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Record Information
Version1.0
Created at2022-04-28 16:49:54 UTC
Updated at2022-04-28 16:49:54 UTC
NP-MRD IDNP0071451
Secondary Accession NumbersNone
Natural Product Identification
Common NameLLG 5
Description(2R,4S,5R,6R)-5-[(2-{[(2R,4S,5R,6R)-2-carboxy-6-[(1R,2R)-1,3-dihydroxy-2-methoxypropyl]-5-[(1,2-dihydroxyethylidene)amino]-4-hydroxyoxan-2-yl]oxy}-1-hydroxyethylidene)amino]-2-({[(2R,3R,4S,6R)-6-carboxy-6-{[(2S,3R,4S,5S,6R)-2-{[(2R,3R,4R,5R,6R)-6-{[(2S,3S,4R,16S)-2-{[(2R)-1,2-dihydroxydocosylidene]amino}-3,4-dihydroxy-16-methyloctadecyl]oxy}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxy}-4-hydroxy-2-[(1S,2R)-1,2,3-trihydroxypropyl]oxan-3-yl]-C-hydroxycarbonimidoyl}methoxy)-4-hydroxy-6-[(1S,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid belongs to the class of organic compounds known as glycosphingolipids. These are sphingolipids containing a saccharide moiety glycosidically attached to the sphingoid base. Although saccharide moieties are mostly O-glycosidically linked to the ceramide moiety, other sphingolipids with glycosidic bonds of other types (e.G. S-,C-, or N-type) has been reported. LLG 5 is found in Linckia laevigata. Based on a literature review very few articles have been published on (2R,4S,5R,6R)-5-[(2-{[(2R,4S,5R,6R)-2-carboxy-6-[(1R,2R)-1,3-dihydroxy-2-methoxypropyl]-5-[(1,2-dihydroxyethylidene)amino]-4-hydroxyoxan-2-yl]oxy}-1-hydroxyethylidene)amino]-2-({[(2R,3R,4S,6R)-6-carboxy-6-{[(2S,3R,4S,5S,6R)-2-{[(2R,3R,4R,5R,6R)-6-{[(2S,3S,4R,16S)-2-{[(2R)-1,2-dihydroxydocosylidene]amino}-3,4-dihydroxy-16-methyloctadecyl]oxy}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxy}-4-hydroxy-2-[(1S,2R)-1,2,3-trihydroxypropyl]oxan-3-yl]-C-hydroxycarbonimidoyl}methoxy)-4-hydroxy-6-[(1S,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid.
Structure
Thumb
Synonyms
ValueSource
(2R,4S,5R,6R)-5-[(2-{[(2R,4S,5R,6R)-2-carboxy-6-[(1R,2R)-1,3-dihydroxy-2-methoxypropyl]-5-[(1,2-dihydroxyethylidene)amino]-4-hydroxyoxan-2-yl]oxy}-1-hydroxyethylidene)amino]-2-({[(2R,3R,4S,6R)-6-carboxy-6-{[(2S,3R,4S,5S,6R)-2-{[(2R,3R,4R,5R,6R)-6-{[(2S,3S,4R,16S)-2-{[(2R)-1,2-dihydroxydocosylidene]amino}-3,4-dihydroxy-16-methyloctadecyl]oxy}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxy}-4-hydroxy-2-[(1S,2R)-1,2,3-trihydroxypropyl]oxan-3-yl]-C-hydroxycarbonimidoyl}methoxy)-4-hydroxy-6-[(1S,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylateGenerator
Chemical FormulaC87H156N4O42
Average Mass1930.1910 Da
Monoisotopic Mass1929.01942 Da
IUPAC Name(2R,4S,5R,6R)-2-({[(2R,3R,4S,6R)-6-carboxy-6-({[(2R,3R,4S,6R)-6-carboxy-6-{[(2S,3R,4S,5S,6R)-2-{[(2R,3R,4R,5R,6R)-6-{[(2S,3S,4R,16S)-3,4-dihydroxy-2-[(2R)-2-hydroxydocosanamido]-16-methyloctadecyl]oxy}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxy}-4-hydroxy-2-[(1S,2R)-1,2,3-trihydroxypropyl]oxan-3-yl]carbamoyl}methoxy)-4-hydroxy-2-[(1S,2R)-1,2,3-trihydroxypropyl]oxan-3-yl]carbamoyl}methoxy)-6-[(1R,2R)-1,3-dihydroxy-2-methoxypropyl]-4-hydroxy-5-(2-hydroxyacetamido)oxane-2-carboxylic acid
Traditional Name(2R,4S,5R,6R)-2-({[(2R,3R,4S,6R)-6-carboxy-6-({[(2R,3R,4S,6R)-6-carboxy-6-{[(2S,3R,4S,5S,6R)-2-{[(2R,3R,4R,5R,6R)-6-{[(2S,3S,4R,16S)-3,4-dihydroxy-2-[(2R)-2-hydroxydocosanamido]-16-methyloctadecyl]oxy}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxy}-4-hydroxy-2-[(1S,2R)-1,2,3-trihydroxypropyl]oxan-3-yl]carbamoyl}methoxy)-4-hydroxy-2-[(1S,2R)-1,2,3-trihydroxypropyl]oxan-3-yl]carbamoyl}methoxy)-6-[(1R,2R)-1,3-dihydroxy-2-methoxypropyl]-4-hydroxy-5-(2-hydroxyacetamido)oxane-2-carboxylic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCCCCCCCC[C@@H](O)C(=O)N[C@@H](CO[C@@H]1O[C@H](CO)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C[C@H](O)[C@@H](NC(=O)CO[C@@]4(C[C@H](O)[C@@H](NC(=O)CO[C@@]5(C[C@H](O)[C@@H](NC(=O)CO)[C@@H](O5)[C@@H](O)[C@@H](CO)OC)C(O)=O)[C@@H](O4)[C@@H](O)[C@H](O)CO)C(O)=O)[C@@H](O3)[C@@H](O)[C@H](O)CO)C(O)=O)[C@H]2O)[C@H](O)[C@H]1O)[C@H](O)[C@H](O)CCCCCCCCCCC[C@@H](C)CC
InChI Identifier
InChI=1S/C87H156N4O42/c1-5-7-8-9-10-11-12-13-14-15-16-17-18-19-22-26-29-32-35-51(99)79(116)88-49(66(108)50(98)34-31-28-25-23-20-21-24-27-30-33-48(3)6-2)45-124-80-72(114)71(113)74(59(43-96)128-80)129-81-73(115)78(70(112)58(42-95)127-81)133-87(84(121)122)38-54(102)64(76(132-87)68(110)56(104)40-93)91-62(107)46-125-85(82(117)118)36-52(100)63(75(130-85)67(109)55(103)39-92)90-61(106)47-126-86(83(119)120)37-53(101)65(89-60(105)44-97)77(131-86)69(111)57(41-94)123-4/h48-59,63-78,80-81,92-104,108-115H,5-47H2,1-4H3,(H,88,116)(H,89,105)(H,90,106)(H,91,107)(H,117,118)(H,119,120)(H,121,122)/t48-,49-,50+,51+,52-,53-,54-,55+,56+,57+,58+,59+,63+,64+,65+,66-,67-,68-,69-,70-,71+,72+,73+,74-,75+,76+,77+,78-,80+,81-,85+,86+,87+/m0/s1
InChI KeyGIWFNSRXDXVYBS-LAYLCDIFSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Linckia laevigataAnimalia
Chemical Taxonomy
Description Belongs to the class of organic compounds known as glycosphingolipids. These are sphingolipids containing a saccharide moiety glycosidically attached to the sphingoid base. Although saccharide moieties are mostly O-glycosidically linked to the ceramide moiety, other sphingolipids with glycosidic bonds of other types (e.G. S-,C-, or N-type) has been reported.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSphingolipids
Sub ClassGlycosphingolipids
Direct ParentGlycosphingolipids
Alternative Parents
Substituents
  • Glycosphingolipid
  • Oligosaccharide
  • Neuraminic acid
  • Fatty acyl glycoside
  • C-glucuronide
  • Alkyl glycoside
  • O-glycosyl compound
  • Glycosyl compound
  • C-glycosyl compound
  • Tricarboxylic acid or derivatives
  • Ketal
  • Fatty acyl
  • Pyran
  • Oxane
  • Secondary alcohol
  • Oxacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Polyol
  • Ether
  • Dialkyl ether
  • Carboxylic acid
  • Carboxylic acid derivative
  • Carboximidic acid derivative
  • Carboximidic acid
  • Acetal
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.93ALOGPS
logP-0.48ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)2.35ChemAxon
pKa (Strongest Basic)-3.9ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count42ChemAxon
Hydrogen Donor Count28ChemAxon
Polar Surface Area754.66 ŲChemAxon
Rotatable Bond Count68ChemAxon
Refractivity455.32 m³·mol⁻¹ChemAxon
Polarizability209.29 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound163104130
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General ReferencesNot Available