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Record Information
Version1.0
Created at2021-06-19 17:43:58 UTC
Updated at2021-06-29 23:50:45 UTC
NP-MRD IDNP0025665
Secondary Accession NumbersNone
Natural Product Identification
Common NameScillarenin 3-O-alpha-L-rhamnopyranosyl-(1-4)-alpha-L-rhamnopyranoside
Provided ByJEOL DatabaseJEOL Logo
Description3Beta-(4-O-alpha-L-Rhamnopyranosyl-alpha-L-rhamnopyranosyloxy)-8,14-dihydroxybufa-4,20,22-trienolide belongs to the class of organic compounds known as bufanolides and derivatives. These are steroid lactones containing a pyran-2-one moiety linked to the C17 atom of a cyclopenta[a]phenanthrene derivative. Scillarenin 3-O-alpha-L-rhamnopyranosyl-(1-4)-alpha-L-rhamnopyranoside is found in Urginea maritima. It was first documented in 2001 (IIzuka, M., et al.). Based on a literature review very few articles have been published on 3beta-(4-O-alpha-L-Rhamnopyranosyl-alpha-L-rhamnopyranosyloxy)-8,14-dihydroxybufa-4,20,22-trienolide.
Structure
Thumb
Synonyms
ValueSource
3b-(4-O-a-L-Rhamnopyranosyl-a-L-rhamnopyranosyloxy)-8,14-dihydroxybufa-4,20,22-trienolideGenerator
3Β-(4-O-α-L-rhamnopyranosyl-α-L-rhamnopyranosyloxy)-8,14-dihydroxybufa-4,20,22-trienolideGenerator
Chemical FormulaC36H52O13
Average Mass692.7990 Da
Monoisotopic Mass692.34079 Da
IUPAC Name5-[(1R,2R,5S,10S,11R,14S,15R)-5-{[(2R,3R,4S,5R,6S)-3,4-dihydroxy-6-methyl-5-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-2-yl]oxy}-10,11-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-6-en-14-yl]-2H-pyran-2-one
Traditional Name5-[(1R,2R,5S,10S,11R,14S,15R)-5-{[(2R,3R,4S,5R,6S)-3,4-dihydroxy-6-methyl-5-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-2-yl]oxy}-10,11-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-6-en-14-yl]pyran-2-one
CAS Registry NumberNot Available
SMILES
[H]O[C@@]1([H])[C@]([H])(O[C@@]2([H])[C@@]([H])(O[C@@]([H])(O[C@]3([H])C([H])=C4C([H])([H])C([H])([H])[C@]5(O[H])[C@]([H])(C([H])([H])C([H])([H])[C@]6(C([H])([H])[H])[C@@]([H])(C7=C([H])OC(=O)C([H])=C7[H])C([H])([H])C([H])([H])[C@]56O[H])[C@@]4(C([H])([H])[H])C([H])([H])C3([H])[H])[C@]([H])(O[H])[C@]2([H])O[H])C([H])([H])[H])O[C@@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@@]1([H])O[H]
InChI Identifier
InChI=1S/C36H52O13/c1-17-25(38)26(39)28(41)32(46-17)49-30-18(2)47-31(29(42)27(30)40)48-21-8-11-33(3)20(15-21)7-13-35(43)23(33)10-12-34(4)22(9-14-36(34,35)44)19-5-6-24(37)45-16-19/h5-6,15-18,21-23,25-32,38-44H,7-14H2,1-4H3/t17-,18-,21-,22+,23+,25-,26+,27-,28+,29+,30-,31-,32-,33-,34+,35-,36+/m0/s1
InChI KeyUZPUJZIMEFTBBX-WCCUYYINSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 400 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 500 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, C5D5N, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Drimia maritimaJEOL database
    • IIzuka, M., et al, Chem. Pharm. Bull. 49, 282 (2001)
Chemical Taxonomy
Description Belongs to the class of organic compounds known as bufanolides and derivatives. These are steroid lactones containing a pyran-2-one moiety linked to the C17 atom of a cyclopenta[a]phenanthrene derivative.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassSteroid lactones
Direct ParentBufanolides and derivatives
Alternative Parents
Substituents
  • Bufanolide-skeleton
  • Steroidal glycoside
  • 14-hydroxysteroid
  • Hydroxysteroid
  • Delta-4-steroid
  • Disaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Pyranone
  • Oxane
  • Pyran
  • Tertiary alcohol
  • Heteroaromatic compound
  • Cyclic alcohol
  • Lactone
  • Secondary alcohol
  • Polyol
  • Acetal
  • Organoheterocyclic compound
  • Oxacycle
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.44ALOGPS
logP0.58ChemAxon
logS-3.2ALOGPS
pKa (Strongest Acidic)11.92ChemAxon
pKa (Strongest Basic)-3.5ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area204.83 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity172.3 m³·mol⁻¹ChemAxon
Polarizability73.3 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8875181
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10699840
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. IIzuka, M., et al. (2001). IIzuka, M., et al, Chem. Pharm. Bull. 49, 282 (2001). Chem. Pharm. Bull..