Np mrd loader

Record Information
Version1.0
Created at2021-06-19 17:44:57 UTC
Updated at2021-06-29 23:50:47 UTC
NP-MRD IDNP0025689
Secondary Accession NumbersNone
Natural Product Identification
Common NameProanthocyanidin A-2
Provided ByJEOL DatabaseJEOL Logo
DescriptionProanthocyanidin A2, also known as ec-(4b,8)(2b,7)-ec or procyanidin A2, belongs to the class of organic compounds known as biflavonoids and polyflavonoids. These are organic compounds containing at least two flavan/flavone units. These units are usually linked through CC or C-O-C bonds. Some examples include C2-O-C3, C2-O-C4, C3'-C3''', and C6-C8''. Proanthocyanidin A2 is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, proanthocyanidin A2 has been detected, but not quantified in, several different foods, such as chinese cinnamons, ceylon cinnamons, lingonberries, cinnamons, and peanuts. This could make proanthocyanidin A2 a potential biomarker for the consumption of these foods. Procyanidin A2 is a A type proanthocyanidin. Proanthocyanidin A-2 is found in Aesculus hippocastanum, Apis cerana, Arachis hypogaea, Ceratiola ericoides, Cinchona pubescens, Cinnamomum aromaticum, Cinnamomum bejolghota, Crataegus sinaica, Cupania americana, Cupania latifolia, Dimocarpus longan, Ephedra sp., Garcinia mangostana, Hypericum perforatum, Ixora coccinea, Litchi chinensis, Parameria laevigata MOLDENKE, Paullinia cupana, Pavetta owariensis, Rumex acetosa, Theobroma cacao, Urceola micrantha and Vaccinium vitis-idaea. It was first documented in 1998 (PMID: 23195766). Procyanidin B2 can be converted into procyanidin A2 by radical oxidation using 1,1-diphenyl-2-picrylhydrazyl (DPPH) radicals under neutral conditions (PMID: 22020306) (PMID: 23268742).
Structure
Thumb
Synonyms
ValueSource
Epicatechin-(2beta->7,4beta->8)-epicatechinChEBI
Epicatechin-(2b->7,4b->8)-epicatechinGenerator
Epicatechin-(2β->7,4β->8)-epicatechinGenerator
(+)-Proanthocyanidin a2HMDB
EC-(4b,8)(2b,7)-ecHMDB
Proanthocyanidin a-2HMDB
Procyanidin a2HMDB
Procyanidin dimer a2HMDB
ProcyanidoepicatechinHMDB
Procyanidol a2HMDB
Chemical FormulaC30H24O12
Average Mass576.5100 Da
Monoisotopic Mass576.12678 Da
IUPAC Name(1R,5R,6R,13S,21R)-5,13-bis(3,4-dihydroxyphenyl)-4,12,14-trioxapentacyclo[11.7.1.0^{2,11}.0^{3,8}.0^{15,20}]henicosa-2,8,10,15,17,19-hexaene-6,9,17,19,21-pentol
Traditional Name(1R,5R,6R,13S,21R)-5,13-bis(3,4-dihydroxyphenyl)-4,12,14-trioxapentacyclo[11.7.1.0^{2,11}.0^{3,8}.0^{15,20}]henicosa-2,8,10,15,17,19-hexaene-6,9,17,19,21-pentol
CAS Registry NumberNot Available
SMILES
[H]OC1=C([H])C(O[H])=C2C(O[C@]3(OC4=C([H])C(O[H])=C5C(O[C@]([H])(C6=C([H])C(O[H])=C(O[H])C([H])=C6[H])[C@]([H])(O[H])C5([H])[H])=C4[C@]2([H])[C@@]3([H])O[H])C2=C([H])C([H])=C(O[H])C(O[H])=C2[H])=C1[H]
InChI Identifier
InChI=1S/C30H24O12/c31-13-7-20(37)24-22(8-13)41-30(12-2-4-16(33)19(36)6-12)29(39)26(24)25-23(42-30)10-17(34)14-9-21(38)27(40-28(14)25)11-1-3-15(32)18(35)5-11/h1-8,10,21,26-27,29,31-39H,9H2/t21-,26-,27-,29-,30+/m1/s1
InChI KeyNSEWTSAADLNHNH-LSBOWGMISA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 400 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 500 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CD3OD, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Aesculus hippocastanumLOTUS Database
Apis ceranaLOTUS Database
Arachis hypogaeaLOTUS Database
Ceratiola ericoidesLOTUS Database
Cinchona pubescensLOTUS Database
Cinnamomum aromaticumLOTUS Database
Cinnamomum bejolghotaLOTUS Database
Crataegus sinaicaLOTUS Database
Cupania americanaLOTUS Database
Cupania latifoliaLOTUS Database
Dimocarpus longanLOTUS Database
Ephedra sp.Plant
Garcinia mangostanaLOTUS Database
Hypericum perforatumLOTUS Database
Ixora coccineaLOTUS Database
Litchi chinensisLOTUS Database
Parameria laevigataJEOL database
    • Kamiya, K., et al, Chem. Pharm. Bull. 49, 551 (2001)
Paullinia cupanaLOTUS Database
Pavetta owariensisLOTUS Database
Rumex acetosaLOTUS Database
Theobroma cacaoLOTUS Database
Urceola micranthaLOTUS Database
Vaccinium vitis-idaeaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as biflavonoids and polyflavonoids. These are organic compounds containing at least two flavan/flavone units. These units are usually linked through CC or C-O-C bonds. Some examples include C2-O-C3, C2-O-C4, C3'-C3''', and C6-C8''.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassBiflavonoids and polyflavonoids
Direct ParentBiflavonoids and polyflavonoids
Alternative Parents
Substituents
  • A-type proanthocyanidin
  • Bi- and polyflavonoid skeleton
  • Proanthocyanidin
  • Catechin
  • Pyranoflavonoid
  • Flavan-3-ol
  • Hydroxyflavonoid
  • 3'-hydroxyflavonoid
  • 7-hydroxyflavonoid
  • 5-hydroxyflavonoid
  • 4'-hydroxyflavonoid
  • 3-hydroxyflavonoid
  • Flavan
  • Pyranochromene
  • Chromane
  • 1-benzopyran
  • Benzopyran
  • Catechol
  • Alkyl aryl ether
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Ketal
  • 1-hydroxy-4-unsubstituted benzenoid
  • Benzenoid
  • Monocyclic benzene moiety
  • Secondary alcohol
  • Polyol
  • Acetal
  • Organoheterocyclic compound
  • Oxacycle
  • Ether
  • Hydrocarbon derivative
  • Alcohol
  • Organic oxygen compound
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.43ALOGPS
logP3.59ChemAxon
logS-3.7ALOGPS
pKa (Strongest Acidic)8.66ChemAxon
pKa (Strongest Basic)-3.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area209.76 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity144.2 m³·mol⁻¹ChemAxon
Polarizability57.37 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0037655
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB016778
KNApSAcK IDC00002934
Chemspider IDNot Available
KEGG Compound IDC10237
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkProanthocyanidin_A2
METLIN IDNot Available
PubChem Compound124025
PDB IDNot Available
ChEBI ID28472
Good Scents IDNot Available
References
General References
  1. Gallina L, Dal Pozzo F, Galligioni V, Bombardelli E, Scagliarini A: Inhibition of viral RNA synthesis in canine distemper virus infection by proanthocyanidin A2. Antiviral Res. 2011 Dec;92(3):447-52. doi: 10.1016/j.antiviral.2011.10.004. Epub 2011 Oct 13. [PubMed:22020306 ]
  2. Shahat AA, Ismail SI, Hammouda FM, Azzam SA, Lemiere G, De Bruyne T, De Swaef S, Pieters L, Vlietinck A: Anti-HIV activity of flavonoids and proanthocyanidins from Crataegus sinaica. Phytomedicine. 1998 Apr;5(2):133-6. doi: 10.1016/S0944-7113(98)80010-X. [PubMed:23195766 ]
  3. Pesca MS, Dal Piaz F, Sanogo R, Vassallo A, Bruzual de Abreu M, Rapisarda A, Germano MP, Certo G, De Falco S, De Tommasi N, Braca A: Bioassay-guided isolation of proanthocyanidins with antiangiogenic activities. J Nat Prod. 2013 Jan 25;76(1):29-35. doi: 10.1021/np300614u. Epub 2012 Dec 26. [PubMed:23268742 ]
  4. Kamiya, K., et al. (2001). Kamiya, K., et al, Chem. Pharm. Bull. 49, 551 (2001). Chem. Pharm. Bull..