NP-MRD: Showing NP-Card for Nigroside A (NP0071525)

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Record Information

Version

1.0

Created at

2022-04-28 16:53:52 UTC

Updated at

2022-04-28 16:53:52 UTC

NP-MRD ID

NP0071525

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Nigroside A

Description

(1S,2S,5S,7S,10R,11S,13S,14S,15S)-5-{[(2R,3R,4R,5S,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-14-[(1S)-1-hydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-13-yl (4R)-4-methyl-5-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentanoate belongs to the class of organic compounds known as steroidal saponins. These are saponins in which the aglycone moiety is a steroid. The steroidal aglycone is usually a spirostane, furostane, spirosolane, solanidane, or curcubitacin derivative. Nigroside A is found in Paris polyphylla . Based on a literature review very few articles have been published on (1S,2S,5S,7S,10R,11S,13S,14S,15S)-5-{[(2R,3R,4R,5S,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-14-[(1S)-1-hydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-13-yl (4R)-4-methyl-5-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentanoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282218532D          

 85 93  0  0  1  0            999 V2000
    4.2475    2.1537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5278    1.3777    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9960    0.7470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1838    0.8922    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9035    1.6682    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4354    2.2989    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0914    1.8134    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5596    1.1827    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8399    0.4067    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6520    0.2615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7475    1.3279    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4672    2.1038    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9990    2.7345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8111    2.5893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3574    2.0770    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5867    1.2845    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0962    0.8215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.0513   -3.8397    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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    5.3399    1.2325    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   10.1551    4.7263    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.9672    4.5811    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.4990    5.2118    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.3111    5.0666    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.5914    4.2907    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.0596    3.6600    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2475    3.8052    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.4035    4.1455    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   10.4066    6.1330    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  9 10  1  0  0  0  0
  4 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  7 14  1  6  0  0  0
 12 15  1  0  0  0  0
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 16 17  1  0  0  0  0
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 18 19  1  0  0  0  0
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 29 30  1  0  0  0  0
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M  END

     RDKit          3D

179187  0  0  0  0  0  0  0  0999 V2000
    6.0733   -4.4001   -0.8946 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9488   -3.2152   -0.5813 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.9224   -3.7076    0.3315 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1887   -2.1790    0.1454 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.0515   -0.9641    0.4942 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.8706   -0.7347   -0.6080 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2630   -0.7358   -0.6018 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8281   -0.9549    0.4759 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.9132   -0.4707   -1.9022 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4018   -0.4505   -1.7793 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0128   -1.7149   -1.2800 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.6837   -2.8921   -2.2035 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5383   -1.5208   -1.2965 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.3612    1.3544    4.4486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4666    2.6658    4.9033 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0830   -0.0684    2.5555 C   0  0  1  0  0  0  0  0  0  0  0  0
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  -11.5007   -3.1752    1.1756 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.0512   -4.3072    0.6346 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1418   -4.9587   -0.3941 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652304282218532D          

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    9.3717    2.6890    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.5596    2.8342    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   10.4641    1.7679    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.7157    3.1745    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.1551    4.7263    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.9672    4.5811    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.4990    5.2118    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.3111    5.0666    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.5914    4.2907    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.0596    3.6600    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2475    3.8052    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.4035    4.1455    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8429    5.6973    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.2187    5.9877    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5308    5.0168    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0626    5.6475    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.7823    6.4234    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3142    7.0541    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.1263    6.9089    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.4066    6.1330    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.8748    5.5023    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.5576    5.0393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   10.6581    7.5396    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0339    7.8300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2217    7.9752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8429    4.0458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0308    4.1910    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
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M  END
> <DATABASE_ID>
NP0071525

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](CCC(=O)O[C@H]1C[C@H]2[C@@H]3CC[C@H]4C[C@H](CC[C@]4(C)[C@H]3CC[C@]2(C)[C@H]1[C@H](C)O)O[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O[C@@H]3OC[C@@H](O)[C@H](O)[C@H]3O)[C@H]2O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O)CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C56H94O29/c1-21(19-75-50-44(72)40(68)37(65)30(15-57)79-50)5-8-34(63)78-29-14-27-25-7-6-23-13-24(9-11-55(23,3)26(25)10-12-56(27,4)35(29)22(2)61)77-52-46(74)42(70)47(33(18-60)82-52)83-54-49(85-53-45(73)41(69)38(66)31(16-58)80-53)48(39(67)32(17-59)81-54)84-51-43(71)36(64)28(62)20-76-51/h21-33,35-54,57-62,64-74H,5-20H2,1-4H3/t21-,22+,23+,24+,25-,26+,27+,28-,29+,30-,31-,32-,33-,35+,36+,37+,38+,39-,40+,41+,42-,43-,44-,45-,46-,47-,48+,49-,50-,51+,52-,53+,54+,55+,56+/m1/s1

> <INCHI_KEY>
IQNWMIAMBMYYER-JGXHYXITSA-N

> <FORMULA>
C56H94O29

> <MOLECULAR_WEIGHT>
1231.339

> <EXACT_MASS>
1230.588077007

> <JCHEM_ACCEPTOR_COUNT>
28

> <JCHEM_ATOM_COUNT>
179

> <JCHEM_AVERAGE_POLARIZABILITY>
127.88388142825013

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
17

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2S,5S,7S,10R,11S,13S,14S,15S)-5-{[(2R,3R,4R,5S,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-14-[(1S)-1-hydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-13-yl (4R)-4-methyl-5-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentanoate

> <ALOGPS_LOGP>
-1.32

> <JCHEM_LOGP>
-4.830475156999999

> <ALOGPS_LOGS>
-2.53

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
9

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.096424579177524

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.677235627299808

> <JCHEM_PKA_STRONGEST_BASIC>
-3.672686771973492

> <JCHEM_POLAR_SURFACE_AREA>
462.51000000000016

> <JCHEM_REFRACTIVITY>
280.99019999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
21

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.61e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,5S,7S,10R,11S,13S,14S,15S)-5-{[(2R,3R,4R,5S,6R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-2-yl]oxy}-14-[(1S)-1-hydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-13-yl (4R)-4-methyl-5-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pentanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       7.929   4.020   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.452   2.572   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.459   1.394   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.943   1.666   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.420   3.114   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.413   4.291   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.904   3.385   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.911   2.208   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.434   0.759   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.950   0.488   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.395   2.479   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.872   3.927   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.865   5.104   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.381   4.833   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.667   3.877   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.095   2.398   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.179   1.534   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -2.544   1.875   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -2.815   0.359   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -4.263  -0.165   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -1.637  -0.634   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -1.908  -2.150   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.731  -3.143   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.002  -4.659   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       0.175  -5.652   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -0.096  -7.167   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -1.544  -7.691   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -1.815  -9.207   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -0.638 -10.199   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.810  -9.676   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.081  -8.160   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       2.530  -7.637   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0       1.988 -10.669   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      -0.909 -11.715   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -3.264  -9.730   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      -4.441  -8.737   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0       0.717  -2.620   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -1.612   5.093   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -3.138   4.882   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -1.032   6.519   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0       0.200   5.313   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       4.897   4.562   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0       9.968   2.301   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      10.961   3.478   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      10.437   4.926   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      11.430   6.104   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      12.946   5.833   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      13.469   4.384   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      12.477   3.207   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      13.000   1.759   0.000  0.00  0.00           O+0
HETATM   51  O   UNK     0      14.985   4.113   0.000  0.00  0.00           O+0
HETATM   52  O   UNK     0      13.939   7.010   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0      15.455   6.739   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      16.447   7.916   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      17.963   7.645   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      18.487   6.197   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      17.494   5.019   0.000  0.00  0.00           C+0
HETATM   58  O   UNK     0      15.978   5.291   0.000  0.00  0.00           O+0
HETATM   59  C   UNK     0      18.017   3.571   0.000  0.00  0.00           C+0
HETATM   60  O   UNK     0      19.533   3.300   0.000  0.00  0.00           O+0
HETATM   61  O   UNK     0      20.003   5.926   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0      18.956   8.822   0.000  0.00  0.00           O+0
HETATM   63  C   UNK     0      20.472   8.551   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      21.465   9.729   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      22.981   9.458   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0      23.504   8.009   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0      22.511   6.832   0.000  0.00  0.00           C+0
HETATM   68  O   UNK     0      20.995   7.103   0.000  0.00  0.00           O+0
HETATM   69  O   UNK     0      25.020   7.738   0.000  0.00  0.00           O+0
HETATM   70  O   UNK     0      23.973  10.635   0.000  0.00  0.00           O+0
HETATM   71  O   UNK     0      20.942  11.177   0.000  0.00  0.00           O+0
HETATM   72  O   UNK     0      15.924   9.365   0.000  0.00  0.00           O+0
HETATM   73  C   UNK     0      16.917  10.542   0.000  0.00  0.00           C+0
HETATM   74  O   UNK     0      16.394  11.990   0.000  0.00  0.00           O+0
HETATM   75  C   UNK     0      17.386  13.168   0.000  0.00  0.00           C+0
HETATM   76  C   UNK     0      18.902  12.897   0.000  0.00  0.00           C+0
HETATM   77  C   UNK     0      19.426  11.448   0.000  0.00  0.00           C+0
HETATM   78  C   UNK     0      18.433  10.271   0.000  0.00  0.00           C+0
HETATM   79  O   UNK     0      19.708   9.407   0.000  0.00  0.00           O+0
HETATM   80  O   UNK     0      20.811  12.120   0.000  0.00  0.00           O+0
HETATM   81  O   UNK     0      19.895  14.074   0.000  0.00  0.00           O+0
HETATM   82  C   UNK     0      16.863  14.616   0.000  0.00  0.00           C+0
HETATM   83  O   UNK     0      15.347  14.887   0.000  0.00  0.00           O+0
HETATM   84  C   UNK     0      10.907   7.552   0.000  0.00  0.00           C+0
HETATM   85  O   UNK     0       9.391   7.823   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3   43                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   10                                                  
CONECT    5    4    6    7   42                                             
CONECT    6    5    1                                                       
CONECT    7    5    8   14                                                  
CONECT    8    7    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9    4                                                       
CONECT   11    8   12   17                                                  
CONECT   12   11   13   15   41                                             
CONECT   13   12   14                                                       
CONECT   14   13    7                                                       
CONECT   15   12   16   38                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16   11                                                       
CONECT   18   16   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   37                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   35                                                  
CONECT   29   28   30   34                                                  
CONECT   30   29   31   33                                                  
CONECT   31   30   26   32                                                  
CONECT   32   31                                                            
CONECT   33   30                                                            
CONECT   34   29                                                            
CONECT   35   28   36                                                       
CONECT   36   35                                                            
CONECT   37   23                                                            
CONECT   38   15   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38                                                            
CONECT   41   12                                                            
CONECT   42    5                                                            
CONECT   43    2   44                                                       
CONECT   44   43   45   49                                                  
CONECT   45   44   46                                                       
CONECT   46   45   47   84                                                  
CONECT   47   46   48   52                                                  
CONECT   48   47   49   51                                                  
CONECT   49   48   44   50                                                  
CONECT   50   49                                                            
CONECT   51   48                                                            
CONECT   52   47   53                                                       
CONECT   53   52   54   58                                                  
CONECT   54   53   55   72                                                  
CONECT   55   54   56   62                                                  
CONECT   56   55   57   61                                                  
CONECT   57   56   58   59                                                  
CONECT   58   57   53                                                       
CONECT   59   57   60                                                       
CONECT   60   59                                                            
CONECT   61   56                                                            
CONECT   62   55   63                                                       
CONECT   63   62   64   68                                                  
CONECT   64   63   65   71                                                  
CONECT   65   64   66   70                                                  
CONECT   66   65   67   69                                                  
CONECT   67   66   68                                                       
CONECT   68   67   63                                                       
CONECT   69   66                                                            
CONECT   70   65                                                            
CONECT   71   64                                                            
CONECT   72   54   73                                                       
CONECT   73   72   74   78                                                  
CONECT   74   73   75                                                       
CONECT   75   74   76   82                                                  
CONECT   76   75   77   81                                                  
CONECT   77   76   78   80                                                  
CONECT   78   77   73   79                                                  
CONECT   79   78                                                            
CONECT   80   77                                                            
CONECT   81   76                                                            
CONECT   82   75   83                                                       
CONECT   83   82                                                            
CONECT   84   46   85                                                       
CONECT   85   84                                                            
MASTER        0    0    0    0    0    0    0    0   85    0  186    0
END

View in JSmol

Synonyms

Value

Source

Generator

Chemical Formula

C₅₆H₉₄O₂₉

Average Mass

1231.3390 Da

Monoisotopic Mass

1230.58808 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@H](CCC(=O)O[C@H]1C[C@H]2[C@@H]3CC[C@H]4C[C@H](CC[C@]4(C)[C@H]3CC[C@]2(C)[C@H]1[C@H](C)O)O[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O[C@@H]3OC[C@@H](O)[C@H](O)[C@H]3O)[C@H]2O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O)CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C56H94O29/c1-21(19-75-50-44(72)40(68)37(65)30(15-57)79-50)5-8-34(63)78-29-14-27-25-7-6-23-13-24(9-11-55(23,3)26(25)10-12-56(27,4)35(29)22(2)61)77-52-46(74)42(70)47(33(18-60)82-52)83-54-49(85-53-45(73)41(69)38(66)31(16-58)80-53)48(39(67)32(17-59)81-54)84-51-43(71)36(64)28(62)20-76-51/h21-33,35-54,57-62,64-74H,5-20H2,1-4H3/t21-,22+,23+,24+,25-,26+,27+,28-,29+,30-,31-,32-,33-,35+,36+,37+,38+,39-,40+,41+,42-,43-,44-,45-,46-,47-,48+,49-,50-,51+,52-,53+,54+,55+,56+/m1/s1

InChI Key

IQNWMIAMBMYYER-JGXHYXITSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Paris polyphylla	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroidal saponins. These are saponins in which the aglycone moiety is a steroid. The steroidal aglycone is usually a spirostane, furostane, spirosolane, solanidane, or curcubitacin derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Steroidal saponins

Alternative Parents

Substituents

Steroidal saponin
Furostane-skeleton
Oligosaccharide
Steroid ester
20-hydroxysteroid
Hydroxysteroid
Fatty acyl glycoside
Alkyl glycoside
O-glycosyl compound
Glycosyl compound
Fatty acyl
Oxane
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.3	ALOGPS
logP	-4.8	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	11.68	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	28	ChemAxon
Hydrogen Donor Count	17	ChemAxon
Polar Surface Area	462.51 Å²	ChemAxon
Rotatable Bond Count	21	ChemAxon
Refractivity	280.99 m³·mol⁻¹	ChemAxon
Polarizability	127.88 Å³	ChemAxon
Number of Rings	9	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163021447

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Nigroside A (NP0071525)

MOL for NP0071525 (Nigroside A)

3D MOL for NP0071525 (Nigroside A)

3D SDF for NP0071525 (Nigroside A)

3D-SDF for NP0071525 (Nigroside A)

PDB for NP0071525 (Nigroside A)

3D PDB for NP0071525 (Nigroside A)

SMILES for NP0071525 (Nigroside A)

INCHI for NP0071525 (Nigroside A)

Structure for NP0071525 (Nigroside A)

3D Structure for NP0071525 (Nigroside A)