NP-MRD: Showing NP-Card for (+)-Hyperolactone B (NP0079096)

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Record Information

Version

1.0

Created at

2022-04-29 00:09:39 UTC

Updated at

2022-04-29 00:09:39 UTC

NP-MRD ID

NP0079096

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Hyperolactone B

Description

(+)-Hyperolactone B belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom. (+)-Hyperolactone B is found in Hypericum chinense and Hypericum chinese L.. It was first documented in 2011 (PMID: 21456531). Based on a literature review a significant number of articles have been published on (+)-Hyperolactone B (PMID: 35490355) (PMID: 35490354) (PMID: 35490353) (PMID: 35490352).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 33 34  0  0  0  0  0  0  0  0999 V2000
    3.4764    0.4844    1.5268 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5111   -0.2745    1.0498 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8821    0.0496   -0.2345 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6095    1.4911   -0.4591 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7487   -0.5667   -1.3412 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4301   -1.9528   -1.2773 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2517   -2.1413   -0.5701 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7649   -3.2203   -0.1455 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6409   -0.8220   -0.3913 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2449   -0.7141    0.6675 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3963   -0.0400    0.2698 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5081    0.4362    1.1465 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1552   -0.8249    1.7346 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5829    1.1274    0.3394 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3847    0.1358   -1.0425 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1454   -0.4545   -1.5898 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1529   -0.6014   -2.7902 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7937    1.3454    0.9564 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9548    0.2642    2.4722 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2094   -1.1323    1.6385 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0210    1.8337   -1.4272 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4910    1.6380   -0.4902 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9641    2.0740    0.4009 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8133   -0.3773   -1.1540 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3855   -0.1223   -2.2898 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1443    1.0600    1.9713 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0717   -0.5373    2.2944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4834   -1.4248    0.8575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4315   -1.3720    2.3775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0441    1.8853   -0.3025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2848    1.6902    0.9528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0765    0.4361   -0.3712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1476    0.6269   -1.6288 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 12  1  0
 12 14  1  0
 12 11  1  0
 11 15  2  0
 15 16  1  0
 16 17  2  0
 16  9  1  0
  9 10  1  1
  9  7  1  0
  7  8  2  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  1  6
  3  2  1  0
  2  1  2  3
 10 11  1  0
  3  9  1  0
 13 27  1  0
 13 28  1  0
 13 29  1  0
 12 26  1  1
 14 30  1  0
 14 31  1  0
 14 32  1  0
 15 33  1  0
  5 24  1  0
  5 25  1  0
  4 21  1  0
  4 22  1  0
  4 23  1  0
  2 20  1  0
  1 18  1  0
  1 19  1  0
M  END


  Mrv1652304292202092D          

 17 18  0  0  1  0            999 V2000
   -0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7846    1.0799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0396    1.8646    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2695    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7846   -0.2549    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7545    1.0799    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5391    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5391   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7545   -0.2549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4995   -1.0396    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9175    1.8887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6994    2.1518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3495    1.7987    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6674   -0.4849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5812   -1.3054    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4211   -0.1494    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  1  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  5 10  1  0  0  0  0
 10 11  2  0  0  0  0
  7 12  1  1  0  0  0
 12 13  2  0  0  0  0
  7 14  1  6  0  0  0
  1 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0079096

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C1=CC(=O)[C@@]2(O1)C(=O)OC[C@]2(C)C=C

> <INCHI_IDENTIFIER>
InChI=1S/C13H16O4/c1-5-12(4)7-16-11(15)13(12)10(14)6-9(17-13)8(2)3/h5-6,8H,1,7H2,2-4H3/t12-,13+/m0/s1

> <INCHI_KEY>
MZTZVVFRZLLCGP-QWHCGFSZSA-N

> <FORMULA>
C13H16O4

> <MOLECULAR_WEIGHT>
236.267

> <EXACT_MASS>
236.104858995

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
33

> <JCHEM_AVERAGE_POLARIZABILITY>
23.896220010172332

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5R,9S)-9-ethenyl-9-methyl-2-(propan-2-yl)-1,7-dioxaspiro[4.4]non-2-ene-4,6-dione

> <ALOGPS_LOGP>
1.39

> <JCHEM_LOGP>
2.2630119896666665

> <ALOGPS_LOGS>
-2.41

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.920531998438882

> <JCHEM_POLAR_SURFACE_AREA>
52.6

> <JCHEM_REFRACTIVITY>
62.841699999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.16e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5R,9S)-9-ethenyl-2-isopropyl-9-methyl-1,7-dioxaspiro[4.4]non-2-ene-4,6-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0      -0.000   0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.000   1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.465   2.016   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       1.941   3.481   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.370   0.770   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       1.465  -0.476   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       3.275   2.016   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.740   1.540   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       4.740  -0.000   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       3.275  -0.476   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.799  -1.941   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       3.579   3.526   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.039   4.017   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.519   3.358   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.246  -0.905   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.085  -2.437   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.653  -0.279   0.000  0.00  0.00           C+0
CONECT    1    2    6   15                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7   10                                             
CONECT    6    5    1                                                       
CONECT    7    5    8   12   14                                             
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9    5   11                                                  
CONECT   11   10                                                            
CONECT   12    7   13                                                       
CONECT   13   12                                                            
CONECT   14    7                                                            
CONECT   15    1   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₃H₁₆O₄

Average Mass

236.2670 Da

Monoisotopic Mass

236.10486 Da

IUPAC Name

(5R,9S)-9-ethenyl-9-methyl-2-(propan-2-yl)-1,7-dioxaspiro[4.4]non-2-ene-4,6-dione

Traditional Name

(5R,9S)-9-ethenyl-2-isopropyl-9-methyl-1,7-dioxaspiro[4.4]non-2-ene-4,6-dione

CAS Registry Number

Not Available

SMILES

CC(C)C1=CC(=O)[C@@]2(O1)C(=O)OC[C@]2(C)C=C

InChI Identifier

InChI=1S/C13H16O4/c1-5-12(4)7-16-11(15)13(12)10(14)6-9(17-13)8(2)3/h5-6,8H,1,7H2,2-4H3/t12-,13+/m0/s1

InChI Key

MZTZVVFRZLLCGP-QWHCGFSZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hypericum chinense	LOTUS Database	35616633
Hypericum chinese L.	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactones

Sub Class

Gamma butyrolactones

Direct Parent

Gamma butyrolactones

Alternative Parents

Substituents

3-furanone
Gamma butyrolactone
Dihydrofuran
Vinylogous ester
Oxolane
Carboxylic acid ester
Ketone
Carboxylic acid derivative
Oxacycle
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.39	ALOGPS
logP	2.26	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	52.6 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	62.84 m³·mol⁻¹	ChemAxon
Polarizability	23.9 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9032732

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10857441

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Baumbusch J, Blakey EP, Carapellotti AM, Dohmen M, Fick DM, Kagan SH, Melendez-Torres GJ, Morgan BE, Munsterman E, Resnick B, Young HM: Nurses and the decade of healthy ageing: An unprecedented opportunity. Int J Older People Nurs. 2022 May;17(3):e12469. doi: 10.1111/opn.12469. [PubMed:35490355 ]
Hill NL, Bratlee-Whitaker E, Wion RK, Madrigal C, Bhargava S, Mogle J: Factors that influence the emotional impact of memory problems in older adults: A qualitative descriptive study. Int J Older People Nurs. 2022 May;17(3):e12439. doi: 10.1111/opn.12439. Epub 2021 Dec 8. [PubMed:35490354 ]
Polastri M, Loforte A, Swol J: "Racing team" or "orchestra" approach? Two different perspectives on providing care in emergency and critical settings. Artif Organs. 2022 May 1. doi: 10.1111/aor.14274. [PubMed:35490353 ]
Wei YF, Wang L, Xia ZY, Gou M, Sun ZY, Lv WF, Tang YQ: Microbial communities in crude oil phase and filter-graded aqueous phase from a Daqing oilfield after polymer flooding. J Appl Microbiol. 2022 May 1. doi: 10.1111/jam.15603. [PubMed:35490352 ]
Wu Y, Du C, Hu C, Li Y, Xie Z: Biomimetic synthesis of hyperolactones. J Org Chem. 2011 May 20;76(10):4075-81. doi: 10.1021/jo102511x. Epub 2011 Apr 1. [PubMed:21456531 ]

Showing NP-Card for (+)-Hyperolactone B (NP0079096)

MOL for NP0079096 ((+)-Hyperolactone B)

3D MOL for NP0079096 ((+)-Hyperolactone B)

3D SDF for NP0079096 ((+)-Hyperolactone B)

3D-SDF for NP0079096 ((+)-Hyperolactone B)

PDB for NP0079096 ((+)-Hyperolactone B)

3D PDB for NP0079096 ((+)-Hyperolactone B)

SMILES for NP0079096 ((+)-Hyperolactone B)

INCHI for NP0079096 ((+)-Hyperolactone B)

Structure for NP0079096 ((+)-Hyperolactone B)

3D Structure for NP0079096 ((+)-Hyperolactone B)