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Record Information
Version1.0
Created at2021-06-20 17:33:01 UTC
Updated at2021-06-30 00:03:24 UTC
NP-MRD IDNP0033563
Secondary Accession NumbersNone
Natural Product Identification
Common Nameokhotoside B1
Provided ByJEOL DatabaseJEOL Logo
Description okhotoside B1 is found in Cucumaria okhotensis. It was first documented in 2008 (Silchenko, A. S., et al.).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC56H87NaO27S
Average Mass1247.3300 Da
Monoisotopic Mass1246.50531 Da
IUPAC Namesodium (3R,4R,5R,6S)-6-{[(2S,4S,5S,6S,9R,12R,13R,16S,18S)-4-(acetyloxy)-2,6,13,17,17-pentamethyl-6-(4-methylpent-4-en-1-yl)-8-oxo-7-oxapentacyclo[10.8.0.0^{2,9}.0^{5,9}.0^{13,18}]icos-1(20)-en-16-yl]oxy}-5-{[(2S,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-4-{[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-methoxyoxan-2-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-hydroxyoxan-3-yl sulfate
Traditional Namesodium (3R,4R,5R,6S)-6-{[(2S,4S,5S,6S,9R,12R,13R,16S,18S)-4-(acetyloxy)-2,6,13,17,17-pentamethyl-6-(4-methylpent-4-en-1-yl)-8-oxo-7-oxapentacyclo[10.8.0.0^{2,9}.0^{5,9}.0^{13,18}]icos-1(20)-en-16-yl]oxy}-5-{[(2S,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-4-{[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-methoxyoxan-2-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-hydroxyoxan-3-yl sulfate
CAS Registry NumberNot Available
SMILES
[Na+].[H]OC([H])([H])[C@@]1([H])O[C@@]([H])(O[C@]2([H])[C@@]([H])(O[H])[C@]([H])(O[C@]3([H])[C@]([H])(O[C@@]([H])(O[C@@]4([H])[C@]([H])(O[C@@]5([H])C([H])([H])C([H])([H])[C@]6(C([H])([H])[H])[C@]7([H])C(=C([H])C([H])([H])[C@]6([H])C5(C([H])([H])[H])C([H])([H])[H])[C@]5(C([H])([H])[H])C([H])([H])[C@]([H])(OC(=O)C([H])([H])[H])[C@@]6([H])[C@](OC(=O)[C@@]56C([H])([H])C7([H])[H])(C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H])OC([H])([H])[C@@]([H])(O[S]([O-])(=O)=O)[C@]4([H])O[H])[C@]([H])(O[H])[C@@]3([H])O[H])C([H])([H])O[H])O[C@]([H])(C([H])([H])O[H])[C@@]2([H])O[H])[C@]([H])(O[H])[C@@]([H])(OC([H])([H])[H])[C@]1([H])O[H]
InChI Identifier
InChI=1S/C56H88O27S.Na/c1-24(2)11-10-16-55(8)46-28(74-25(3)60)19-54(7)27-12-13-33-52(4,5)34(15-17-53(33,6)26(27)14-18-56(46,54)51(68)82-55)78-50-45(37(63)32(23-73-50)83-84(69,70)71)81-47-39(65)38(64)42(31(22-59)77-47)79-49-41(67)44(36(62)30(21-58)76-49)80-48-40(66)43(72-9)35(61)29(20-57)75-48;/h12,26,28-50,57-59,61-67H,1,10-11,13-23H2,2-9H3,(H,69,70,71);/q;+1/p-1/t26-,28-,29+,30+,31+,32+,33+,34-,35+,36+,37-,38+,39+,40+,41+,42+,43-,44-,45+,46-,47-,48-,49-,50-,53+,54-,55-,56-;/m0./s1
InChI KeyJZEJFNJSKFLNDB-QCLYGJGDSA-M
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 500 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, C5D5N + H2O ( 4 : 1 ), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Cucumaria okhotensisJEOL database
    • Silchenko, A. S., et al, J. Nat. Prod. 71, 351 (2008)
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.33ALOGPS
logP-2.1ChemAxon
logS-2.9ALOGPS
pKa (Strongest Acidic)-2ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count24ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area404.4 ŲChemAxon
Rotatable Bond Count20ChemAxon
Refractivity281.68 m³·mol⁻¹ChemAxon
Polarizability123.85 ųChemAxon
Number of Rings9ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
External LinksNot Available
References
General References
  1. Silchenko, A. S., et al. (2008). Silchenko, A. S., et al, J. Nat. Prod. 71, 351 (2008) . J. Nat. Prod..