciumHMDB
VerseneHMDB
Acid, ethylenediaminetetraaceticHMDB
Calcitetracemate, disodiumHMDB
Chelaton 3HMDB
Dinitrilotetraacetate, disodium ethyleneHMDB
Disodium edtaHMDB
EDTA, copperHMDB
Edetic acid, sodium saltHMDB
Ethylene dinitrilotetraacetate, disodiumHMDB
Stannous edtaHMDB
TetracemateHMDB
VersenateHMDB
Versenate, calcium disodiumHMDB
Acid, edeticHMDB
Dicobalt edtaHMDB
Disodium calcitetracemateHMDB
Disodium versenate, calciumHMDB
EDTA, potassiumHMDB
EDTA, stannousHMDB
Edetate, calcium disodiumHMDB
Edetic acid, calcium saltHMDB
Edetic acid, calcium, sodium saltHMDB
Edetic acid, chromium saltHMDB
Edetic acid, disodium, monopotassium saltHMDB
Edetic acid, monopotassium saltHMDB
Ethylene dinitrilotetraacetateHMDB
Magnesium disodium edtaHMDB
Edetic acidChEBI
Chemical FormulaC10H16N2O8
Average Mass292.2426 Da
Monoisotopic Mass292.09067 Da
IUPAC Name2-({2-[bis(carboxymethyl)amino]ethyl}(carboxymethyl)amino)acetic acid
Traditional Nameedta
CAS Registry NumberNot Available
SMILES
OC(=O)CN(CCN(CC(O)=O)CC(O)=O)CC(O)=O
InChI Identifier
InChI=1S/C10H16N2O8/c13-7(14)3-11(4-8(15)16)1-2-12(5-9(17)18)6-10(19)20/h1-6H2,(H,13,14)(H,15,16)(H,17,18)(H,19,20)
InChI KeyKCXVZYZYPLLWCC-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Apis ceranaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as tetracarboxylic acids and derivatives. These are carboxylic acids containing exactly four carboxyl groups.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassTetracarboxylic acids and derivatives
Direct ParentTetracarboxylic acids and derivatives
Alternative Parents
Substituents
  • Tetracarboxylic acid or derivatives
  • Alpha-amino acid
  • Alpha-amino acid or derivatives
  • Amino acid or derivatives
  • Tertiary amine
  • Tertiary aliphatic amine
  • Amino acid
  • Carboxylic acid
  • Organopnictogen compound
  • Organic nitrogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Amine
  • Organic oxide
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.2ALOGPS
logP-4.9ChemAxon
logS-1.5ALOGPS
pKa (Strongest Acidic)2.35ChemAxon
pKa (Strongest Basic)7.73ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area155.68 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity62.35 m³·mol⁻¹ChemAxon
Polarizability25.64 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0015109
DrugBank IDDB00974
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID5826
KEGG Compound IDC00284
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkEdetate
METLIN IDNot Available
PubChem Compound6049
PDB IDEDT
ChEBI ID42191
Good Scents IDNot Available
References
General References
  1. Melzer N, Wittenburg D, Hartwig S, Jakubowski S, Kesting U, Willmitzer L, Lisec J, Reinsch N, Repsilber D: Investigating associations between milk metabolite profiles and milk traits of Holstein cows. J Dairy Sci. 2013 Mar;96(3):1521-34. doi: 10.3168/jds.2012-5743. [PubMed:23438684 ]
  2. LOTUS database [Link]