NP-MRD: Showing NP-Card for (-)-Dalmaisiose F (NP0080226)

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Record Information

Version

1.0

Created at

2022-04-29 01:16:49 UTC

Updated at

2022-04-29 01:16:49 UTC

NP-MRD ID

NP0080226

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Dalmaisiose F

Description

(2S,3S,4R,5R)-2-{[(2R,3R,4S,5R,6R)-6-[(acetyloxy)methyl]-4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3-{[(2S,3R,4S,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2Z)-3-(4-{[(2S,3S,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)prop-2-enoyl]oxy}oxan-2-yl]oxy}-4-hydroxy-2-({[(2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]oxy}methyl)-5-(hydroxymethyl)oxolan-3-yl benzoate belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds. (-)-Dalmaisiose F is found in Polygala dalmaisiana. Based on a literature review very few articles have been published on (2S,3S,4R,5R)-2-{[(2R,3R,4S,5R,6R)-6-[(acetyloxy)methyl]-4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3-{[(2S,3R,4S,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2Z)-3-(4-{[(2S,3S,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)prop-2-enoyl]oxy}oxan-2-yl]oxy}-4-hydroxy-2-({[(2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]oxy}methyl)-5-(hydroxymethyl)oxolan-3-yl benzoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292203162D          

 90 97  0  0  1  0            999 V2000
   -0.4125   -3.7445    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -1.3945   -2.1633    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -2.8564    1.1222    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -2.6063   -6.0461    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.4629   -3.5541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  4  6  1  1  0  0  0
  7  6  1  1  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  1  0  0  0
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 16 17  1  0  0  0  0
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 19 20  1  6  0  0  0
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M  END

     RDKit          3D

162169  0  0  0  0  0  0  0  0999 V2000
    2.5599   -2.8101    4.0721 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0610   -2.5018    5.3649 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652304292203162D          

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M  END
> <DATABASE_ID>
NP0080226

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(O)C=CC(\C=C\C(=O)OC[C@@]2(O[C@H]3O[C@H](COC(C)=O)[C@@H](OC(=O)\C=C/C4=CC=C(O[C@@H]5O[C@@H](C)[C@H](O)[C@@H](O)[C@@H]5O)C=C4)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)[C@H]3O[C@@H]3O[C@@H](CO)[C@@H](O)[C@H](O)[C@H]3O)O[C@H](CO)[C@@H](O)[C@@H]2OC(=O)C2=CC=CC=C2)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C58H72O32/c1-25-39(66)43(70)46(73)54(80-25)81-30-14-9-27(10-15-30)12-18-38(65)85-49-36(23-78-26(2)62)84-57(51(87-56-48(75)45(72)41(68)34(21-60)83-56)50(49)86-55-47(74)44(71)40(67)33(20-59)82-55)90-58(24-79-37(64)17-13-28-11-16-31(63)32(19-28)77-3)52(42(69)35(22-61)89-58)88-53(76)29-7-5-4-6-8-29/h4-19,25,33-36,39-52,54-57,59-61,63,66-75H,20-24H2,1-3H3/b17-13+,18-12-/t25-,33+,34-,35+,36+,39-,40+,41+,42+,43+,44-,45-,46-,47+,48+,49+,50-,51+,52-,54-,55-,56-,57+,58-/m0/s1

> <INCHI_KEY>
GLDXDBQXOCJVQC-KNJJVCEBSA-N

> <FORMULA>
C58H72O32

> <MOLECULAR_WEIGHT>
1281.182

> <EXACT_MASS>
1280.400670158

> <JCHEM_ACCEPTOR_COUNT>
28

> <JCHEM_ATOM_COUNT>
162

> <JCHEM_AVERAGE_POLARIZABILITY>
122.27923217122682

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
14

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3S,4R,5R)-2-{[(2R,3R,4S,5R,6R)-6-[(acetyloxy)methyl]-4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3-{[(2S,3R,4S,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2Z)-3-(4-{[(2S,3S,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)prop-2-enoyl]oxy}oxan-2-yl]oxy}-4-hydroxy-2-({[(2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]oxy}methyl)-5-(hydroxymethyl)oxolan-3-yl benzoate

> <ALOGPS_LOGP>
0.55

> <JCHEM_LOGP>
-1.0522595956666665

> <ALOGPS_LOGS>
-2.90

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
8

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.77129294501802

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.862339895190757

> <JCHEM_PKA_STRONGEST_BASIC>
-3.676830436704803

> <JCHEM_POLAR_SURFACE_AREA>
480.72000000000014

> <JCHEM_REFRACTIVITY>
292.7353

> <JCHEM_ROTATABLE_BOND_COUNT>
27

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.62e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3S,4R,5R)-2-{[(2R,3R,4S,5R,6R)-6-[(acetyloxy)methyl]-4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3-{[(2S,3R,4S,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2Z)-3-(4-{[(2S,3S,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)prop-2-enoyl]oxy}oxan-2-yl]oxy}-4-hydroxy-2-({[(2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]oxy}methyl)-5-(hydroxymethyl)oxolan-3-yl benzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0      -0.770  -6.990   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.770  -6.990   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.246  -5.525   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -1.246  -5.525   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      -1.134  -3.578   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -2.603  -4.038   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -2.939  -5.541   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -4.409  -6.002   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -5.542  -4.959   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.206  -3.456   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.737  -2.996   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -3.401  -1.493   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -4.534  -0.450   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -4.198   1.052   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -5.332   2.095   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -6.802   1.634   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -7.137   0.131   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -6.004  -0.911   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -7.159  -1.929   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      -8.607  -0.329   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      -7.935   2.677   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -4.996   3.598   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -6.130   4.640   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      -6.340  -2.414   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -7.809  -2.874   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -8.145  -4.377   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -9.615  -4.838   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -10.748  -3.795   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0     -10.412  -2.293   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -8.943  -1.832   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -9.555  -0.419   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0     -11.546  -1.250   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0     -12.218  -4.256   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -9.951  -6.341   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0     -11.420  -6.801   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0      -7.012  -5.420   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0      -7.348  -6.923   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      -6.214  -7.965   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      -8.817  -7.383   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      -9.153  -8.886   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      -8.020  -9.928   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      -6.550  -9.468   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      -5.416 -10.510   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      -5.752 -12.013   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      -7.222 -12.474   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      -8.355 -11.431   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0      -4.619 -13.056   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0      -4.955 -14.559   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      -3.821 -15.601   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0      -4.157 -17.104   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      -5.627 -17.564   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      -6.760 -16.522   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      -6.424 -15.019   0.000  0.00  0.00           C+0
HETATM   55  O   UNK     0      -7.558 -13.977   0.000  0.00  0.00           O+0
HETATM   56  O   UNK     0      -8.230 -16.982   0.000  0.00  0.00           O+0
HETATM   57  O   UNK     0      -5.963 -19.067   0.000  0.00  0.00           O+0
HETATM   58  C   UNK     0      -3.023 -18.146   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      -4.745  -7.504   0.000  0.00  0.00           C+0
HETATM   60  O   UNK     0      -3.611  -8.547   0.000  0.00  0.00           O+0
HETATM   61  C   UNK     0      -3.947 -10.050   0.000  0.00  0.00           C+0
HETATM   62  O   UNK     0      -2.813 -11.092   0.000  0.00  0.00           O+0
HETATM   63  C   UNK     0      -4.865 -11.286   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0       0.756  -3.278   0.000  0.00  0.00           C+0
HETATM   65  O   UNK     0      -0.028  -1.953   0.000  0.00  0.00           O+0
HETATM   66  C   UNK     0       0.728  -0.611   0.000  0.00  0.00           C+0
HETATM   67  O   UNK     0       2.268  -0.595   0.000  0.00  0.00           O+0
HETATM   68  C   UNK     0      -0.056   0.714   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0       0.700   2.056   0.000  0.00  0.00           C+0
HETATM   70  C   UNK     0      -0.084   3.382   0.000  0.00  0.00           C+0
HETATM   71  C   UNK     0       0.672   4.723   0.000  0.00  0.00           C+0
HETATM   72  C   UNK     0      -0.112   6.049   0.000  0.00  0.00           C+0
HETATM   73  C   UNK     0      -1.652   6.033   0.000  0.00  0.00           C+0
HETATM   74  C   UNK     0      -2.408   4.691   0.000  0.00  0.00           C+0
HETATM   75  C   UNK     0      -1.624   3.366   0.000  0.00  0.00           C+0
HETATM   76  O   UNK     0      -2.436   7.358   0.000  0.00  0.00           O+0
HETATM   77  O   UNK     0       0.644   7.391   0.000  0.00  0.00           O+0
HETATM   78  C   UNK     0       2.184   7.407   0.000  0.00  0.00           C+0
HETATM   79  O   UNK     0       2.711  -5.049   0.000  0.00  0.00           O+0
HETATM   80  C   UNK     0       3.855  -6.080   0.000  0.00  0.00           C+0
HETATM   81  O   UNK     0       3.535  -7.586   0.000  0.00  0.00           O+0
HETATM   82  C   UNK     0       5.320  -5.604   0.000  0.00  0.00           C+0
HETATM   83  C   UNK     0       5.640  -4.098   0.000  0.00  0.00           C+0
HETATM   84  C   UNK     0       7.104  -3.622   0.000  0.00  0.00           C+0
HETATM   85  C   UNK     0       8.249  -4.652   0.000  0.00  0.00           C+0
HETATM   86  C   UNK     0       7.929  -6.158   0.000  0.00  0.00           C+0
HETATM   87  C   UNK     0       6.464  -6.634   0.000  0.00  0.00           C+0
HETATM   88  O   UNK     0       1.675  -8.236   0.000  0.00  0.00           O+0
HETATM   89  C   UNK     0      -1.675  -8.236   0.000  0.00  0.00           C+0
HETATM   90  O   UNK     0      -1.049  -9.643   0.000  0.00  0.00           O+0
CONECT    1    2    5   89                                                  
CONECT    2    1    3   88                                                  
CONECT    3    2    4   79                                                  
CONECT    4    3    5    6   64                                             
CONECT    5    4    1                                                       
CONECT    6    4    7                                                       
CONECT    7    6    8   12                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   59                                                  
CONECT   10    9   11   37                                                  
CONECT   11   10   12   25                                                  
CONECT   12   11    7   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   19                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   23                                                  
CONECT   17   16   18   22                                                  
CONECT   18   17   19   21                                                  
CONECT   19   18   14   20                                                  
CONECT   20   19                                                            
CONECT   21   18                                                            
CONECT   22   17                                                            
CONECT   23   16   24                                                       
CONECT   24   23                                                            
CONECT   25   11   26                                                       
CONECT   26   25   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   35                                                  
CONECT   29   28   30   34                                                  
CONECT   30   29   31   33                                                  
CONECT   31   30   26   32                                                  
CONECT   32   31                                                            
CONECT   33   30                                                            
CONECT   34   29                                                            
CONECT   35   28   36                                                       
CONECT   36   35                                                            
CONECT   37   10   38                                                       
CONECT   38   37   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43   47                                                  
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46   48                                                  
CONECT   46   45   47                                                       
CONECT   47   46   42                                                       
CONECT   48   45   49                                                       
CONECT   49   48   50   54                                                  
CONECT   50   49   51                                                       
CONECT   51   50   52   58                                                  
CONECT   52   51   53   57                                                  
CONECT   53   52   54   56                                                  
CONECT   54   53   49   55                                                  
CONECT   55   54                                                            
CONECT   56   53                                                            
CONECT   57   52                                                            
CONECT   58   51                                                            
CONECT   59    9   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62   63                                                  
CONECT   62   61                                                            
CONECT   63   61                                                            
CONECT   64    4   65                                                       
CONECT   65   64   66                                                       
CONECT   66   65   67   68                                                  
CONECT   67   66                                                            
CONECT   68   66   69                                                       
CONECT   69   68   70                                                       
CONECT   70   69   71   75                                                  
CONECT   71   70   72                                                       
CONECT   72   71   73   77                                                  
CONECT   73   72   74   76                                                  
CONECT   74   73   75                                                       
CONECT   75   74   70                                                       
CONECT   76   73                                                            
CONECT   77   72   78                                                       
CONECT   78   77                                                            
CONECT   79    3   80                                                       
CONECT   80   79   81   82                                                  
CONECT   81   80                                                            
CONECT   82   80   83   87                                                  
CONECT   83   82   84                                                       
CONECT   84   83   85                                                       
CONECT   85   84   86                                                       
CONECT   86   85   87                                                       
CONECT   87   86   82                                                       
CONECT   88    2                                                            
CONECT   89    1   90                                                       
CONECT   90   89                                                            
MASTER        0    0    0    0    0    0    0    0   90    0  194    0
END

View in JSmol

Synonyms

Value

Source

Generator

Chemical Formula

C₅₈H₇₂O₃₂

Average Mass

1281.1820 Da

Monoisotopic Mass

1280.40067 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

COC1=C(O)C=CC(\C=C\C(=O)OC[C@@]2(O[C@H]3O[C@H](COC(C)=O)[C@@H](OC(=O)\C=C/C4=CC=C(O[C@@H]5O[C@@H](C)[C@H](O)[C@@H](O)[C@@H]5O)C=C4)[C@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)[C@H]3O[C@@H]3O[C@@H](CO)[C@@H](O)[C@H](O)[C@H]3O)O[C@H](CO)[C@@H](O)[C@@H]2OC(=O)C2=CC=CC=C2)=C1

InChI Identifier

InChI=1S/C58H72O32/c1-25-39(66)43(70)46(73)54(80-25)81-30-14-9-27(10-15-30)12-18-38(65)85-49-36(23-78-26(2)62)84-57(51(87-56-48(75)45(72)41(68)34(21-60)83-56)50(49)86-55-47(74)44(71)40(67)33(20-59)82-55)90-58(24-79-37(64)17-13-28-11-16-31(63)32(19-28)77-3)52(42(69)35(22-61)89-58)88-53(76)29-7-5-4-6-8-29/h4-19,25,33-36,39-52,54-57,59-61,63,66-75H,20-24H2,1-3H3/b17-13+,18-12-/t25-,33+,34-,35+,36+,39-,40+,41+,42+,43+,44-,45-,46-,47+,48+,49+,50-,51+,52-,54-,55-,56-,57+,58-/m0/s1

InChI Key

GLDXDBQXOCJVQC-KNJJVCEBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Polygala dalmaisiana	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Oligosaccharides

Alternative Parents

Substituents

Oligosaccharide
Phenolic glycoside
Tetracarboxylic acid or derivatives
Cinnamic acid ester
Hydroxycinnamic acid or derivatives
Coumaric acid or derivatives
Cinnamic acid or derivatives
O-glycosyl compound
Glycosyl compound
C-glycosyl compound
Methoxyphenol
Benzoate ester
Benzoic acid or derivatives
Phenoxy compound
Methoxybenzene
Styrene
Phenol ether
Benzoyl
Anisole
1-hydroxy-2-unsubstituted benzenoid
Ketal
Phenol
Fatty acid ester
Alkyl aryl ether
Fatty acyl
Benzenoid
Oxane
Monocyclic benzene moiety
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Ether
Carboxylic acid derivative
Acetal
Organic oxide
Hydrocarbon derivative
Primary alcohol
Carbonyl group
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.55	ALOGPS
logP	-1.1	ChemAxon
logS	-2.9	ALOGPS
pKa (Strongest Acidic)	9.86	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	28	ChemAxon
Hydrogen Donor Count	14	ChemAxon
Polar Surface Area	480.72 Å²	ChemAxon
Rotatable Bond Count	27	ChemAxon
Refractivity	292.74 m³·mol⁻¹	ChemAxon
Polarizability	122.28 Å³	ChemAxon
Number of Rings	8	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162931481

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (-)-Dalmaisiose F (NP0080226)

MOL for NP0080226 ((-)-Dalmaisiose F)

3D MOL for NP0080226 ((-)-Dalmaisiose F)

3D SDF for NP0080226 ((-)-Dalmaisiose F)

3D-SDF for NP0080226 ((-)-Dalmaisiose F)

PDB for NP0080226 ((-)-Dalmaisiose F)

3D PDB for NP0080226 ((-)-Dalmaisiose F)

SMILES for NP0080226 ((-)-Dalmaisiose F)

INCHI for NP0080226 ((-)-Dalmaisiose F)

Structure for NP0080226 ((-)-Dalmaisiose F)

3D Structure for NP0080226 ((-)-Dalmaisiose F)