NP-MRD: Showing NP-Card for (+)-Trigonotin C (NP0077313)

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Record Information

Version

1.0

Created at

2022-04-28 22:28:47 UTC

Updated at

2022-04-28 22:28:47 UTC

NP-MRD ID

NP0077313

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Trigonotin C

Description

(1S,4R,5R,17R,19S,20R)-8,20-dihydroxy-5-(4-hydroxy-3-methoxyphenyl)-19-(hydroxymethyl)-7,9-dimethoxy-19-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]Icosa-6,8,10,12-tetraene-3,14-dione belongs to the class of organic compounds known as lignan glycosides. These are aromatic polycyclic compounds containing a carbohydrate component glycosidically linked to a lignan moiety. They include 1-aryltetralin lactones. (+)-Trigonotin C is found in Trigonotis peduncularis. Based on a literature review very few articles have been published on (1S,4R,5R,17R,19S,20R)-8,20-dihydroxy-5-(4-hydroxy-3-methoxyphenyl)-19-(hydroxymethyl)-7,9-dimethoxy-19-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]Icosa-6,8,10,12-tetraene-3,14-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292200282D          

 51 56  0  0  1  0            999 V2000
    4.1999    1.3094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4665    2.0901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  2  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652304292200282D          

 51 56  0  0  1  0            999 V2000
    4.1999    1.3094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4665    2.0901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9237    2.7114    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1143    2.5519    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8476    1.7712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1955    0.8593    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3905    1.1499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1390    0.8032    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1238    0.3692    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3144    0.2098    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7716    0.8310    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9525    0.9295    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7930    1.7389    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4954    2.2330    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0382    1.6118    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5993    2.2165    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7620    3.0137    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5715    3.1732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8381    3.9539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0261    1.6407    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3506    0.8822    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1440    0.2220    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1805   -0.5365    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9997   -0.6347    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4943    0.0255    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1698    0.7840    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6644    1.4443    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3134   -0.0727    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3242   -1.3932    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3141   -1.1968    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0104   -1.9553    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2690    2.3762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5448    2.2410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1903    3.4921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6475    4.1134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9142    4.8941    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7236    5.0536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2664    4.4323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9998    3.6516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9902    5.8343    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3713    5.5154    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6380    6.2961    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2760    2.2496    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8188    1.6283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5522    0.8476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7427    0.6881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0950    0.2263    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8283   -0.5544    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6282    1.7878    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5426    3.0303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3520    3.1898    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 11 15  1  0  0  0  0
 15 16  1  6  0  0  0
 14 17  1  1  0  0  0
 17 18  1  0  0  0  0
  4 18  1  0  0  0  0
 18 19  2  0  0  0  0
 13 20  1  1  0  0  0
 21 20  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 21 26  1  0  0  0  0
 26 27  1  1  0  0  0
 25 28  1  6  0  0  0
 24 29  1  1  0  0  0
 23 30  1  6  0  0  0
 30 31  1  0  0  0  0
 13 32  1  6  0  0  0
 32 33  1  0  0  0  0
  3 34  1  6  0  0  0
 34 35  2  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  2  0  0  0  0
 34 39  1  0  0  0  0
 37 40  1  0  0  0  0
 36 41  1  0  0  0  0
 41 42  1  0  0  0  0
  2 43  1  0  0  0  0
 43 44  2  0  0  0  0
 44 45  1  0  0  0  0
 45 46  2  0  0  0  0
  1 46  1  0  0  0  0
 45 47  1  0  0  0  0
 47 48  1  0  0  0  0
 44 49  1  0  0  0  0
 43 50  1  0  0  0  0
 50 51  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0077313

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC2=C([C@H]([C@@H]3C(=C2)C(=O)OC[C@H]2O[C@@](CO)(O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)[C@@H](OC3=O)[C@@H]2O)C2=CC(OC)=C(O)C=C2)C(OC)=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C33H38O18/c1-44-16-7-12(4-5-15(16)36)20-21-13(8-17(45-2)24(38)28(21)46-3)6-14-22(20)31(43)49-29-25(39)19(10-47-30(14)42)50-33(29,11-35)51-32-27(41)26(40)23(37)18(9-34)48-32/h4-8,18-20,22-23,25-27,29,32,34-41H,9-11H2,1-3H3/t18-,19-,20-,22+,23-,25-,26+,27-,29+,32-,33+/m1/s1

> <INCHI_KEY>
VZLIQNLXUYMNAA-HWWKUVKWSA-N

> <FORMULA>
C33H38O18

> <MOLECULAR_WEIGHT>
722.649

> <EXACT_MASS>
722.205814384

> <JCHEM_ACCEPTOR_COUNT>
16

> <JCHEM_ATOM_COUNT>
89

> <JCHEM_AVERAGE_POLARIZABILITY>
67.77255901337948

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
8

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,4R,5R,17R,19S,20R)-8,20-dihydroxy-5-(4-hydroxy-3-methoxyphenyl)-19-(hydroxymethyl)-7,9-dimethoxy-19-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,15,18-trioxatetracyclo[15.2.1.0^{4,13}.0^{6,11}]icosa-6(11),7,9,12-tetraene-3,14-dione

> <ALOGPS_LOGP>
0.29

> <JCHEM_LOGP>
-0.8218040029999991

> <ALOGPS_LOGS>
-2.49

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.003869003176185

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.111353399918968

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810849128024266

> <JCHEM_POLAR_SURFACE_AREA>
269.82

> <JCHEM_REFRACTIVITY>
166.68059999999994

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.35e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4R,5R,17R,19S,20R)-8,20-dihydroxy-5-(4-hydroxy-3-methoxyphenyl)-19-(hydroxymethyl)-7,9-dimethoxy-19-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,15,18-trioxatetracyclo[15.2.1.0^{4,13}.0^{6,11}]icosa-6(11),7,9,12-tetraene-3,14-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       7.840   2.444   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.338   3.902   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.324   5.061   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.813   4.764   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.316   3.306   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.965   1.604   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.329   2.147   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       7.726   1.499   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0       5.831   0.689   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       4.320   0.392   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.307   1.551   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       1.778   1.735   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       1.480   3.246   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.791   4.168   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.805   3.009   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       4.852   4.138   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       3.289   5.626   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       4.800   5.923   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       5.298   7.381   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      -0.049   3.063   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -0.655   1.647   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       0.269   0.414   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -0.337  -1.002   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.866  -1.185   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -2.789   0.048   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -2.184   1.464   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -3.107   2.696   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0      -4.318  -0.136   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      -2.472  -2.601   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       0.586  -2.234   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -0.019  -3.650   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       0.502   4.436   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -1.017   4.183   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       7.822   6.519   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       6.809   7.678   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       7.306   9.136   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       8.817   9.433   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       9.831   8.274   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       9.333   6.816   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0       9.315  10.891   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0       6.293  10.295   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0       6.791  11.753   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       9.848   4.199   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      10.862   3.040   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      10.364   1.582   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0       8.853   1.284   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      11.377   0.422   0.000  0.00  0.00           O+0
HETATM   48  C   UNK     0      10.880  -1.035   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0      12.373   3.337   0.000  0.00  0.00           O+0
HETATM   50  O   UNK     0      10.346   5.657   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0      11.857   5.954   0.000  0.00  0.00           C+0
CONECT    1    2    6   46                                                  
CONECT    2    1    3   43                                                  
CONECT    3    2    4   34                                                  
CONECT    4    3    5   18                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   15                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   20   32                                             
CONECT   14   13   15   17                                                  
CONECT   15   14   11   16                                                  
CONECT   16   15                                                            
CONECT   17   14   18                                                       
CONECT   18   17    4   19                                                  
CONECT   19   18                                                            
CONECT   20   13   21                                                       
CONECT   21   20   22   26                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   30                                                  
CONECT   24   23   25   29                                                  
CONECT   25   24   26   28                                                  
CONECT   26   25   21   27                                                  
CONECT   27   26                                                            
CONECT   28   25                                                            
CONECT   29   24                                                            
CONECT   30   23   31                                                       
CONECT   31   30                                                            
CONECT   32   13   33                                                       
CONECT   33   32                                                            
CONECT   34    3   35   39                                                  
CONECT   35   34   36                                                       
CONECT   36   35   37   41                                                  
CONECT   37   36   38   40                                                  
CONECT   38   37   39                                                       
CONECT   39   38   34                                                       
CONECT   40   37                                                            
CONECT   41   36   42                                                       
CONECT   42   41                                                            
CONECT   43    2   44   50                                                  
CONECT   44   43   45   49                                                  
CONECT   45   44   46   47                                                  
CONECT   46   45    1                                                       
CONECT   47   45   48                                                       
CONECT   48   47                                                            
CONECT   49   44                                                            
CONECT   50   43   51                                                       
CONECT   51   50                                                            
MASTER        0    0    0    0    0    0    0    0   51    0  112    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₃H₃₈O₁₈

Average Mass

722.6490 Da

Monoisotopic Mass

722.20581 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

COC1=CC2=C([C@H]([C@@H]3C(=C2)C(=O)OC[C@H]2O[C@@](CO)(O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)[C@@H](OC3=O)[C@@H]2O)C2=CC(OC)=C(O)C=C2)C(OC)=C1O

InChI Identifier

InChI=1S/C33H38O18/c1-44-16-7-12(4-5-15(16)36)20-21-13(8-17(45-2)24(38)28(21)46-3)6-14-22(20)31(43)49-29-25(39)19(10-47-30(14)42)50-33(29,11-35)51-32-27(41)26(40)23(37)18(9-34)48-32/h4-8,18-20,22-23,25-27,29,32,34-41H,9-11H2,1-3H3/t18-,19-,20-,22+,23-,25-,26+,27-,29+,32-,33+/m1/s1

InChI Key

VZLIQNLXUYMNAA-HWWKUVKWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Trigonotis peduncularis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as lignan glycosides. These are aromatic polycyclic compounds containing a carbohydrate component glycosidically linked to a lignan moiety. They include 1-aryltetralin lactones.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Lignan glycosides

Sub Class

Not Available

Direct Parent

Lignan glycosides

Alternative Parents

Substituents

Lignan glycoside
Lignan lactone
1-aryltetralin lignan
Disaccharide
Glycosyl compound
O-glycosyl compound
Methoxyphenol
Naphthalene
Phenoxy compound
Anisole
Methoxybenzene
Phenol ether
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Ketal
Phenol
Monocyclic benzene moiety
Dicarboxylic acid or derivatives
Benzenoid
Oxane
Tetrahydrofuran
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Secondary alcohol
Lactone
Carboxylic acid ester
Polyol
Organoheterocyclic compound
Oxacycle
Ether
Acetal
Carboxylic acid derivative
Organooxygen compound
Alcohol
Carbonyl group
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Primary alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.29	ALOGPS
logP	-0.82	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	9.11	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	16	ChemAxon
Hydrogen Donor Count	8	ChemAxon
Polar Surface Area	269.82 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	166.68 m³·mol⁻¹	ChemAxon
Polarizability	67.77 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162979885

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (+)-Trigonotin C (NP0077313)

MOL for NP0077313 ((+)-Trigonotin C)

3D MOL for NP0077313 ((+)-Trigonotin C)

3D SDF for NP0077313 ((+)-Trigonotin C)

3D-SDF for NP0077313 ((+)-Trigonotin C)

PDB for NP0077313 ((+)-Trigonotin C)

3D PDB for NP0077313 ((+)-Trigonotin C)

SMILES for NP0077313 ((+)-Trigonotin C)

INCHI for NP0077313 ((+)-Trigonotin C)

Structure for NP0077313 ((+)-Trigonotin C)

3D Structure for NP0077313 ((+)-Trigonotin C)