NP-MRD: Showing NP-Card for (-)-Polianthoside D (NP0079255)

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Record Information

Version

1.0

Created at

2022-04-29 00:17:31 UTC

Updated at

2022-04-29 00:17:31 UTC

NP-MRD ID

NP0079255

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Polianthoside D

Description

Polianthoside D belongs to the class of organic compounds known as steroidal saponins. These are saponins in which the aglycone moiety is a steroid. The steroidal aglycone is usually a spirostane, furostane, spirosolane, solanidane, or curcubitacin derivative. (-)-Polianthoside D is found in Polianthes tuberosa . It was first documented in 2021 (PMID: 33939847). Based on a literature review very few articles have been published on polianthoside D.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292202172D          

 85 94  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652304292202172D          

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M  END
> <DATABASE_ID>
NP0079255

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](CC[C@@]1(O)O[C@H]2C[C@H]3[C@@H]4CC[C@H]5C[C@H](CC[C@]5(C)[C@H]4CC(=O)[C@]3(C)[C@H]2[C@@H]1C)O[C@@H]1O[C@H](CO)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O[C@@H]3OC[C@@H](O)[C@H](O)[C@H]3O)[C@H]2O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O)CO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C56H92O29/c1-20(18-75-49-43(71)39(67)36(64)29(14-57)78-49)7-10-56(74)21(2)34-28(85-56)12-26-24-6-5-22-11-23(8-9-54(22,3)25(24)13-33(62)55(26,34)4)77-51-45(73)41(69)46(32(17-60)81-51)82-53-48(84-52-44(72)40(68)37(65)30(15-58)79-52)47(38(66)31(16-59)80-53)83-50-42(70)35(63)27(61)19-76-50/h20-32,34-53,57-61,63-74H,5-19H2,1-4H3/t20-,21+,22+,23+,24-,25+,26+,27-,28+,29-,30-,31-,32-,34+,35+,36-,37-,38-,39+,40+,41-,42-,43-,44-,45-,46+,47+,48-,49-,50+,51-,52+,53+,54+,55-,56-/m1/s1

> <INCHI_KEY>
BHLUWQFMLVBJAR-ADZCVLLUSA-N

> <FORMULA>
C56H92O29

> <MOLECULAR_WEIGHT>
1229.323

> <EXACT_MASS>
1228.572426942

> <JCHEM_ACCEPTOR_COUNT>
29

> <JCHEM_ATOM_COUNT>
177

> <JCHEM_AVERAGE_POLARIZABILITY>
128.01634302353963

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
17

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,4S,6R,7S,8R,9S,12S,13S,16S,18S)-16-{[(2R,3R,4R,5R,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-6-hydroxy-7,9,13-trimethyl-6-[(3R)-3-methyl-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}butyl]-5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosan-10-one

> <ALOGPS_LOGP>
-1.30

> <JCHEM_LOGP>
-4.719945284666665

> <ALOGPS_LOGS>
-2.39

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
10

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.893032007554773

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.4630620543226

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6786119366911016

> <JCHEM_POLAR_SURFACE_AREA>
462.51000000000016

> <JCHEM_REFRACTIVITY>
279.7231999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
18

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.06e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,4S,6R,7S,8R,9S,12S,13S,16S,18S)-16-{[(2R,3R,4R,5R,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-6-hydroxy-7,9,13-trimethyl-6-[(3R)-3-methyl-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}butyl]-5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosan-10-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       5.013  -0.980   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.395   0.431   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.307   1.672   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.838   1.502   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.456   0.092   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.544  -1.149   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       7.162  -2.560   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       8.989   0.244   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.317   1.748   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.988   2.526   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      10.850   1.901   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      11.468   0.490   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.318  -0.534   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.470  -2.066   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      12.940   0.943   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      13.285   2.444   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      14.757   2.896   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      15.101   4.397   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      16.573   4.849   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      16.918   6.350   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      15.790   7.399   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      16.134   8.900   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      17.607   9.352   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      18.734   8.303   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      18.390   6.802   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      19.518   5.754   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0      20.206   8.756   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0      17.951  10.853   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      15.007   9.949   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      15.351  11.450   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      15.885   1.847   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      12.618  -0.534   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       8.219  -1.246   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       4.689   3.082   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       3.158   3.252   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       2.246   2.011   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       2.864   0.600   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       1.952  -0.640   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       0.421  -0.471   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -0.197   0.940   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       0.715   2.180   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      -1.728   1.109   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      -2.640  -0.132   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      -2.021  -1.542   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      -2.934  -2.783   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      -4.464  -2.613   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      -5.083  -1.203   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      -4.170   0.038   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0      -4.789   1.448   0.000  0.00  0.00           O+0
HETATM   50  O   UNK     0      -6.613  -1.033   0.000  0.00  0.00           O+0
HETATM   51  O   UNK     0      -5.376  -3.854   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0      -6.907  -3.684   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      -7.819  -4.925   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      -9.350  -4.755   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      -9.968  -3.345   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      -9.056  -2.104   0.000  0.00  0.00           C+0
HETATM   57  O   UNK     0      -7.525  -2.274   0.000  0.00  0.00           O+0
HETATM   58  C   UNK     0      -9.675  -0.694   0.000  0.00  0.00           C+0
HETATM   59  O   UNK     0     -11.205  -0.524   0.000  0.00  0.00           O+0
HETATM   60  O   UNK     0     -11.499  -3.175   0.000  0.00  0.00           O+0
HETATM   61  O   UNK     0     -10.262  -5.996   0.000  0.00  0.00           O+0
HETATM   62  C   UNK     0     -11.793  -5.827   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0     -12.705  -7.067   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0     -14.235  -6.898   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0     -14.854  -5.487   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0     -13.942  -4.247   0.000  0.00  0.00           C+0
HETATM   67  O   UNK     0     -12.411  -4.416   0.000  0.00  0.00           O+0
HETATM   68  O   UNK     0     -16.385  -5.318   0.000  0.00  0.00           O+0
HETATM   69  O   UNK     0     -15.148  -8.139   0.000  0.00  0.00           O+0
HETATM   70  O   UNK     0     -12.086  -8.478   0.000  0.00  0.00           O+0
HETATM   71  O   UNK     0      -7.201  -6.335   0.000  0.00  0.00           O+0
HETATM   72  C   UNK     0      -8.113  -7.576   0.000  0.00  0.00           C+0
HETATM   73  O   UNK     0      -7.495  -8.987   0.000  0.00  0.00           O+0
HETATM   74  C   UNK     0      -8.407 -10.227   0.000  0.00  0.00           C+0
HETATM   75  C   UNK     0      -9.937 -10.058   0.000  0.00  0.00           C+0
HETATM   76  C   UNK     0     -10.556  -8.647   0.000  0.00  0.00           C+0
HETATM   77  C   UNK     0      -9.644  -7.407   0.000  0.00  0.00           C+0
HETATM   78  O   UNK     0     -10.973  -6.629   0.000  0.00  0.00           O+0
HETATM   79  O   UNK     0     -11.894  -9.410   0.000  0.00  0.00           O+0
HETATM   80  O   UNK     0     -10.850 -11.298   0.000  0.00  0.00           O+0
HETATM   81  C   UNK     0      -7.788 -11.638   0.000  0.00  0.00           C+0
HETATM   82  O   UNK     0      -6.258 -11.807   0.000  0.00  0.00           O+0
HETATM   83  C   UNK     0      -2.315  -4.193   0.000  0.00  0.00           C+0
HETATM   84  O   UNK     0      -0.784  -4.363   0.000  0.00  0.00           O+0
HETATM   85  C   UNK     0       3.483  -0.810   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   37                                                  
CONECT    3    2    4   34                                                  
CONECT    4    3    5   10                                                  
CONECT    5    4    6    8   33                                             
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    5    9   13                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9    4                                                       
CONECT   11    9   12                                                       
CONECT   12   11   13   15   32                                             
CONECT   13   12    8   14                                                  
CONECT   14   13                                                            
CONECT   15   12   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   31                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   25                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   29                                                  
CONECT   23   22   24   28                                                  
CONECT   24   23   25   27                                                  
CONECT   25   24   20   26                                                  
CONECT   26   25                                                            
CONECT   27   24                                                            
CONECT   28   23                                                            
CONECT   29   22   30                                                       
CONECT   30   29                                                            
CONECT   31   17                                                            
CONECT   32   12                                                            
CONECT   33    5                                                            
CONECT   34    3   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37   41                                                  
CONECT   37   36    2   38   85                                             
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41   42                                                  
CONECT   41   40   36                                                       
CONECT   42   40   43                                                       
CONECT   43   42   44   48                                                  
CONECT   44   43   45                                                       
CONECT   45   44   46   83                                                  
CONECT   46   45   47   51                                                  
CONECT   47   46   48   50                                                  
CONECT   48   47   43   49                                                  
CONECT   49   48                                                            
CONECT   50   47                                                            
CONECT   51   46   52                                                       
CONECT   52   51   53   57                                                  
CONECT   53   52   54   71                                                  
CONECT   54   53   55   61                                                  
CONECT   55   54   56   60                                                  
CONECT   56   55   57   58                                                  
CONECT   57   56   52                                                       
CONECT   58   56   59                                                       
CONECT   59   58                                                            
CONECT   60   55                                                            
CONECT   61   54   62                                                       
CONECT   62   61   63   67                                                  
CONECT   63   62   64   70                                                  
CONECT   64   63   65   69                                                  
CONECT   65   64   66   68                                                  
CONECT   66   65   67                                                       
CONECT   67   66   62                                                       
CONECT   68   65                                                            
CONECT   69   64                                                            
CONECT   70   63                                                            
CONECT   71   53   72                                                       
CONECT   72   71   73   77                                                  
CONECT   73   72   74                                                       
CONECT   74   73   75   81                                                  
CONECT   75   74   76   80                                                  
CONECT   76   75   77   79                                                  
CONECT   77   76   72   78                                                  
CONECT   78   77                                                            
CONECT   79   76                                                            
CONECT   80   75                                                            
CONECT   81   74   82                                                       
CONECT   82   81                                                            
CONECT   83   45   84                                                       
CONECT   84   83                                                            
CONECT   85   37                                                            
MASTER        0    0    0    0    0    0    0    0   85    0  188    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₅₆H₉₂O₂₉

Average Mass

1229.3230 Da

Monoisotopic Mass

1228.57243 Da

IUPAC Name

(1R,2S,4S,6R,7S,8R,9S,12S,13S,16S,18S)-16-{[(2R,3R,4R,5R,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-6-hydroxy-7,9,13-trimethyl-6-[(3R)-3-methyl-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}butyl]-5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosan-10-one

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@H](CC[C@@]1(O)O[C@H]2C[C@H]3[C@@H]4CC[C@H]5C[C@H](CC[C@]5(C)[C@H]4CC(=O)[C@]3(C)[C@H]2[C@@H]1C)O[C@@H]1O[C@H](CO)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O[C@@H]3OC[C@@H](O)[C@H](O)[C@H]3O)[C@H]2O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O)CO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C56H92O29/c1-20(18-75-49-43(71)39(67)36(64)29(14-57)78-49)7-10-56(74)21(2)34-28(85-56)12-26-24-6-5-22-11-23(8-9-54(22,3)25(24)13-33(62)55(26,34)4)77-51-45(73)41(69)46(32(17-60)81-51)82-53-48(84-52-44(72)40(68)37(65)30(15-58)79-52)47(38(66)31(16-59)80-53)83-50-42(70)35(63)27(61)19-76-50/h20-32,34-53,57-61,63-74H,5-19H2,1-4H3/t20-,21+,22+,23+,24-,25+,26+,27-,28+,29-,30-,31-,32-,34+,35+,36-,37-,38-,39+,40+,41-,42-,43-,44-,45-,46+,47+,48-,49-,50+,51-,52+,53+,54+,55-,56-/m1/s1

InChI Key

BHLUWQFMLVBJAR-ADZCVLLUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Agave amica	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroidal saponins. These are saponins in which the aglycone moiety is a steroid. The steroidal aglycone is usually a spirostane, furostane, spirosolane, solanidane, or curcubitacin derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Steroidal saponins

Alternative Parents

Substituents

Steroidal saponin
Diterpene glycoside
Furostane-skeleton
Oligosaccharide
22-hydroxysteroid
Diterpenoid
Hydroxysteroid
12-oxosteroid
Oxosteroid
Terpene glycoside
Fatty acyl glycoside
Alkyl glycoside
Glycosyl compound
O-glycosyl compound
Oxane
Fatty acyl
Oxolane
Secondary alcohol
Hemiacetal
Ketone
Polyol
Acetal
Organoheterocyclic compound
Oxacycle
Alcohol
Organic oxide
Organic oxygen compound
Carbonyl group
Primary alcohol
Hydrocarbon derivative
Organooxygen compound
Aldehyde
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.3	ALOGPS
logP	-4.7	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	11.46	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	29	ChemAxon
Hydrogen Donor Count	17	ChemAxon
Polar Surface Area	462.51 Å²	ChemAxon
Rotatable Bond Count	18	ChemAxon
Refractivity	279.72 m³·mol⁻¹	ChemAxon
Polarizability	128.02 Å³	ChemAxon
Number of Rings	10	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00043827

Chemspider ID

9962834

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11788160

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Song X, Yuan Y, Wang S, Sun X, Zhang C, Gao P, Shi L: Pharmacokinetic comparisons of six steroid saponins in rat plasma following oral administration of crude and stir-fried Fructus Tribuli extracts by UHPLC-MS/MS. Biomed Chromatogr. 2021 Oct;35(10):e5151. doi: 10.1002/bmc.5151. Epub 2021 May 27. [PubMed:33939847 ]

Showing NP-Card for (-)-Polianthoside D (NP0079255)

MOL for NP0079255 ((-)-Polianthoside D)

3D MOL for NP0079255 ((-)-Polianthoside D)

3D SDF for NP0079255 ((-)-Polianthoside D)

3D-SDF for NP0079255 ((-)-Polianthoside D)

PDB for NP0079255 ((-)-Polianthoside D)

3D PDB for NP0079255 ((-)-Polianthoside D)

SMILES for NP0079255 ((-)-Polianthoside D)

INCHI for NP0079255 ((-)-Polianthoside D)

Structure for NP0079255 ((-)-Polianthoside D)

3D Structure for NP0079255 ((-)-Polianthoside D)