NP-MRD: Showing NP-Card for Aspartyl-Valine (NP0122860)

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Record Information

Version

1.0

Created at

2022-05-12 09:13:09 UTC

Updated at

2022-05-12 09:13:09 UTC

NP-MRD ID

NP0122860

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Aspartyl-Valine

Description

Aspartyl-Valine, also known as D-V dipeptide or asp-val, belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. Aspartyl-Valine is a very strong basic compound (based on its pKa). It is an incomplete breakdown product of protein digestion or protein catabolism. Some dipeptides are known to have physiological or cell-signaling effects although most are simply short-lived intermediates on their way to specific amino acid degradation pathways following further proteolysis. Aspartyl-Valine is a dipeptide composed of aspartate and valine. It was first documented in 2010 (PMID: 20442662). This dipeptide has not yet been identified in human tissues or biofluids and so it is classified as an 'Expected' metabolite (PMID: 29565828).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 31  0  0  0  0  0  0  0  0999 V2000
   -2.0613    1.7273    1.0996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8859    1.1495   -0.2662 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1435    1.2651   -1.0666 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4148   -0.2825   -0.2621 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1351   -0.4200    0.4005 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9127   -0.8109   -0.2382 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8467   -1.1150   -1.5933 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2060   -0.9387    0.4788 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6698   -2.3243    0.3979 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.2800   -0.0983   -0.1785 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9471    1.3309   -0.2042 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1221    1.7624   -1.0343 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5231    2.2249    0.6702 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4165   -1.1981    0.3560 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6014   -1.2547   -0.0585 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0923   -2.0366    1.4225 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1273    1.7495    1.3894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7365    2.8092    1.1044 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4223    1.2353    1.8623 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0749    1.7344   -0.7812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2684    2.2653   -1.5385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0319    1.0097   -0.4360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1630    0.5335   -1.9144 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2785   -0.5926   -1.3177 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4395   -1.9971   -1.9028 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1177   -0.5916    1.5182 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7789   -2.5317   -0.6234 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9939   -2.9837    0.8142 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4727   -0.4291   -1.2296 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2481   -0.2158    0.3487 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0989    2.0077    1.4458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8039   -2.9839    1.3367 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 13  1  0
 11 12  2  0
  4 14  1  0
 14 16  1  0
 14 15  2  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  6
  3 21  1  0
  3 22  1  0
  3 23  1  0
  4 24  1  6
  7 25  1  0
  8 26  1  1
  9 27  1  0
  9 28  1  0
 10 29  1  0
 10 30  1  0
 13 31  1  0
 16 32  1  0
M  END


  Mrv1652304032018432D          

 16 15  0  0  0  0            999 V2000
   -1.6500   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625    0.7145    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625    2.1434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250   -1.4289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -2.1434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  4  1  1  0  0  0  0
  4  2  1  0  0  0  0
  5  3  1  0  0  0  0
  6  3  1  0  0  0  0
  7  4  1  0  0  0  0
  8  5  1  0  0  0  0
  9  7  1  0  0  0  0
 10  5  1  0  0  0  0
 11  7  1  4  0  0  0
 11  8  2  0  0  0  0
 12  6  2  0  0  0  0
 13  6  1  0  0  0  0
 14  8  1  0  0  0  0
 15  9  2  0  0  0  0
 16  9  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0122860

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C(N=C(O)C(N)CC(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C9H16N2O5/c1-4(2)7(9(15)16)11-8(14)5(10)3-6(12)13/h4-5,7H,3,10H2,1-2H3,(H,11,14)(H,12,13)(H,15,16)

> <INCHI_KEY>
CPMKYMGGYUFOHS-UHFFFAOYSA-N

> <FORMULA>
C9H16N2O5

> <MOLECULAR_WEIGHT>
232.2337

> <EXACT_MASS>
232.105921632

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
22.637935537490712

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(2-amino-3-carboxy-1-hydroxypropylidene)amino]-3-methylbutanoic acid

> <ALOGPS_LOGP>
-2.96

> <JCHEM_LOGP>
-2.588983751091211

> <ALOGPS_LOGS>
-1.67

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
3.8508751944853525

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.03585470487434

> <JCHEM_PKA_STRONGEST_BASIC>
9.702293334840823

> <JCHEM_POLAR_SURFACE_AREA>
133.20999999999998

> <JCHEM_REFRACTIVITY>
53.34740000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.98e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(2-amino-3-carboxy-1-hydroxypropylidene)amino]-3-methylbutanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-APR-20         0                                  
HETATM    1  C   UNK     0      -3.080  -2.667   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.080   0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.540   2.667   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.310  -1.334   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.310   4.001   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.770  -1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000  -2.667   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0       3.850   1.334   0.000  0.00  0.00           N+0
HETATM   11  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   12  O   UNK     0       1.540   5.335   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       3.850   4.001   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       2.310  -1.334   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       1.540  -2.667   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      -0.770  -4.001   0.000  0.00  0.00           O+0
CONECT    1    4                                                            
CONECT    2    4                                                            
CONECT    3    5    6                                                       
CONECT    4    1    2    7                                                  
CONECT    5    3    8   10                                                  
CONECT    6    3   12   13                                                  
CONECT    7    4    9   11                                                  
CONECT    8    5   11   14                                                  
CONECT    9    7   15   16                                                  
CONECT   10    5                                                            
CONECT   11    7    8                                                       
CONECT   12    6                                                            
CONECT   13    6                                                            
CONECT   14    8                                                            
CONECT   15    9                                                            
CONECT   16    9                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   30    0
END

View in JSmol

Synonyms

Value	Source
Asp-val	HMDB
Aspartate valine dipeptide	HMDB
Aspartate-valine dipeptide	HMDB
Aspartylvaline	HMDB
D-V Dipeptide	HMDB
DV Dipeptide	HMDB
L-Aspartyl-L-valine	HMDB
2-[(2-Amino-3-carboxy-1-hydroxypropylidene)amino]-3-methylbutanoate	Generator

Chemical Formula

C₉H₁₆N₂O₅

Average Mass

232.2337 Da

Monoisotopic Mass

232.10592 Da

IUPAC Name

2-[(2-amino-3-carboxy-1-hydroxypropylidene)amino]-3-methylbutanoic acid

Traditional Name

2-[(2-amino-3-carboxy-1-hydroxypropylidene)amino]-3-methylbutanoic acid

CAS Registry Number

Not Available

SMILES

CC(C)C(N=C(O)C(N)CC(O)=O)C(O)=O

InChI Identifier

InChI=1S/C9H16N2O5/c1-4(2)7(9(15)16)11-8(14)5(10)3-6(12)13/h4-5,7H,3,10H2,1-2H3,(H,11,14)(H,12,13)(H,15,16)

InChI Key

CPMKYMGGYUFOHS-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Dipeptides

Alternative Parents

Substituents

Alpha-dipeptide
Aspartic acid or derivatives
N-acyl-alpha-amino acid
Valine or derivatives
N-acyl-alpha amino acid or derivatives
Alpha-amino acid amide
Alpha-amino acid or derivatives
Branched fatty acid
Methyl-branched fatty acid
N-acyl-amine
Fatty amide
Dicarboxylic acid or derivatives
Fatty acid
Fatty acyl
Secondary carboxylic acid amide
Carboxamide group
Amino acid or derivatives
Amino acid
Carboxylic acid
Organic nitrogen compound
Primary aliphatic amine
Organonitrogen compound
Organooxygen compound
Primary amine
Hydrocarbon derivative
Carbonyl group
Organic oxide
Organopnictogen compound
Amine
Organic oxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-3	ALOGPS
logP	-2.6	ChemAxon
logS	-1.7	ALOGPS
pKa (Strongest Acidic)	3.04	ChemAxon
pKa (Strongest Basic)	9.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	133.21 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	53.35 m³·mol⁻¹	ChemAxon
Polarizability	22.64 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0028766

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

4991131

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Pan L, Yu J, Mi Z, Mo L, Jin H, Yao C, Ren D, Menghe B: A Metabolomics Approach Uncovers Differences between Traditional and Commercial Dairy Products in Buryatia (Russian Federation). Molecules. 2018 Mar 22;23(4). pii: molecules23040735. doi: 10.3390/molecules23040735. [PubMed:29565828 ]
Folefoc AT, Fromme BJ, Katz AA, Flanagan CA: South African mutations of the CCR5 coreceptor for HIV modify interaction with chemokines and HIV Envelope protein. J Acquir Immune Defic Syndr. 2010 Aug;54(4):352-9. doi: 10.1097/QAI.0b013e3181e0c7b2. [PubMed:20442662 ]

Showing NP-Card for Aspartyl-Valine (NP0122860)

MOL for NP0122860 (Aspartyl-Valine)

3D MOL for NP0122860 (Aspartyl-Valine)

3D SDF for NP0122860 (Aspartyl-Valine)

3D-SDF for NP0122860 (Aspartyl-Valine)

PDB for NP0122860 (Aspartyl-Valine)

3D PDB for NP0122860 (Aspartyl-Valine)

SMILES for NP0122860 (Aspartyl-Valine)

INCHI for NP0122860 (Aspartyl-Valine)

Structure for NP0122860 (Aspartyl-Valine)

3D Structure for NP0122860 (Aspartyl-Valine)