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Showing NP-Card for (+)-(3S,4S)-cis-3-[(1Z)-Butenyl]-4-vinylcyclopentene (NP0050235)

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Record Information
Version1.0
Created at2022-04-27 20:49:18 UTC
Updated at2022-04-27 20:49:18 UTC
NP-MRD IDNP0050235
Secondary Accession NumbersNone
Natural Product Identification
Common Name(+)-(3S,4S)-cis-3-[(1Z)-Butenyl]-4-vinylcyclopentene
Description(3S,4R)-3-[(1Z)-but-1-en-1-yl]-4-ethenylcyclopent-1-ene belongs to the class of organic compounds known as cycloalkenes. These are unsaturated monocyclic hydrocarbons having one endocyclic double bond. (+)-(3S,4S)-cis-3-[(1Z)-Butenyl]-4-vinylcyclopentene is found in Chorda tomentosa and Cutleria multifida. Based on a literature review very few articles have been published on (3S,4R)-3-[(1Z)-but-1-en-1-yl]-4-ethenylcyclopent-1-ene.
Structure
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MOLSDFPDBSMILESInChI

MOL for NP0050235 ((+)-(3S,4S)-cis-3-[(1Z)-Butenyl]-4-vinylcyclopentene)


  Mrv1652304272222492D          

 11 11  0  0  1  0            999 V2000
    0.9803   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.9393    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2822    2.3518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8843    0.8843    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4974    0.3323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3259   -0.4747    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5412   -0.7296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  4  6  1  1  0  0  0
  6  7  2  0  0  0  0
  3  8  1  6  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
M  END
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3D MOL for NP0050235 ((+)-(3S,4S)-cis-3-[(1Z)-Butenyl]-4-vinylcyclopentene)

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3D SDF for NP0050235 ((+)-(3S,4S)-cis-3-[(1Z)-Butenyl]-4-vinylcyclopentene)

  Mrv1652304272222492D          

 11 11  0  0  1  0            999 V2000
    0.9803   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.9393    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2822    2.3518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8843    0.8843    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4974    0.3323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3259   -0.4747    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5412   -0.7296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  4  6  1  1  0  0  0
  6  7  2  0  0  0  0
  3  8  1  6  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0050235

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC\C=C/[C@H]1C=CC[C@@H]1C=C

> <INCHI_IDENTIFIER>
InChI=1S/C11H16/c1-3-5-7-11-9-6-8-10(11)4-2/h4-7,9-11H,2-3,8H2,1H3/b7-5-/t10-,11-/m0/s1

> <INCHI_KEY>
BEUUCPGMRTUNSM-MGVUPCTHSA-N

> <FORMULA>
C11H16

> <MOLECULAR_WEIGHT>
148.249

> <EXACT_MASS>
148.125200515

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
27

> <JCHEM_AVERAGE_POLARIZABILITY>
18.411267416336493

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,4R)-3-[(1Z)-but-1-en-1-yl]-4-ethenylcyclopent-1-ene

> <ALOGPS_LOGP>
4.31

> <JCHEM_LOGP>
3.547324878

> <ALOGPS_LOGS>
-4.13

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
52.783500000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.11e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,4R)-3-[(1Z)-but-1-en-1-yl]-4-ethenylcyclopent-1-ene

> <JCHEM_VEBER_RULE>
1

$$$$

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3D-SDF for NP0050235 ((+)-(3S,4S)-cis-3-[(1Z)-Butenyl]-4-vinylcyclopentene)
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PDB for NP0050235 ((+)-(3S,4S)-cis-3-[(1Z)-Butenyl]-4-vinylcyclopentene)
HEADER    PROTEIN                                 27-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-APR-22         0                                  
HETATM    1  C   UNK     0       1.830  -0.290   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.186   1.175   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.306   1.175   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.060   3.620   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.393   4.390   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.651   1.651   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.795   0.620   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.475  -0.886   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.010  -1.362   0.000  0.00  0.00           C+0
CONECT    1    2    5                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4    1                                                       
CONECT    6    4    7                                                       
CONECT    7    6                                                            
CONECT    8    3    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   22    0
END

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3D PDB for NP0050235 ((+)-(3S,4S)-cis-3-[(1Z)-Butenyl]-4-vinylcyclopentene)
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SMILES for NP0050235 ((+)-(3S,4S)-cis-3-[(1Z)-Butenyl]-4-vinylcyclopentene)
CC\C=C/[C@H]1C=CC[C@@H]1C=C
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INCHI for NP0050235 ((+)-(3S,4S)-cis-3-[(1Z)-Butenyl]-4-vinylcyclopentene)
InChI=1S/C11H16/c1-3-5-7-11-9-6-8-10(11)4-2/h4-7,9-11H,2-3,8H2,1H3/b7-5-/t10-,11-/m0/s1
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View in JSmol
SynonymsNot Available
Chemical FormulaC11H16
Average Mass148.2490 Da
Monoisotopic Mass148.12520 Da
IUPAC Name(3S,4R)-3-[(1Z)-but-1-en-1-yl]-4-ethenylcyclopent-1-ene
Traditional Name(3S,4R)-3-[(1Z)-but-1-en-1-yl]-4-ethenylcyclopent-1-ene
CAS Registry NumberNot Available
SMILES
CC\C=C/[C@H]1C=CC[C@@H]1C=C
InChI Identifier
InChI=1S/C11H16/c1-3-5-7-11-9-6-8-10(11)4-2/h4-7,9-11H,2-3,8H2,1H3/b7-5-/t10-,11-/m0/s1
InChI KeyBEUUCPGMRTUNSM-MGVUPCTHSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Chorda tomentosaChromalveolata
Cutleria multifida-
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cycloalkenes. These are unsaturated monocyclic hydrocarbons having one endocyclic double bond.
KingdomOrganic compounds  
Super ClassHydrocarbons  
ClassUnsaturated hydrocarbons  
Sub ClassOlefins  
Direct ParentCycloalkenes  
Alternative Parents
Substituents
  • Cycloalkene
    • 

  • Unsaturated aliphatic hydrocarbon
    • 

  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.31ALOGPS
logP3.55ChemAxon
logS-4.1ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity52.78 m³·mol⁻¹ChemAxon
Polarizability18.41 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound163015062  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General ReferencesNot Available