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Showing NP-Card for 2-(hex-5-en-1-yl)oxirane (NP0168042)

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Record Information
Version1.0
Created at2022-09-03 03:44:55 UTC
Updated at2022-09-03 03:44:55 UTC
NP-MRD IDNP0168042
Secondary Accession NumbersNone
Natural Product Identification
Common Name2-(hex-5-en-1-yl)oxirane
Description1,2-Epoxy-7-octene belongs to the class of organic compounds known as epoxides. Epoxides are compounds containing a cyclic ether with three ring atoms(one oxygen and two carbon atoms). 2-(hex-5-en-1-yl)oxirane is found in Artemisia capillaris. 1,2-Epoxy-7-octene is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
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MOL3D MOLSDFPDBSMILESInChI

MOL for NP0168042 (2-(hex-5-en-1-yl)oxirane)


  Mrv1533004261506012D          

  9  9  0  0  0  0            999 V2000
    3.3000    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7289    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4434    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8724    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5868    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4118    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  7  9  1  0  0  0  0
M  END
Download

3D MOL for NP0168042 (2-(hex-5-en-1-yl)oxirane)

     RDKit          3D

 23 23  0  0  0  0  0  0  0  0999 V2000
   -3.6693    0.4088    0.4944 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9881   -0.5974   -0.0318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5168   -0.7381    0.2606 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7668   -0.6742   -1.0358 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7269   -0.8112   -0.9022 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2440    0.2904   -0.0522 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7438    0.2520    0.1396 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2549    1.3854    1.0113 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2886    0.0422    1.3779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2124    1.1546    1.1403 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7199    0.5083    0.2849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4678   -1.3068   -0.6581 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2216    0.0577    0.9717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3811   -1.7511    0.7250 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1506   -1.4636   -1.7299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9920    0.3244   -1.5128 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9445   -1.8290   -0.4963 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1342   -0.7065   -1.9426 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7709    0.2712    0.9599 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9802    1.2564   -0.5225 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3130    0.0469   -0.7871 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1571    1.9068    0.6933 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5284    1.9729    1.6123 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9  7  1  0
  1 10  1  0
  1 11  1  0
  2 12  1  0
  3 13  1  0
  3 14  1  0
  4 15  1  0
  4 16  1  0
  5 17  1  0
  5 18  1  0
  6 19  1  0
  6 20  1  0
  7 21  1  6
  8 22  1  0
  8 23  1  0
M  END
Download

3D SDF for NP0168042 (2-(hex-5-en-1-yl)oxirane)


  Mrv1533004261506012D          

  9  9  0  0  0  0            999 V2000
    3.3000    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7289    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4434    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8724    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5868    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4118    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  7  9  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0168042

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C=CCCCCC1CO1

> <INCHI_IDENTIFIER>
InChI=1S/C8H14O/c1-2-3-4-5-6-8-7-9-8/h2,8H,1,3-7H2

> <INCHI_KEY>
UKTHULMXFLCNAV-UHFFFAOYSA-N

> <FORMULA>
C8H14O

> <MOLECULAR_WEIGHT>
126.199

> <EXACT_MASS>
126.104465071

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
23

> <JCHEM_AVERAGE_POLARIZABILITY>
15.479687145383224

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-(hex-5-en-1-yl)oxirane

> <ALOGPS_LOGP>
2.62

> <JCHEM_LOGP>
2.3664085849999994

> <ALOGPS_LOGS>
-3.17

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.178672884161945

> <JCHEM_POLAR_SURFACE_AREA>
12.53

> <JCHEM_REFRACTIVITY>
38.434400000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.55e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(hex-5-en-1-yl)oxirane

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for NP0168042 (2-(hex-5-en-1-yl)oxirane)

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PDB for NP0168042 (2-(hex-5-en-1-yl)oxirane)
HEADER    PROTEIN                                 26-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-APR-15         0                                  
HETATM    1  C   UNK     0       6.160   2.667   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.494   3.437   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.827   2.667   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.161   3.437   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      11.495   2.667   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      12.828   3.437   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      14.162   2.667   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      15.702   2.667   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      14.932   1.334   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7    9                                                       
CONECT    9    8    7                                                       
MASTER        0    0    0    0    0    0    0    0    9    0   18    0
END

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3D PDB for NP0168042 (2-(hex-5-en-1-yl)oxirane)
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SMILES for NP0168042 (2-(hex-5-en-1-yl)oxirane)
C=CCCCCC1CO1
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INCHI for NP0168042 (2-(hex-5-en-1-yl)oxirane)
InChI=1S/C8H14O/c1-2-3-4-5-6-8-7-9-8/h2,8H,1,3-7H2
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View in JSmol
SynonymsNot Available
Chemical FormulaC8H14O
Average Mass126.1990 Da
Monoisotopic Mass126.10447 Da
IUPAC Name2-(hex-5-en-1-yl)oxirane
Traditional Name2-(hex-5-en-1-yl)oxirane
CAS Registry NumberNot Available
SMILES
C=CCCCCC1CO1
InChI Identifier
InChI=1S/C8H14O/c1-2-3-4-5-6-8-7-9-8/h2,8H,1,3-7H2
InChI KeyUKTHULMXFLCNAV-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Artemisia capillarisLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as epoxides. Epoxides are compounds containing a cyclic ether with three ring atoms(one oxygen and two carbon atoms).
KingdomOrganic compounds  
Super ClassOrganoheterocyclic compounds  
ClassEpoxides  
Sub ClassNot Available
Direct ParentEpoxides  
Alternative Parents
Substituents
  • Oxacycle
    • 

  • Ether
    • 

  • Oxirane
    • 

  • Dialkyl ether
    • 

  • Organic oxygen compound
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.62ALOGPS
logP2.37ChemAxon
logS-3.2ALOGPS
pKa (Strongest Basic)-4.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area12.53 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity38.43 m³·mol⁻¹ChemAxon
Polarizability15.48 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound29678  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]