NP-MRD: Showing NP-Card for Gelliusterol D (NP0025750)

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Record Information

Version

1.0

Created at

2021-06-19 17:47:28 UTC

Updated at

2021-06-29 23:50:53 UTC

NP-MRD ID

NP0025750

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Gelliusterol D

Provided By

JEOL Database JEOL Logo

Description

Gelliusterol D is found in Gellius species. It was first documented in 2001 (Gallimore, W. A., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306192119473D          

 70 73  0  0  0  0            999 V2000
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M  END

     RDKit          3D

 70 73  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306192119473D          

 70 73  0  0  0  0            999 V2000
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M  END
> <DATABASE_ID>
NP0025750

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])C([H])([H])C2=C([H])C(=O)[C@@]3([H])[C@]4([H])C([H])([H])C([H])([H])[C@]([H])([C@@]([H])(C([H])([H])[H])C([H])([H])C#CC(O[H])(C([H])([H])[H])C([H])([H])[H])[C@@]4(C([H])([H])[H])C([H])([H])C([H])([H])[C@]3([H])[C@@]2(C([H])([H])[H])C([H])([H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C27H40O3/c1-17(7-6-12-25(2,3)30)20-8-9-21-24-22(11-14-27(20,21)5)26(4)13-10-19(28)15-18(26)16-23(24)29/h16-17,19-22,24,28,30H,7-11,13-15H2,1-5H3/t17-,19-,20+,21-,22-,24-,26-,27+/m0/s1

> <INCHI_KEY>
JQKVYCFGMHRVRG-ZPLHSRBHSA-N

> <FORMULA>
C27H40O3

> <MOLECULAR_WEIGHT>
412.614

> <EXACT_MASS>
412.297745148

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
49.19511795311884

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2R,5S,10S,11S,14R,15R)-5-hydroxy-14-[(2S)-6-hydroxy-6-methylhept-4-yn-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-9-one

> <ALOGPS_LOGP>
4.63

> <JCHEM_LOGP>
4.818883073333334

> <ALOGPS_LOGS>
-5.49

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
17.391302118371645

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.222111165789446

> <JCHEM_PKA_STRONGEST_BASIC>
-1.3680983533849584

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
122.30399999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.35e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,5S,10S,11S,14R,15R)-5-hydroxy-14-[(2S)-6-hydroxy-6-methylhept-4-yn-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-9-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

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   -4.4339    0.0345   -0.6279 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2550    0.0274   -1.9353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2338   -1.2414   -0.7216 H   0  0  0  0  0  0  0  0  0  0  0  0
 28 27  1  0
 13 12  1  0
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M  END

HEADER    PROTEIN                                 19-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-JUN-21         0                                  
HETATM    1  C   UNK     0      -3.786   4.313  -1.067  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.302   2.874  -1.331  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.239   2.890  -2.448  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.972   3.517  -2.042  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.066   4.008  -1.689  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.340   4.594  -1.238  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.190   6.098  -1.014  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.824   3.903   0.034  0.00  0.00           C+0
HETATM    9  O   UNK     0       2.328   4.388  -2.247  0.00  0.00           O+0
HETATM   10  C   UNK     0      -2.865   2.184  -0.006  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.015   2.176   1.041  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.820   0.932   1.916  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.460   0.383   1.496  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.125  -1.077   1.837  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.116  -1.330   3.342  0.00  0.00           C+0
HETATM   16  O   UNK     0      -2.716  -0.640   4.161  0.00  0.00           O+0
HETATM   17  C   UNK     0      -1.402  -2.531   3.836  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.622  -3.280   3.040  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.014  -4.539   3.591  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.513  -4.611   3.301  0.00  0.00           C+0
HETATM   21  O   UNK     0       2.005  -5.881   3.716  0.00  0.00           O+0
HETATM   22  C   UNK     0       1.788  -4.424   1.813  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.197  -3.111   1.301  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.328  -2.934   1.575  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.126  -3.908   0.678  0.00  0.00           C+0
HETATM   26  C   UNK     0      -0.714  -1.430   1.288  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.518  -1.003  -0.186  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.962   0.438  -0.475  0.00  0.00           C+0
HETATM   29  C   UNK     0      -2.409   0.693  -0.026  0.00  0.00           C+0
HETATM   30  C   UNK     0      -3.385  -0.168  -0.866  0.00  0.00           C+0
HETATM   31  H   UNK     0      -4.053   4.814  -2.004  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.015   4.912  -0.569  0.00  0.00           H+0
HETATM   33  H   UNK     0      -4.679   4.325  -0.435  0.00  0.00           H+0
HETATM   34  H   UNK     0      -4.168   2.331  -1.733  0.00  0.00           H+0
HETATM   35  H   UNK     0      -2.637   3.429  -3.317  0.00  0.00           H+0
HETATM   36  H   UNK     0      -2.053   1.873  -2.804  0.00  0.00           H+0
HETATM   37  H   UNK     0       2.146   6.546  -0.720  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.448   6.321  -0.239  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.879   6.604  -1.935  0.00  0.00           H+0
HETATM   40  H   UNK     0       1.976   2.830  -0.136  0.00  0.00           H+0
HETATM   41  H   UNK     0       2.791   4.306   0.355  0.00  0.00           H+0
HETATM   42  H   UNK     0       1.109   4.016   0.857  0.00  0.00           H+0
HETATM   43  H   UNK     0       1.934   4.677  -3.087  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.048   2.781   0.428  0.00  0.00           H+0
HETATM   45  H   UNK     0      -3.979   3.087   1.650  0.00  0.00           H+0
HETATM   46  H   UNK     0      -5.003   2.136   0.569  0.00  0.00           H+0
HETATM   47  H   UNK     0      -4.620   0.205   1.736  0.00  0.00           H+0
HETATM   48  H   UNK     0      -3.856   1.204   2.975  0.00  0.00           H+0
HETATM   49  H   UNK     0      -1.708   1.009   2.006  0.00  0.00           H+0
HETATM   50  H   UNK     0      -2.891  -1.736   1.416  0.00  0.00           H+0
HETATM   51  H   UNK     0      -1.583  -2.776   4.878  0.00  0.00           H+0
HETATM   52  H   UNK     0      -0.139  -4.626   4.675  0.00  0.00           H+0
HETATM   53  H   UNK     0      -0.488  -5.417   3.164  0.00  0.00           H+0
HETATM   54  H   UNK     0       2.038  -3.842   3.881  0.00  0.00           H+0
HETATM   55  H   UNK     0       2.963  -5.894   3.547  0.00  0.00           H+0
HETATM   56  H   UNK     0       1.391  -5.274   1.245  0.00  0.00           H+0
HETATM   57  H   UNK     0       2.870  -4.436   1.634  0.00  0.00           H+0
HETATM   58  H   UNK     0       1.401  -3.045   0.226  0.00  0.00           H+0
HETATM   59  H   UNK     0       1.752  -2.288   1.772  0.00  0.00           H+0
HETATM   60  H   UNK     0      -0.868  -3.789  -0.380  0.00  0.00           H+0
HETATM   61  H   UNK     0      -0.926  -4.956   0.925  0.00  0.00           H+0
HETATM   62  H   UNK     0      -2.206  -3.763   0.777  0.00  0.00           H+0
HETATM   63  H   UNK     0      -0.004  -0.812   1.864  0.00  0.00           H+0
HETATM   64  H   UNK     0       0.541  -1.084  -0.458  0.00  0.00           H+0
HETATM   65  H   UNK     0      -1.057  -1.676  -0.859  0.00  0.00           H+0
HETATM   66  H   UNK     0      -0.280   1.127   0.039  0.00  0.00           H+0
HETATM   67  H   UNK     0      -0.839   0.618  -1.546  0.00  0.00           H+0
HETATM   68  H   UNK     0      -4.434   0.035  -0.628  0.00  0.00           H+0
HETATM   69  H   UNK     0      -3.255   0.027  -1.935  0.00  0.00           H+0
HETATM   70  H   UNK     0      -3.234  -1.241  -0.722  0.00  0.00           H+0
CONECT    1    2   31   32   33                                             
CONECT    2   10    1    3   34                                             
CONECT    3    2    4   35   36                                             
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8    9                                             
CONECT    7    6   37   38   39                                             
CONECT    8    6   40   41   42                                             
CONECT    9    6   43                                                       
CONECT   10   11   29    2   44                                             
CONECT   11   12   10   45   46                                             
CONECT   12   13   11   47   48                                             
CONECT   13   12   49   14   29                                             
CONECT   14   15   26   50   13                                             
CONECT   15   17   14   16                                                  
CONECT   16   15                                                            
CONECT   17   18   15   51                                                  
CONECT   18   17   19   24                                                  
CONECT   19   20   18   52   53                                             
CONECT   20   22   19   21   54                                             
CONECT   21   20   55                                                       
CONECT   22   20   23   56   57                                             
CONECT   23   22   24   58   59                                             
CONECT   24   25   26   23   18                                             
CONECT   25   24   60   61   62                                             
CONECT   26   24   14   63   27                                             
CONECT   27   28   26   64   65                                             
CONECT   28   27   29   66   67                                             
CONECT   29   10   30   13   28                                             
CONECT   30   29   68   69   70                                             
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    1                                                            
CONECT   34    2                                                            
CONECT   35    3                                                            
CONECT   36    3                                                            
CONECT   37    7                                                            
CONECT   38    7                                                            
CONECT   39    7                                                            
CONECT   40    8                                                            
CONECT   41    8                                                            
CONECT   42    8                                                            
CONECT   43    9                                                            
CONECT   44   10                                                            
CONECT   45   11                                                            
CONECT   46   11                                                            
CONECT   47   12                                                            
CONECT   48   12                                                            
CONECT   49   13                                                            
CONECT   50   14                                                            
CONECT   51   17                                                            
CONECT   52   19                                                            
CONECT   53   19                                                            
CONECT   54   20                                                            
CONECT   55   21                                                            
CONECT   56   22                                                            
CONECT   57   22                                                            
CONECT   58   23                                                            
CONECT   59   23                                                            
CONECT   60   25                                                            
CONECT   61   25                                                            
CONECT   62   25                                                            
CONECT   63   26                                                            
CONECT   64   27                                                            
CONECT   65   27                                                            
CONECT   66   28                                                            
CONECT   67   28                                                            
CONECT   68   30                                                            
CONECT   69   30                                                            
CONECT   70   30                                                            
MASTER        0    0    0    0    0    0    0    0   70    0  146    0
END

RDKit          3D

70 73  0  0  0  0  0  0  0  0999 V2000
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  8 42  1  0
  9 43  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₀O₃

Average Mass

412.6140 Da

Monoisotopic Mass

412.29775 Da

IUPAC Name

(1S,2R,5S,10S,11S,14R,15R)-5-hydroxy-14-[(2S)-6-hydroxy-6-methylhept-4-yn-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-9-one

Traditional Name

(1S,2R,5S,10S,11S,14R,15R)-5-hydroxy-14-[(2S)-6-hydroxy-6-methylhept-4-yn-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-9-one

CAS Registry Number

Not Available

SMILES

[H]O[C@]1([H])C([H])([H])C2=C([H])C(=O)[C@@]3([H])[C@]4([H])C([H])([H])C([H])([H])[C@]([H])([C@@]([H])(C([H])([H])[H])C([H])([H])C#CC(O[H])(C([H])([H])[H])C([H])([H])[H])[C@@]4(C([H])([H])[H])C([H])([H])C([H])([H])[C@]3([H])[C@@]2(C([H])([H])[H])C([H])([H])C1([H])[H]

InChI Identifier

InChI=1S/C27H40O3/c1-17(7-6-12-25(2,3)30)20-8-9-21-24-22(11-14-27(20,21)5)26(4)13-10-19(28)15-18(26)16-23(24)29/h16-17,19-22,24,28,30H,7-11,13-15H2,1-5H3/t17-,19-,20+,21-,22-,24-,26-,27+/m0/s1

InChI Key

JQKVYCFGMHRVRG-ZPLHSRBHSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Gellius species	JEOL database	Gallimore, W. A., et al, J. Nat. Prod. 64, 741 (2001)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.63	ALOGPS
logP	4.82	ChemAxon
logS	-5.5	ALOGPS
pKa (Strongest Acidic)	15.22	ChemAxon
pKa (Strongest Basic)	-1.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	122.3 m³·mol⁻¹	ChemAxon
Polarizability	49.2 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Gallimore, W. A., et al. (2001). Gallimore, W. A., et al, J. Nat. Prod. 64, 741 (2001). J. Nat. Prod..

Showing NP-Card for Gelliusterol D (NP0025750)

MOL for NP0025750 (Gelliusterol D)

3D MOL for NP0025750 (Gelliusterol D)

3D SDF for NP0025750 (Gelliusterol D)

3D-SDF for NP0025750 (Gelliusterol D)

PDB for NP0025750 (Gelliusterol D)

3D PDB for NP0025750 (Gelliusterol D)

SMILES for NP0025750 (Gelliusterol D)

INCHI for NP0025750 (Gelliusterol D)

Structure for NP0025750 (Gelliusterol D)

3D Structure for NP0025750 (Gelliusterol D)