NP-MRD: Showing NP-Card for (+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+ (NP0036337)

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Record Information

Version

1.0

Created at

2021-06-20 19:32:11 UTC

Updated at

2021-06-30 00:07:56 UTC

NP-MRD ID

NP0036337

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+

Provided By

JEOL Database JEOL Logo

Description

(4S,5E,7S,10R,13R)-4-Isopropyl-4,7,10-trihydroxy-7-methyl-11-methylene-14-oxabicyclo[11.2.1]Hexadecane-1(16),5-diene-15-one belongs to the class of organic compounds known as terpene lactones. (+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+ is found in Croton gratissimus. It was first documented in 2011 (Langat, M. K., et al.). These are prenol lipids containing a lactone ring (4S,5E,7S,10R,13R)-4-Isopropyl-4,7,10-trihydroxy-7-methyl-11-methylene-14-oxabicyclo[11.2.1]Hexadecane-1(16),5-diene-15-one is a strongly basic compound (based on its pKa).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306202121323D          

 55 56  0  0  0  0            999 V2000
    3.9458    0.7499    2.9429 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6217    0.8069    1.6361 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.8712   -1.2219   -0.0035 C   0  0  2  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

 55 56  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306202121323D          

 55 56  0  0  0  0            999 V2000
    3.9458    0.7499    2.9429 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6217    0.8069    1.6361 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.8712   -1.2219   -0.0035 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.9556   -2.7479   -0.0591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6680   -1.9792   -1.4602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2609   -1.5106    1.6250 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8493    0.2677    1.3198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7645   -1.4178   -1.0609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5939    0.3485   -1.0739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7570   -0.4215    0.0015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3253   -1.8859    2.4204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9768   -2.7609    1.0195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0277   -1.7311    1.9933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9281    0.5580   -1.6846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5019    2.6606   -0.9832 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7372    4.4056    0.4065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8439    3.1218    0.9431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0131    4.1006    2.1353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5942    0.8625    2.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9217    3.9451    0.6462 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3500    4.1030    2.2921 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3588    1.9270    2.9282 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4555    3.2338    2.4989 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7443    0.9324    0.6297 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6260    3.0383    0.4486 H   0  0  0  0  0  0  0  0  0  0  0  0
 19 20  1  0  0  0  0
 11 12  1  0  0  0  0
 20 21  1  0  0  0  0
  7  8  1  0  0  0  0
 21  2  1  0  0  0  0
 11 13  1  0  0  0  0
  2  1  2  3  0  0  0
  9 14  1  0  0  0  0
  2  3  1  0  0  0  0
 15 16  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
 14 15  2  0  0  0  0
  6 23  1  0  0  0  0
 16 19  1  0  0  0  0
  4 25  1  0  0  0  0
 25 23  1  0  0  0  0
 23 24  2  0  0  0  0
  7  6  1  0  0  0  0
 16 18  1  1  0  0  0
  9 11  1  0  0  0  0
 16 17  1  0  0  0  0
  6  5  2  0  0  0  0
  9 10  1  1  0  0  0
  8  9  1  0  0  0  0
 21 22  1  0  0  0  0
 15 45  1  0  0  0  0
  7 32  1  0  0  0  0
  7 33  1  0  0  0  0
  8 34  1  0  0  0  0
  8 35  1  0  0  0  0
 14 44  1  0  0  0  0
 11 37  1  1  0  0  0
 12 38  1  0  0  0  0
 12 39  1  0  0  0  0
 12 40  1  0  0  0  0
 13 41  1  0  0  0  0
 13 42  1  0  0  0  0
 13 43  1  0  0  0  0
 19 50  1  0  0  0  0
 19 51  1  0  0  0  0
  5 31  1  0  0  0  0
 20 52  1  0  0  0  0
 20 53  1  0  0  0  0
 21 54  1  6  0  0  0
  1 26  1  0  0  0  0
  1 27  1  0  0  0  0
  3 28  1  0  0  0  0
  3 29  1  0  0  0  0
  4 30  1  6  0  0  0
 18 49  1  0  0  0  0
 17 46  1  0  0  0  0
 17 47  1  0  0  0  0
 17 48  1  0  0  0  0
 10 36  1  0  0  0  0
 22 55  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0036337

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1([H])C(=C([H])[H])C([H])([H])[C@@]2([H])OC(=O)C(=C2[H])C([H])([H])C([H])([H])[C@@](O[H])(\C([H])=C([H])/[C@](O[H])(C([H])([H])[H])C([H])([H])C1([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H30O5/c1-13(2)20(24)8-5-15-12-16(25-18(15)22)11-14(3)17(21)6-7-19(4,23)9-10-20/h9-10,12-13,16-17,21,23-24H,3,5-8,11H2,1-2,4H3/b10-9-/t16-,17-,19+,20-/m1/s1

> <INCHI_KEY>
LOIIZBXZZSSECJ-GZHUPFJTSA-N

> <FORMULA>
C20H30O5

> <MOLECULAR_WEIGHT>
350.455

> <EXACT_MASS>
350.209324066

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
37.76895733010477

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4S,5Z,7S,10R,13R)-4,7,10-trihydroxy-7-methyl-11-methylidene-4-(propan-2-yl)-14-oxabicyclo[11.2.1]hexadeca-1(16),5-dien-15-one

> <ALOGPS_LOGP>
2.19

> <JCHEM_LOGP>
2.2977539006666676

> <ALOGPS_LOGS>
-2.82

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.059764921375454

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.409025557439367

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9409974308676547

> <JCHEM_POLAR_SURFACE_AREA>
86.99

> <JCHEM_REFRACTIVITY>
97.81429999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.36e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4S,5Z,7S,10R,13R)-4,7,10-trihydroxy-4-isopropyl-7-methyl-11-methylidene-14-oxabicyclo[11.2.1]hexadeca-1(16),5-dien-15-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 55 56  0  0  0  0  0  0  0  0999 V2000
    3.9458    0.7499    2.9429 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6217    0.8069    1.6361 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4781    0.0372    0.6361 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8712   -1.2219   -0.0035 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7892   -1.0199   -0.9887 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7104   -1.7331   -0.6665 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4523   -1.9069   -1.4355 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8960   -1.8537   -0.6914 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2207   -0.5958    0.1653 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3485   -0.5888    1.3053 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7023   -0.6122    0.6812 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.7555   -0.5227   -0.4321 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0182   -1.8198    1.5762 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9305    0.6816   -0.6012 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7018    1.9431   -0.1833 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7314    2.6103    1.1797 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8906    3.6215    1.1564 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0247    1.7163    2.2408 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5787    3.3635    1.5110 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7300    2.5196    2.0844 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4606    1.6196    1.0766 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9804    2.4423    0.0306 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0152   -2.3817    0.6142 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2335   -3.0608    1.2579 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2949   -2.0897    0.9762 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7831    0.1533    3.2954 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3880    1.2695    3.7147 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3947   -0.2864    1.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8248    0.7191   -0.1505 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6835   -1.7753   -0.4920 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8956   -0.4186   -1.8804 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5069   -2.8891   -1.9252 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4313   -1.1832   -2.2600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9556   -2.7479   -0.0591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6680   -1.9792   -1.4602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2609   -1.5106    1.6250 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8493    0.2677    1.3198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7645   -1.4178   -1.0609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5939    0.3485   -1.0739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7570   -0.4215    0.0015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3253   -1.8859    2.4204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9768   -2.7609    1.0195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0277   -1.7311    1.9933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9281    0.5580   -1.6846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5019    2.6606   -0.9832 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7372    4.4056    0.4065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8439    3.1218    0.9431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0131    4.1006    2.1353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5942    0.8625    2.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9217    3.9451    0.6462 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3500    4.1030    2.2921 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3588    1.9270    2.9282 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4555    3.2338    2.4989 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7443    0.9324    0.6297 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6260    3.0383    0.4486 H   0  0  0  0  0  0  0  0  0  0  0  0
 19 20  1  0
 11 12  1  0
 20 21  1  0
  7  8  1  0
 21  2  1  0
 11 13  1  0
  2  1  2  3
  9 14  1  0
  2  3  1  0
 15 16  1  0
  3  4  1  0
  4  5  1  0
 14 15  2  0
  6 23  1  0
 16 19  1  0
  4 25  1  0
 25 23  1  0
 23 24  2  0
  7  6  1  0
 16 18  1  1
  9 11  1  0
 16 17  1  0
  6  5  2  0
  9 10  1  1
  8  9  1  0
 21 22  1  0
 15 45  1  0
  7 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
 14 44  1  0
 11 37  1  1
 12 38  1  0
 12 39  1  0
 12 40  1  0
 13 41  1  0
 13 42  1  0
 13 43  1  0
 19 50  1  0
 19 51  1  0
  5 31  1  0
 20 52  1  0
 20 53  1  0
 21 54  1  6
  1 26  1  0
  1 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  6
 18 49  1  0
 17 46  1  0
 17 47  1  0
 17 48  1  0
 10 36  1  0
 22 55  1  0
M  END

HEADER    PROTEIN                                 20-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUN-21         0                                  
HETATM    1  C   UNK     0       3.946   0.750   2.943  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.622   0.807   1.636  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.478   0.037   0.636  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.871  -1.222  -0.004  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.789  -1.020  -0.989  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.710  -1.733  -0.667  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.452  -1.907  -1.436  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.896  -1.854  -0.691  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.221  -0.596   0.165  0.00  0.00           C+0
HETATM   10  O   UNK     0      -0.349  -0.589   1.305  0.00  0.00           O+0
HETATM   11  C   UNK     0      -2.702  -0.612   0.681  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.756  -0.523  -0.432  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.018  -1.820   1.576  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.931   0.682  -0.601  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.702   1.943  -0.183  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.731   2.610   1.180  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.891   3.622   1.156  0.00  0.00           C+0
HETATM   18  O   UNK     0      -1.025   1.716   2.241  0.00  0.00           O+0
HETATM   19  C   UNK     0       0.579   3.364   1.511  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.730   2.520   2.084  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.461   1.620   1.077  0.00  0.00           C+0
HETATM   22  O   UNK     0       2.980   2.442   0.031  0.00  0.00           O+0
HETATM   23  C   UNK     0       2.015  -2.382   0.614  0.00  0.00           C+0
HETATM   24  O   UNK     0       1.234  -3.061   1.258  0.00  0.00           O+0
HETATM   25  O   UNK     0       3.295  -2.090   0.976  0.00  0.00           O+0
HETATM   26  H   UNK     0       4.783   0.153   3.295  0.00  0.00           H+0
HETATM   27  H   UNK     0       3.388   1.270   3.715  0.00  0.00           H+0
HETATM   28  H   UNK     0       5.395  -0.286   1.150  0.00  0.00           H+0
HETATM   29  H   UNK     0       4.825   0.719  -0.151  0.00  0.00           H+0
HETATM   30  H   UNK     0       4.684  -1.775  -0.492  0.00  0.00           H+0
HETATM   31  H   UNK     0       2.896  -0.419  -1.880  0.00  0.00           H+0
HETATM   32  H   UNK     0       0.507  -2.889  -1.925  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.431  -1.183  -2.260  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.956  -2.748  -0.059  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.668  -1.979  -1.460  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.261  -1.511   1.625  0.00  0.00           H+0
HETATM   37  H   UNK     0      -2.849   0.268   1.320  0.00  0.00           H+0
HETATM   38  H   UNK     0      -3.765  -1.418  -1.061  0.00  0.00           H+0
HETATM   39  H   UNK     0      -3.594   0.349  -1.074  0.00  0.00           H+0
HETATM   40  H   UNK     0      -4.757  -0.422   0.002  0.00  0.00           H+0
HETATM   41  H   UNK     0      -2.325  -1.886   2.420  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.977  -2.761   1.020  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.028  -1.731   1.993  0.00  0.00           H+0
HETATM   44  H   UNK     0      -0.928   0.558  -1.685  0.00  0.00           H+0
HETATM   45  H   UNK     0      -0.502   2.661  -0.983  0.00  0.00           H+0
HETATM   46  H   UNK     0      -1.737   4.406   0.407  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.844   3.122   0.943  0.00  0.00           H+0
HETATM   48  H   UNK     0      -2.013   4.101   2.135  0.00  0.00           H+0
HETATM   49  H   UNK     0      -0.594   0.863   2.023  0.00  0.00           H+0
HETATM   50  H   UNK     0       0.922   3.945   0.646  0.00  0.00           H+0
HETATM   51  H   UNK     0       0.350   4.103   2.292  0.00  0.00           H+0
HETATM   52  H   UNK     0       1.359   1.927   2.928  0.00  0.00           H+0
HETATM   53  H   UNK     0       2.455   3.234   2.499  0.00  0.00           H+0
HETATM   54  H   UNK     0       1.744   0.932   0.630  0.00  0.00           H+0
HETATM   55  H   UNK     0       3.626   3.038   0.449  0.00  0.00           H+0
CONECT    1    2   26   27                                                  
CONECT    2   21    1    3                                                  
CONECT    3    2    4   28   29                                             
CONECT    4    3    5   25   30                                             
CONECT    5    4    6   31                                                  
CONECT    6   23    7    5                                                  
CONECT    7    8    6   32   33                                             
CONECT    8    7    9   34   35                                             
CONECT    9   14   11   10    8                                             
CONECT   10    9   36                                                       
CONECT   11   12   13    9   37                                             
CONECT   12   11   38   39   40                                             
CONECT   13   11   41   42   43                                             
CONECT   14    9   15   44                                                  
CONECT   15   16   14   45                                                  
CONECT   16   15   19   18   17                                             
CONECT   17   16   46   47   48                                             
CONECT   18   16   49                                                       
CONECT   19   20   16   50   51                                             
CONECT   20   19   21   52   53                                             
CONECT   21   20    2   22   54                                             
CONECT   22   21   55                                                       
CONECT   23    6   25   24                                                  
CONECT   24   23                                                            
CONECT   25    4   23                                                       
CONECT   26    1                                                            
CONECT   27    1                                                            
CONECT   28    3                                                            
CONECT   29    3                                                            
CONECT   30    4                                                            
CONECT   31    5                                                            
CONECT   32    7                                                            
CONECT   33    7                                                            
CONECT   34    8                                                            
CONECT   35    8                                                            
CONECT   36   10                                                            
CONECT   37   11                                                            
CONECT   38   12                                                            
CONECT   39   12                                                            
CONECT   40   12                                                            
CONECT   41   13                                                            
CONECT   42   13                                                            
CONECT   43   13                                                            
CONECT   44   14                                                            
CONECT   45   15                                                            
CONECT   46   17                                                            
CONECT   47   17                                                            
CONECT   48   17                                                            
CONECT   49   18                                                            
CONECT   50   19                                                            
CONECT   51   19                                                            
CONECT   52   20                                                            
CONECT   53   20                                                            
CONECT   54   21                                                            
CONECT   55   22                                                            
MASTER        0    0    0    0    0    0    0    0   55    0  112    0
END

RDKit          3D

55 56  0  0  0  0  0  0  0  0999 V2000
    3.9458    0.7499    2.9429 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6217    0.8069    1.6361 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4781    0.0372    0.6361 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8712   -1.2219   -0.0035 C   0  0  2  0  0  0  0  0  0  0  0  0
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    1.7104   -1.7331   -0.6665 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4523   -1.9069   -1.4355 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.7023   -0.6122    0.6812 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -3.0182   -1.8198    1.5762 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4606    1.6196    1.0766 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9804    2.4423    0.0306 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0152   -2.3817    0.6142 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2335   -3.0608    1.2579 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2949   -2.0897    0.9762 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7831    0.1533    3.2954 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3880    1.2695    3.7147 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3947   -0.2864    1.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8248    0.7191   -0.1505 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6835   -1.7753   -0.4920 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8956   -0.4186   -1.8804 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5069   -2.8891   -1.9252 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4313   -1.1832   -2.2600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9556   -2.7479   -0.0591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6680   -1.9792   -1.4602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2609   -1.5106    1.6250 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8493    0.2677    1.3198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7645   -1.4178   -1.0609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5939    0.3485   -1.0739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7570   -0.4215    0.0015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3253   -1.8859    2.4204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9768   -2.7609    1.0195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0277   -1.7311    1.9933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9281    0.5580   -1.6846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5019    2.6606   -0.9832 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7372    4.4056    0.4065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8439    3.1218    0.9431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0131    4.1006    2.1353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5942    0.8625    2.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9217    3.9451    0.6462 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3500    4.1030    2.2921 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3588    1.9270    2.9282 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4555    3.2338    2.4989 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7443    0.9324    0.6297 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6260    3.0383    0.4486 H   0  0  0  0  0  0  0  0  0  0  0  0
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 11 12  1  0
 20 21  1  0
  7  8  1  0
 21  2  1  0
 11 13  1  0
  2  1  2  3
  9 14  1  0
  2  3  1  0
 15 16  1  0
  3  4  1  0
  4  5  1  0
 14 15  2  0
  6 23  1  0
 16 19  1  0
  4 25  1  0
 25 23  1  0
 23 24  2  0
  7  6  1  0
 16 18  1  1
  9 11  1  0
 16 17  1  0
  6  5  2  0
  9 10  1  1
  8  9  1  0
 21 22  1  0
 15 45  1  0
  7 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
 14 44  1  0
 11 37  1  1
 12 38  1  0
 12 39  1  0
 12 40  1  0
 13 41  1  0
 13 42  1  0
 13 43  1  0
 19 50  1  0
 19 51  1  0
  5 31  1  0
 20 52  1  0
 20 53  1  0
 21 54  1  6
  1 26  1  0
  1 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  6
 18 49  1  0
 17 46  1  0
 17 47  1  0
 17 48  1  0
 10 36  1  0
 22 55  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₀O₅

Average Mass

350.4550 Da

Monoisotopic Mass

350.20932 Da

IUPAC Name

(4S,5Z,7S,10R,13R)-4,7,10-trihydroxy-7-methyl-11-methylidene-4-(propan-2-yl)-14-oxabicyclo[11.2.1]hexadeca-1(16),5-dien-15-one

Traditional Name

(4S,5Z,7S,10R,13R)-4,7,10-trihydroxy-4-isopropyl-7-methyl-11-methylidene-14-oxabicyclo[11.2.1]hexadeca-1(16),5-dien-15-one

CAS Registry Number

Not Available

SMILES

[H]O[C@@]1([H])C(=C([H])[H])C([H])([H])[C@@]2([H])OC(=O)C(=C2[H])C([H])([H])C([H])([H])[C@@](O[H])(\C([H])=C([H])/[C@](O[H])(C([H])([H])[H])C([H])([H])C1([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C20H30O5/c1-13(2)20(24)8-5-15-12-16(25-18(15)22)11-14(3)17(21)6-7-19(4,23)9-10-20/h9-10,12-13,16-17,21,23-24H,3,5-8,11H2,1-2,4H3/b10-9-/t16-,17-,19+,20-/m1/s1

InChI Key

LOIIZBXZZSSECJ-GZHUPFJTSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Croton gratissimus	JEOL database	Langat, M. K., et al, J. Nat. Prod. 74, 2349 (2011)

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Terpene lactones

Alternative Parents

Substituents

Terpene lactone
Sesquiterpenoid
2-furanone
Dihydrofuran
Tertiary alcohol
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Lactone
Secondary alcohol
Polyol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Organic oxygen compound
Organooxygen compound
Organic oxide
Alcohol
Carbonyl group
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.19	ALOGPS
logP	2.3	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	13.41	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	86.99 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	97.81 m³·mol⁻¹	ChemAxon
Polarizability	37.77 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

58163759

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101538652

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Langat, M. K., et al. (2011). Langat, M. K., et al, J. Nat. Prod. 74, 2349 (2011). J. Nat. Prod..

Showing NP-Card for (+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+ (NP0036337)

MOL for NP0036337 ((+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

3D MOL for NP0036337 ((+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

3D SDF for NP0036337 ((+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

3D-SDF for NP0036337 ((+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

PDB for NP0036337 ((+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

3D PDB for NP0036337 ((+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

SMILES for NP0036337 ((+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

INCHI for NP0036337 ((+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

Structure for NP0036337 ((+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

3D Structure for NP0036337 ((+)-(1S*,4S*,7R*,10R*)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

Showing NP-Card for (+)-(1S,4S,7R,10R)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+ (NP0036337)

MOL for NP0036337 ((+)-(1S,4S,7R,10R)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

3D MOL for NP0036337 ((+)-(1S,4S,7R,10R)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

3D SDF for NP0036337 ((+)-(1S,4S,7R,10R)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

3D-SDF for NP0036337 ((+)-(1S,4S,7R,10R)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

PDB for NP0036337 ((+)-(1S,4S,7R,10R)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

3D PDB for NP0036337 ((+)-(1S,4S,7R,10R)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

SMILES for NP0036337 ((+)-(1S,4S,7R,10R)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

INCHI for NP0036337 ((+)-(1S,4S,7R,10R)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

Structure for NP0036337 ((+)-(1S,4S,7R,10R)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)

3D Structure for NP0036337 ((+)-(1S,4S,7R,10R)-1,4,7-trihydroxycembra-2E,8(19),11Z-trien-20,10-ol+)