NP-MRD: Showing NP-Card for Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside (NP0057853)

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Record Information

Version

1.0

Created at

2022-04-28 03:13:20 UTC

Updated at

2022-04-28 03:13:20 UTC

NP-MRD ID

NP0057853

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside

Description

3-{[(2S,3R,4R,5S,6R)-6-({[(2R,3S,4S,5R,6S)-5-{[(2E)-3-(4-{[(2S,3R,4S,5S,6R)-6-({[3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}phenyl)prop-2-enoyl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-7-hydroxy-2-(4-hydroxy-3,5-dimethoxyphenyl)-5-{[(2S,3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1λ⁴-chromen-1-ylium belongs to the class of organic compounds known as anthocyanidin-5-o-glycosides. These are phenolic compounds containing one anthocyanidin moiety which is O-glycosidically linked to a carbohydrate moiety at the C5-position. Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside is found in Petunia guarapuavensis, Petunia hybrid cultivar and Petunia hybrida cultivar. Based on a literature review very few articles have been published on 3-{[(2S,3R,4R,5S,6R)-6-({[(2R,3S,4S,5R,6S)-5-{[(2E)-3-(4-{[(2S,3R,4S,5S,6R)-6-({[3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}phenyl)prop-2-enoyl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-7-hydroxy-2-(4-hydroxy-3,5-dimethoxyphenyl)-5-{[(2S,3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1λ⁴-chromen-1-ylium.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282205132D          

 90 98  0  0  1  0            999 V2000
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  2 11  1  0  0  0  0
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M  CHG  1   8   1
M  END

     RDKit          3D

157165  0  0  0  0  0  0  0  0999 V2000
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M  CHG  1   7   1
M  END


  Mrv1652304282205132D          

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   11.4315   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1460   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8605   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8605   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.5749   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5749   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2894   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2894    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0039    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7184    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7184   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0039   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4328    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.0039    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  3  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
  2 11  1  0  0  0  0
 10 12  1  0  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 13 18  1  0  0  0  0
 17 19  1  6  0  0  0
 19 20  1  0  0  0  0
 21 20  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 21 26  1  0  0  0  0
 25 27  1  6  0  0  0
 24 28  1  1  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 36 37  1  0  0  0  0
 37 38  2  0  0  0  0
 33 38  1  0  0  0  0
 36 39  1  0  0  0  0
 40 39  1  1  0  0  0
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 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 40 45  1  0  0  0  0
 44 46  1  1  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  2  0  0  0  0
 48 50  1  0  0  0  0
 50 51  2  0  0  0  0
 51 52  1  0  0  0  0
 52 53  2  0  0  0  0
 53 54  1  0  0  0  0
 54 55  2  0  0  0  0
 55 56  1  0  0  0  0
 56 57  2  0  0  0  0
 52 57  1  0  0  0  0
 55 58  1  0  0  0  0
 54 59  1  0  0  0  0
 43 60  1  6  0  0  0
 42 61  1  1  0  0  0
 41 62  1  6  0  0  0
 23 63  1  6  0  0  0
 22 64  1  1  0  0  0
 16 65  1  1  0  0  0
 15 66  1  1  0  0  0
 14 67  1  1  0  0  0
  9 68  1  0  0  0  0
 68 69  2  0  0  0  0
 69 70  1  0  0  0  0
 70 71  2  0  0  0  0
 71 72  1  0  0  0  0
 72 73  2  0  0  0  0
 68 73  1  0  0  0  0
 72 74  1  0  0  0  0
 74 75  1  0  0  0  0
 71 76  1  0  0  0  0
 70 77  1  0  0  0  0
 77 78  1  0  0  0  0
  1 79  1  0  0  0  0
 80 79  1  1  0  0  0
 80 81  1  0  0  0  0
 81 82  1  0  0  0  0
 82 83  1  0  0  0  0
 83 84  1  0  0  0  0
 84 85  1  0  0  0  0
 80 85  1  0  0  0  0
 84 86  1  1  0  0  0
 86 87  1  0  0  0  0
 83 88  1  6  0  0  0
 82 89  1  1  0  0  0
 81 90  1  1  0  0  0
M  CHG  1   8   1
M  END
> <DATABASE_ID>
NP0057853

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(=CC(OC)=C1O)C1=[O+]C2=CC(O)=CC(O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]3O)=C2C=C1O[C@@H]1O[C@H](CO[C@@H]2O[C@@H](C)[C@H](OC(=O)\C=C\C3=CC=C(O[C@@H]4O[C@H](COC(=O)\C=C\C5=CC(O)=C(O)C=C5)[C@@H](O)[C@H](O)[C@H]4O)C=C3)[C@@H](O)[C@@H]2O)[C@@H](O)[C@@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C59H66O31/c1-23-54(90-41(65)13-7-24-4-9-28(10-5-24)83-57-50(74)47(71)44(68)38(88-57)21-80-40(64)12-8-25-6-11-30(62)31(63)14-25)49(73)53(77)56(82-23)81-22-39-45(69)48(72)52(76)59(89-39)86-36-19-29-32(84-55(36)26-15-34(78-2)42(66)35(16-26)79-3)17-27(61)18-33(29)85-58-51(75)46(70)43(67)37(20-60)87-58/h4-19,23,37-39,43-54,56-60,67-77H,20-22H2,1-3H3,(H3-,61,62,63,64,66)/p+1/b13-7+/t23-,37+,38+,39+,43+,44+,45+,46-,47-,48+,49-,50+,51-,52+,53-,54-,56+,57+,58+,59+/m0/s1

> <INCHI_KEY>
NSQMDSRNPIHQIW-BUQBWVRISA-O

> <FORMULA>
C59H67O31

> <MOLECULAR_WEIGHT>
1272.153

> <EXACT_MASS>
1271.366081798

> <JCHEM_ACCEPTOR_COUNT>
29

> <JCHEM_ATOM_COUNT>
157

> <JCHEM_AVERAGE_POLARIZABILITY>
124.01855749444874

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
16

> <JCHEM_FORMAL_CHARGE>
1

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-{[(2S,3R,4R,5S,6R)-6-({[(2R,3S,4S,5R,6S)-5-{[(2E)-3-(4-{[(2S,3R,4S,5S,6R)-6-({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}phenyl)prop-2-enoyl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-7-hydroxy-2-(4-hydroxy-3,5-dimethoxyphenyl)-5-{[(2S,3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1lambda4-chromen-1-ylium

> <ALOGPS_LOGP>
2.09

> <JCHEM_LOGP>
0.3513000000000006

> <ALOGPS_LOGS>
-4.01

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
9

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
7.856945557044229

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.640921853394931

> <JCHEM_PKA_STRONGEST_BASIC>
-3.9479275433045986

> <JCHEM_POLAR_SURFACE_AREA>
481.72000000000025

> <JCHEM_REFRACTIVITY>
307.4394999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
22

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.29e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-{[(2S,3R,4R,5S,6R)-6-({[(2R,3S,4S,5R,6S)-5-{[(2E)-3-(4-{[(2S,3R,4S,5S,6R)-6-({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}phenyl)prop-2-enoyl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-7-hydroxy-2-(4-hydroxy-3,5-dimethoxyphenyl)-5-{[(2S,3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1lambda4-chromen-1-ylium

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -2.667  -0.000   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       2.667  -0.000   0.000  0.00  0.00           O+1
HETATM    9  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       6.668  -5.390   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       8.002  -9.240   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       9.336 -10.010   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      10.669  -9.240   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      12.003 -10.010   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      12.003 -11.550   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      10.669 -12.320   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       9.336 -11.550   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      10.669 -13.860   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      13.337 -12.320   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      14.670 -11.550   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      16.004 -12.320   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      14.670 -10.010   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      16.004  -9.240   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      16.004  -7.700   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      14.670  -6.930   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      14.670  -5.390   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      16.004  -4.620   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      17.338  -5.390   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      17.338  -6.930   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      16.004  -3.080   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      17.338  -2.310   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      17.338  -0.770   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      18.672  -0.000   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      20.005  -0.770   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      20.005  -2.310   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      18.672  -3.080   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      21.339  -3.080   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      22.673  -2.310   0.000  0.00  0.00           O+0
HETATM   48  C   UNK     0      24.006  -3.080   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0      24.006  -4.620   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0      25.340  -2.310   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      25.340  -0.770   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      26.674  -0.000   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      26.674   1.540   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      28.007   2.310   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      29.341   1.540   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      29.341  -0.000   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      28.007  -0.770   0.000  0.00  0.00           C+0
HETATM   58  O   UNK     0      30.675   2.310   0.000  0.00  0.00           O+0
HETATM   59  O   UNK     0      28.007   3.850   0.000  0.00  0.00           O+0
HETATM   60  O   UNK     0      21.339  -0.000   0.000  0.00  0.00           O+0
HETATM   61  O   UNK     0      18.672   1.540   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0      16.004  -0.000   0.000  0.00  0.00           O+0
HETATM   63  O   UNK     0      13.337  -9.240   0.000  0.00  0.00           O+0
HETATM   64  O   UNK     0      10.669  -7.700   0.000  0.00  0.00           O+0
HETATM   65  O   UNK     0       5.335  -9.240   0.000  0.00  0.00           O+0
HETATM   66  O   UNK     0       2.667  -7.700   0.000  0.00  0.00           O+0
HETATM   67  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   68  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   70  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   71  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   72  C   UNK     0       8.002  -0.000   0.000  0.00  0.00           C+0
HETATM   73  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   74  O   UNK     0       9.336  -0.770   0.000  0.00  0.00           O+0
HETATM   75  C   UNK     0      10.669  -0.000   0.000  0.00  0.00           C+0
HETATM   76  O   UNK     0       9.336   2.310   0.000  0.00  0.00           O+0
HETATM   77  O   UNK     0       6.668   3.850   0.000  0.00  0.00           O+0
HETATM   78  C   UNK     0       8.002   4.620   0.000  0.00  0.00           C+0
HETATM   79  O   UNK     0      -0.000  -4.620   0.000  0.00  0.00           O+0
HETATM   80  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   81  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   82  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   83  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   84  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   85  O   UNK     0      -2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   86  C   UNK     0      -5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   87  O   UNK     0      -6.668  -5.390   0.000  0.00  0.00           O+0
HETATM   88  O   UNK     0      -5.335  -7.700   0.000  0.00  0.00           O+0
HETATM   89  O   UNK     0      -2.667  -9.240   0.000  0.00  0.00           O+0
HETATM   90  O   UNK     0      -0.000  -7.700   0.000  0.00  0.00           O+0
CONECT    1    2    6   79                                                  
CONECT    2    1    3   11                                                  
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5                                                            
CONECT    8    3    9                                                       
CONECT    9    8   10   68                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10    2                                                       
CONECT   12   10   13                                                       
CONECT   13   12   14   18                                                  
CONECT   14   13   15   67                                                  
CONECT   15   14   16   66                                                  
CONECT   16   15   17   65                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17   13                                                       
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   26                                                  
CONECT   22   21   23   64                                                  
CONECT   23   22   24   63                                                  
CONECT   24   23   25   28                                                  
CONECT   25   24   26   27                                                  
CONECT   26   25   21                                                       
CONECT   27   25                                                            
CONECT   28   24   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34   38                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37   39                                                  
CONECT   37   36   38                                                       
CONECT   38   37   33                                                       
CONECT   39   36   40                                                       
CONECT   40   39   41   45                                                  
CONECT   41   40   42   62                                                  
CONECT   42   41   43   61                                                  
CONECT   43   42   44   60                                                  
CONECT   44   43   45   46                                                  
CONECT   45   44   40                                                       
CONECT   46   44   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49   50                                                  
CONECT   49   48                                                            
CONECT   50   48   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53   57                                                  
CONECT   53   52   54                                                       
CONECT   54   53   55   59                                                  
CONECT   55   54   56   58                                                  
CONECT   56   55   57                                                       
CONECT   57   56   52                                                       
CONECT   58   55                                                            
CONECT   59   54                                                            
CONECT   60   43                                                            
CONECT   61   42                                                            
CONECT   62   41                                                            
CONECT   63   23                                                            
CONECT   64   22                                                            
CONECT   65   16                                                            
CONECT   66   15                                                            
CONECT   67   14                                                            
CONECT   68    9   69   73                                                  
CONECT   69   68   70                                                       
CONECT   70   69   71   77                                                  
CONECT   71   70   72   76                                                  
CONECT   72   71   73   74                                                  
CONECT   73   72   68                                                       
CONECT   74   72   75                                                       
CONECT   75   74                                                            
CONECT   76   71                                                            
CONECT   77   70   78                                                       
CONECT   78   77                                                            
CONECT   79    1   80                                                       
CONECT   80   79   81   85                                                  
CONECT   81   80   82   90                                                  
CONECT   82   81   83   89                                                  
CONECT   83   82   84   88                                                  
CONECT   84   83   85   86                                                  
CONECT   85   84   80                                                       
CONECT   86   84   87                                                       
CONECT   87   86                                                            
CONECT   88   83                                                            
CONECT   89   82                                                            
CONECT   90   81                                                            
MASTER        0    0    0    0    0    0    0    0   90    0  196    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₅₉H₆₇O₃₁

Average Mass

1272.1530 Da

Monoisotopic Mass

1271.36608 Da

IUPAC Name

3-{[(2S,3R,4R,5S,6R)-6-({[(2R,3S,4S,5R,6S)-5-{[(2E)-3-(4-{[(2S,3R,4S,5S,6R)-6-({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}phenyl)prop-2-enoyl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-7-hydroxy-2-(4-hydroxy-3,5-dimethoxyphenyl)-5-{[(2S,3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1lambda4-chromen-1-ylium

Traditional Name

CAS Registry Number

Not Available

SMILES

COC1=CC(=CC(OC)=C1O)C1=[O+]C2=CC(O)=CC(O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]3O)=C2C=C1O[C@@H]1O[C@H](CO[C@@H]2O[C@@H](C)[C@H](OC(=O)\C=C\C3=CC=C(O[C@@H]4O[C@H](COC(=O)\C=C\C5=CC(O)=C(O)C=C5)[C@@H](O)[C@H](O)[C@H]4O)C=C3)[C@@H](O)[C@@H]2O)[C@@H](O)[C@@H](O)[C@H]1O

InChI Identifier

InChI=1S/C59H66O31/c1-23-54(90-41(65)13-7-24-4-9-28(10-5-24)83-57-50(74)47(71)44(68)38(88-57)21-80-40(64)12-8-25-6-11-30(62)31(63)14-25)49(73)53(77)56(82-23)81-22-39-45(69)48(72)52(76)59(89-39)86-36-19-29-32(84-55(36)26-15-34(78-2)42(66)35(16-26)79-3)17-27(61)18-33(29)85-58-51(75)46(70)43(67)37(20-60)87-58/h4-19,23,37-39,43-54,56-60,67-77H,20-22H2,1-3H3,(H3-,61,62,63,64,66)/p+1/b13-7+/t23-,37+,38+,39+,43+,44+,45+,46-,47-,48+,49-,50+,51-,52+,53-,54-,56+,57+,58+,59+/m0/s1

InChI Key

NSQMDSRNPIHQIW-BUQBWVRISA-O

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Petunia guarapuavensis	Plant	KNApSAcK
Petunia hybrid cultivar	LOTUS Database	35616633
Petunia hybrida cultivar	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as anthocyanidin-5-o-glycosides. These are phenolic compounds containing one anthocyanidin moiety which is O-glycosidically linked to a carbohydrate moiety at the C5-position.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Flavonoids

Sub Class

Flavonoid glycosides

Direct Parent

Anthocyanidin-5-O-glycosides

Alternative Parents

Substituents

Anthocyanidin-5-o-glycoside
Anthocyanidin-3-o-glycoside
Flavonoid-3-o-glycoside
3p-methoxyflavonoid-skeleton
Hydroxyflavonoid
7-hydroxyflavonoid
4'-hydroxyflavonoid
Anthocyanidin
Phenolic glycoside
Cinnamic acid ester
Hydroxycinnamic acid or derivatives
Coumaric acid or derivatives
Cinnamic acid or derivatives
O-glycosyl compound
Glycosyl compound
Disaccharide
M-dimethoxybenzene
Dimethoxybenzene
1-benzopyran
Methoxyphenol
Benzopyran
Phenoxy compound
Methoxybenzene
Styrene
Phenol ether
Catechol
Anisole
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Fatty acid ester
Alkyl aryl ether
Fatty acyl
Benzenoid
Oxane
Dicarboxylic acid or derivatives
Monocyclic benzene moiety
Heteroaromatic compound
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Ether
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Organic cation
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.09	ALOGPS
logP	0.35	ChemAxon
logS	-4	ALOGPS
pKa (Strongest Acidic)	6.64	ChemAxon
pKa (Strongest Basic)	-3.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	29	ChemAxon
Hydrogen Donor Count	16	ChemAxon
Polar Surface Area	481.72 Å²	ChemAxon
Rotatable Bond Count	22	ChemAxon
Refractivity	307.44 m³·mol⁻¹	ChemAxon
Polarizability	124.02 Å³	ChemAxon
Number of Rings	9	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163192204

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside (NP0057853)

MOL for NP0057853 (Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside)

3D MOL for NP0057853 (Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside)

3D SDF for NP0057853 (Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside)

3D-SDF for NP0057853 (Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside)

PDB for NP0057853 (Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside)

3D PDB for NP0057853 (Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside)

SMILES for NP0057853 (Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside)

INCHI for NP0057853 (Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside)

Structure for NP0057853 (Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside)

3D Structure for NP0057853 (Malvidin 3-O-[6-O-[4-O-[4-O-(6-O-caffeoyl-beta-D-glucopyranosyl)-p-coumaroyl]-alpha-L-rhamnosyl]-beta-D-glucopyranoside]-5-O-beta-D-glucopyranoside)