NP-MRD: Showing NP-Card for Pygmaeoherin (NP0063248)

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Record Information

Version

1.0

Created at

2022-04-28 07:42:11 UTC

Updated at

2022-04-28 07:42:12 UTC

NP-MRD ID

NP0063248

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Pygmaeoherin

Description

3,3,4-Trimethyl-7-(propan-2-yl)-2H,3H,6H-furo[2,3-g]chromene-2,6-dione belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one). Pygmaeoherin is found in Premna herbacea and Pygmaeopremna herbacea . 3,3,4-Trimethyl-7-(propan-2-yl)-2H,3H,6H-furo[2,3-g]chromene-2,6-dione is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
   -1.9207    2.0305   -0.6825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2863    0.7317   -0.2840 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1354   -0.2798    0.1663 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5025   -1.3990    0.6496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1023   -1.5181    0.7012 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7009   -0.5112    0.2611 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1039   -0.5395    0.2526 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7944    0.5277   -0.2608 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2450    0.4380   -0.4568 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0466    0.4617    0.8739 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5062   -1.0436   -0.9497 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0846    1.6057   -0.7488 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8085    2.5575   -1.2077 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7930    1.6288   -0.7326 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1040    0.6209   -0.2523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4573   -2.3416    1.0326 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7288   -1.8478    0.7968 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7947   -2.5091    1.0618 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5701   -0.5056    0.2358 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3552    0.4894    1.0975 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1172   -0.5359   -1.1694 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0613    2.7955   -0.7513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5574    2.4125    0.1501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3771    2.0118   -1.6745 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3843   -2.4400    1.0796 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5290   -1.4402    0.6696 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7060    1.0854   -1.1842 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4985    0.1282    1.7299 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9572   -0.1338    0.7157 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4245    1.5321    0.9512 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5928   -1.1160   -1.2081 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8694   -1.3468   -1.7696 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3395   -1.7471   -0.0576 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3549   -0.0466    1.2861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6199    1.3717    0.5404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8355    0.6076    2.0424 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1436   -0.9592   -1.1272 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4657   -1.2257   -1.7268 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1023    0.4498   -1.6490 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0
  9 11  1  0
  9  8  1  0
  8  7  2  0
  7  6  1  0
  6  5  2  0
  5  4  1  0
  4  3  2  0
  3  2  1  0
  2  1  1  0
  2 15  2  0
 15 14  1  0
 14 12  1  0
 12 13  2  0
  3 19  1  0
 19 20  1  0
 19 21  1  0
 19 17  1  0
 17 18  2  0
 17 16  1  0
 12  8  1  0
 15  6  1  0
 16  4  1  0
 10 28  1  0
 10 29  1  0
 10 30  1  0
  9 27  1  0
 11 31  1  0
 11 32  1  0
 11 33  1  0
  7 26  1  0
  5 25  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
 20 34  1  0
 20 35  1  0
 20 36  1  0
 21 37  1  0
 21 38  1  0
 21 39  1  0
M  END


  Mrv1533004171500432D          

 21 23  0  0  0  0            999 V2000
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -0.1576    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8419   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6669   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -1.4924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0714   -1.9049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0214   -2.2461    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 12 15  1  0  0  0  0
  8 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
  6 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
  4 20  1  0  0  0  0
 20 21  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0063248

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C1=CC2=CC3=C(C(C)=C2OC1=O)C(C)(C)C(=O)O3

> <INCHI_IDENTIFIER>
InChI=1S/C17H18O4/c1-8(2)11-6-10-7-12-13(17(4,5)16(19)20-12)9(3)14(10)21-15(11)18/h6-8H,1-5H3

> <INCHI_KEY>
HEAPPLXLLOPCEM-UHFFFAOYSA-N

> <FORMULA>
C17H18O4

> <MOLECULAR_WEIGHT>
286.327

> <EXACT_MASS>
286.12050906

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
31.04142439616664

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3,3,4-trimethyl-7-(propan-2-yl)-2H,3H,6H-furo[2,3-g]chromene-2,6-dione

> <ALOGPS_LOGP>
4.00

> <JCHEM_LOGP>
3.9912748136666667

> <ALOGPS_LOGS>
-4.69

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-6.832703400960891

> <JCHEM_POLAR_SURFACE_AREA>
52.6

> <JCHEM_REFRACTIVITY>
78.9683

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.78e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
7-isopropyl-3,3,4-trimethylfuro[2,3-g]chromene-2,6-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       8.133  -0.294   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       9.038  -1.540   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      10.578  -1.540   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       8.133  -2.786   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.467  -3.556   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.507  -4.193   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   20                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   18                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   15                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   12    8   16                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16    6   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19    4   21                                                  
CONECT   21   20                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   46    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₁₈O₄

Average Mass

286.3270 Da

Monoisotopic Mass

286.12051 Da

IUPAC Name

3,3,4-trimethyl-7-(propan-2-yl)-2H,3H,6H-furo[2,3-g]chromene-2,6-dione

Traditional Name

7-isopropyl-3,3,4-trimethylfuro[2,3-g]chromene-2,6-dione

CAS Registry Number

Not Available

SMILES

CC(C)C1=CC2=CC3=C(C(C)=C2OC1=O)C(C)(C)C(=O)O3

InChI Identifier

InChI=1S/C17H18O4/c1-8(2)11-6-10-7-12-13(17(4,5)16(19)20-12)9(3)14(10)21-15(11)18/h6-8H,1-5H3

InChI Key

HEAPPLXLLOPCEM-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Premna herbacea	LOTUS Database	35616633
Pygmaeopremna herbacea	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one).

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Coumarins and derivatives

Sub Class

Not Available

Direct Parent

Coumarins and derivatives

Alternative Parents

Substituents

Coumarin
Benzopyran
1-benzopyran
Benzofuran
Coumaran
Pyranone
Pyran
Benzenoid
Heteroaromatic compound
Carboxylic acid ester
Lactone
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Organooxygen compound
Organic oxygen compound
Hydrocarbon derivative
Carbonyl group
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4	ALOGPS
logP	3.99	ChemAxon
logS	-4.7	ALOGPS
pKa (Strongest Basic)	-6.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	52.6 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	78.97 m³·mol⁻¹	ChemAxon
Polarizability	31.04 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Pygmaeoherin (NP0063248)

MOL for NP0063248 (Pygmaeoherin)

3D MOL for NP0063248 (Pygmaeoherin)

3D SDF for NP0063248 (Pygmaeoherin)

3D-SDF for NP0063248 (Pygmaeoherin)

PDB for NP0063248 (Pygmaeoherin)

3D PDB for NP0063248 (Pygmaeoherin)

SMILES for NP0063248 (Pygmaeoherin)

INCHI for NP0063248 (Pygmaeoherin)

Structure for NP0063248 (Pygmaeoherin)

3D Structure for NP0063248 (Pygmaeoherin)