NP-MRD: Showing NP-Card for Nafuredin (NP0025553)

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Record Information

Version

1.0

Created at

2021-06-19 17:38:49 UTC

Updated at

2021-06-29 23:50:35 UTC

NP-MRD ID

NP0025553

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Nafuredin

Provided By

JEOL Database JEOL Logo

Description

Nafuredin is found in Aspergillus niger FT-0554. It was first documented in 2001 (Ui, H., et al.).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306192119383D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306192119383D          

 58 59  0  0  0  0            999 V2000
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    1.2209   -4.6238   -0.6163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2456   -2.5721    0.2251 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0782   -2.6819    3.2714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1632   -1.7485    1.3520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7609   -2.1997    5.4237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8403   -0.6855    5.3118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0679   -2.2318    4.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8268    0.0135    4.0303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5539   -1.5525    3.7072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3716   -1.1371    1.2490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1482    0.5924    1.1516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4298   -0.5503    2.4713 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8013    1.0684    2.8229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2076    1.6140    2.1002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1806   -0.0207   -0.5031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7689    2.6015    0.3935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7738    0.9632   -2.2093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8940    3.0591   -3.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9813    1.8765    0.4515 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4135    1.9096    0.0383 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9563    4.4242    0.5519 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4686    5.4062   -2.2413 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0560    4.7190   -0.7178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7728    5.9318   -0.7022 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  7  2  0  0  0  0
 17 16  1  0  0  0  0
  7  6  1  0  0  0  0
 23 21  1  0  0  0  0
  6  5  2  0  0  0  0
 16 15  2  0  0  0  0
  5  3  1  0  0  0  0
 23 25  1  0  0  0  0
  3  2  1  0  0  0  0
 15 14  1  0  0  0  0
  2  1  1  0  0  0  0
 21 19  1  0  0  0  0
 25 24  1  0  0  0  0
 23 24  1  0  0  0  0
 14 13  2  0  0  0  0
 21 22  1  0  0  0  0
 19 18  1  0  0  0  0
 11 12  1  0  0  0  0
 13 11  1  0  0  0  0
 19 20  2  0  0  0  0
 18 17  1  0  0  0  0
 25 26  1  1  0  0  0
 11 10  1  0  0  0  0
  8  9  1  0  0  0  0
 17 25  1  0  0  0  0
  3  4  1  0  0  0  0
 10  8  1  0  0  0  0
 17 52  1  6  0  0  0
 23 55  1  1  0  0  0
 21 53  1  1  0  0  0
 16 51  1  0  0  0  0
 15 50  1  0  0  0  0
 14 49  1  0  0  0  0
 13 48  1  0  0  0  0
 11 44  1  6  0  0  0
 10 42  1  0  0  0  0
 10 43  1  0  0  0  0
  7 38  1  0  0  0  0
  6 37  1  0  0  0  0
  5 36  1  0  0  0  0
  3 32  1  1  0  0  0
  2 30  1  0  0  0  0
  2 31  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
  1 29  1  0  0  0  0
 22 54  1  0  0  0  0
 12 45  1  0  0  0  0
 12 46  1  0  0  0  0
 12 47  1  0  0  0  0
 26 56  1  0  0  0  0
 26 57  1  0  0  0  0
 26 58  1  0  0  0  0
  9 39  1  0  0  0  0
  9 40  1  0  0  0  0
  9 41  1  0  0  0  0
  4 33  1  0  0  0  0
  4 34  1  0  0  0  0
  4 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0025553

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])C(=O)O[C@@]([H])(C(\[H])=C(/[H])\C(\[H])=C(/[H])[C@]([H])(C([H])([H])[H])C([H])([H])C(=C(/[H])\C(\[H])=C(/[H])[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])\C([H])([H])[H])[C@@]2(O[C@]12[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C22H32O4/c1-6-15(2)11-9-12-17(4)14-16(3)10-7-8-13-18-22(5)20(26-22)19(23)21(24)25-18/h7-13,15-16,18-20,23H,6,14H2,1-5H3/b10-7+,11-9+,13-8+,17-12+/t15-,16-,18-,19-,20+,22-/m0/s1

> <INCHI_KEY>
NMEGHQQRWKBPQO-GQQMYULRSA-N

> <FORMULA>
C22H32O4

> <MOLECULAR_WEIGHT>
360.494

> <EXACT_MASS>
360.23005951

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
41.178235168252385

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2S,5S,6R)-5-hydroxy-1-methyl-2-[(1E,3E,5R,7E,9E,11S)-5,7,11-trimethyltrideca-1,3,7,9-tetraen-1-yl]-3,7-dioxabicyclo[4.1.0]heptan-4-one

> <ALOGPS_LOGP>
6.28

> <JCHEM_LOGP>
4.682315029

> <ALOGPS_LOGS>
-4.76

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.639431618908402

> <JCHEM_PKA_STRONGEST_BASIC>
-4.268712609889465

> <JCHEM_POLAR_SURFACE_AREA>
59.06

> <JCHEM_REFRACTIVITY>
107.18980000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.29e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,5S,6R)-5-hydroxy-1-methyl-2-[(1E,3E,5R,7E,9E,11S)-5,7,11-trimethyltrideca-1,3,7,9-tetraen-1-yl]-3,7-dioxabicyclo[4.1.0]heptan-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 58 59  0  0  0  0  0  0  0  0999 V2000
    2.8357   -1.1249    1.1511 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6076   -2.4394    0.4150 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6140   -3.3721    1.1319 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5563   -4.7270    0.4220 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2270   -2.7744    1.1848 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4167   -2.4821    2.3267 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7363   -1.8884    2.3420 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4482   -1.4980    3.4187 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9948   -1.6665    4.8501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8205   -0.8295    3.3240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3300   -0.3004    1.9583 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7574    0.2360    2.1114 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4464    0.8034    1.4140 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9366    0.7974    0.1725 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0304    1.8132   -0.3080 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4960    1.7768   -1.5389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4962    2.7347   -2.1378 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6762    1.9343   -2.4557 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6745    1.7440   -1.5578 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6125    0.9822   -1.7945 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5850    2.4932   -0.2227 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8650    2.6406    0.3883 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9633    3.8411   -0.3569 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1797    4.5055   -1.6101 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1407    3.9792   -1.3606 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1638    5.0652   -1.2466 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9255   -0.5188    1.1835 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6078   -0.5396    0.6418 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1698   -1.3032    2.1780 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5743   -2.9492    0.3182 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2625   -2.2232   -0.6041 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9820   -3.5486    2.1514 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8674   -5.4092    0.9327 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5441   -5.2003    0.4104 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2209   -4.6238   -0.6163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2456   -2.5721    0.2251 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0782   -2.6819    3.2714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1632   -1.7485    1.3520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7609   -2.1997    5.4237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8403   -0.6855    5.3118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0679   -2.2318    4.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8268    0.0135    4.0303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5539   -1.5525    3.7072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3716   -1.1371    1.2490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1482    0.5924    1.1516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4298   -0.5503    2.4713 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8013    1.0684    2.8229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2076    1.6140    2.1002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1806   -0.0207   -0.5031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7689    2.6015    0.3935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7738    0.9632   -2.2093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8940    3.0591   -3.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9813    1.8765    0.4515 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4135    1.9096    0.0383 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9563    4.4242    0.5519 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4686    5.4062   -2.2413 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0560    4.7190   -0.7178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7728    5.9318   -0.7022 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  7  2  0
 17 16  1  0
  7  6  1  0
 23 21  1  0
  6  5  2  0
 16 15  2  0
  5  3  1  0
 23 25  1  0
  3  2  1  0
 15 14  1  0
  2  1  1  0
 21 19  1  0
 25 24  1  0
 23 24  1  0
 14 13  2  0
 21 22  1  0
 19 18  1  0
 11 12  1  0
 13 11  1  0
 19 20  2  0
 18 17  1  0
 25 26  1  1
 11 10  1  0
  8  9  1  0
 17 25  1  0
  3  4  1  0
 10  8  1  0
 17 52  1  6
 23 55  1  1
 21 53  1  1
 16 51  1  0
 15 50  1  0
 14 49  1  0
 13 48  1  0
 11 44  1  6
 10 42  1  0
 10 43  1  0
  7 38  1  0
  6 37  1  0
  5 36  1  0
  3 32  1  1
  2 30  1  0
  2 31  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
 22 54  1  0
 12 45  1  0
 12 46  1  0
 12 47  1  0
 26 56  1  0
 26 57  1  0
 26 58  1  0
  9 39  1  0
  9 40  1  0
  9 41  1  0
  4 33  1  0
  4 34  1  0
  4 35  1  0
M  END

HEADER    PROTEIN                                 19-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-JUN-21         0                                  
HETATM    1  C   UNK     0       2.836  -1.125   1.151  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.608  -2.439   0.415  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.614  -3.372   1.132  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.556  -4.727   0.422  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.227  -2.774   1.185  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.417  -2.482   2.327  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.736  -1.888   2.342  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.448  -1.498   3.419  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.995  -1.667   4.850  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.821  -0.830   3.324  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.330  -0.300   1.958  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.757   0.236   2.111  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.446   0.803   1.414  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.937   0.797   0.173  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.030   1.813  -0.308  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.496   1.777  -1.539  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.496   2.735  -2.138  0.00  0.00           C+0
HETATM   18  O   UNK     0       0.676   1.934  -2.456  0.00  0.00           O+0
HETATM   19  C   UNK     0       1.675   1.744  -1.558  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.612   0.982  -1.795  0.00  0.00           O+0
HETATM   21  C   UNK     0       1.585   2.493  -0.223  0.00  0.00           C+0
HETATM   22  O   UNK     0       2.865   2.641   0.388  0.00  0.00           O+0
HETATM   23  C   UNK     0       0.963   3.841  -0.357  0.00  0.00           C+0
HETATM   24  O   UNK     0       1.180   4.505  -1.610  0.00  0.00           O+0
HETATM   25  C   UNK     0      -0.141   3.979  -1.361  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.164   5.065  -1.247  0.00  0.00           C+0
HETATM   27  H   UNK     0       1.926  -0.519   1.184  0.00  0.00           H+0
HETATM   28  H   UNK     0       3.608  -0.540   0.642  0.00  0.00           H+0
HETATM   29  H   UNK     0       3.170  -1.303   2.178  0.00  0.00           H+0
HETATM   30  H   UNK     0       3.574  -2.949   0.318  0.00  0.00           H+0
HETATM   31  H   UNK     0       2.263  -2.223  -0.604  0.00  0.00           H+0
HETATM   32  H   UNK     0       1.982  -3.549   2.151  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.867  -5.409   0.933  0.00  0.00           H+0
HETATM   34  H   UNK     0       2.544  -5.200   0.410  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.221  -4.624  -0.616  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.246  -2.572   0.225  0.00  0.00           H+0
HETATM   37  H   UNK     0       0.078  -2.682   3.271  0.00  0.00           H+0
HETATM   38  H   UNK     0      -2.163  -1.749   1.352  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.761  -2.200   5.424  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.840  -0.686   5.312  0.00  0.00           H+0
HETATM   41  H   UNK     0      -1.068  -2.232   4.961  0.00  0.00           H+0
HETATM   42  H   UNK     0      -3.827   0.014   4.030  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.554  -1.553   3.707  0.00  0.00           H+0
HETATM   44  H   UNK     0      -4.372  -1.137   1.249  0.00  0.00           H+0
HETATM   45  H   UNK     0      -6.148   0.592   1.152  0.00  0.00           H+0
HETATM   46  H   UNK     0      -6.430  -0.550   2.471  0.00  0.00           H+0
HETATM   47  H   UNK     0      -5.801   1.068   2.823  0.00  0.00           H+0
HETATM   48  H   UNK     0      -3.208   1.614   2.100  0.00  0.00           H+0
HETATM   49  H   UNK     0      -3.181  -0.021  -0.503  0.00  0.00           H+0
HETATM   50  H   UNK     0      -1.769   2.602   0.394  0.00  0.00           H+0
HETATM   51  H   UNK     0      -1.774   0.963  -2.209  0.00  0.00           H+0
HETATM   52  H   UNK     0      -0.894   3.059  -3.107  0.00  0.00           H+0
HETATM   53  H   UNK     0       0.981   1.877   0.452  0.00  0.00           H+0
HETATM   54  H   UNK     0       3.414   1.910   0.038  0.00  0.00           H+0
HETATM   55  H   UNK     0       0.956   4.424   0.552  0.00  0.00           H+0
HETATM   56  H   UNK     0      -1.469   5.406  -2.241  0.00  0.00           H+0
HETATM   57  H   UNK     0      -2.056   4.719  -0.718  0.00  0.00           H+0
HETATM   58  H   UNK     0      -0.773   5.932  -0.702  0.00  0.00           H+0
CONECT    1    2   27   28   29                                             
CONECT    2    3    1   30   31                                             
CONECT    3    5    2    4   32                                             
CONECT    4    3   33   34   35                                             
CONECT    5    6    3   36                                                  
CONECT    6    7    5   37                                                  
CONECT    7    8    6   38                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8   39   40   41                                             
CONECT   10   11    8   42   43                                             
CONECT   11   12   13   10   44                                             
CONECT   12   11   45   46   47                                             
CONECT   13   14   11   48                                                  
CONECT   14   15   13   49                                                  
CONECT   15   16   14   50                                                  
CONECT   16   17   15   51                                                  
CONECT   17   16   18   25   52                                             
CONECT   18   19   17                                                       
CONECT   19   21   18   20                                                  
CONECT   20   19                                                            
CONECT   21   23   19   22   53                                             
CONECT   22   21   54                                                       
CONECT   23   21   25   24   55                                             
CONECT   24   25   23                                                       
CONECT   25   23   24   26   17                                             
CONECT   26   25   56   57   58                                             
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    1                                                            
CONECT   30    2                                                            
CONECT   31    2                                                            
CONECT   32    3                                                            
CONECT   33    4                                                            
CONECT   34    4                                                            
CONECT   35    4                                                            
CONECT   36    5                                                            
CONECT   37    6                                                            
CONECT   38    7                                                            
CONECT   39    9                                                            
CONECT   40    9                                                            
CONECT   41    9                                                            
CONECT   42   10                                                            
CONECT   43   10                                                            
CONECT   44   11                                                            
CONECT   45   12                                                            
CONECT   46   12                                                            
CONECT   47   12                                                            
CONECT   48   13                                                            
CONECT   49   14                                                            
CONECT   50   15                                                            
CONECT   51   16                                                            
CONECT   52   17                                                            
CONECT   53   21                                                            
CONECT   54   22                                                            
CONECT   55   23                                                            
CONECT   56   26                                                            
CONECT   57   26                                                            
CONECT   58   26                                                            
MASTER        0    0    0    0    0    0    0    0   58    0  118    0
END

RDKit          3D

58 59  0  0  0  0  0  0  0  0999 V2000
    2.8357   -1.1249    1.1511 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6076   -2.4394    0.4150 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6140   -3.3721    1.1319 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5563   -4.7270    0.4220 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2270   -2.7744    1.1848 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4167   -2.4821    2.3267 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7363   -1.8884    2.3420 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4482   -1.4980    3.4187 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9948   -1.6665    4.8501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8205   -0.8295    3.3240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3300   -0.3004    1.9583 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7574    0.2360    2.1114 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4464    0.8034    1.4140 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9366    0.7974    0.1725 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0304    1.8132   -0.3080 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4960    1.7768   -1.5389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4962    2.7347   -2.1378 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6762    1.9343   -2.4557 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6745    1.7440   -1.5578 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6125    0.9822   -1.7945 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5850    2.4932   -0.2227 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8650    2.6406    0.3883 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9633    3.8411   -0.3569 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1797    4.5055   -1.6101 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1407    3.9792   -1.3606 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1638    5.0652   -1.2466 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9255   -0.5188    1.1835 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6078   -0.5396    0.6418 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1698   -1.3032    2.1780 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5743   -2.9492    0.3182 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2625   -2.2232   -0.6041 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9820   -3.5486    2.1514 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8674   -5.4092    0.9327 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5441   -5.2003    0.4104 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2209   -4.6238   -0.6163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2456   -2.5721    0.2251 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0782   -2.6819    3.2714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1632   -1.7485    1.3520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7609   -2.1997    5.4237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8403   -0.6855    5.3118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0679   -2.2318    4.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8268    0.0135    4.0303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5539   -1.5525    3.7072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3716   -1.1371    1.2490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1482    0.5924    1.1516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4298   -0.5503    2.4713 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8013    1.0684    2.8229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2076    1.6140    2.1002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1806   -0.0207   -0.5031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7689    2.6015    0.3935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7738    0.9632   -2.2093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8940    3.0591   -3.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9813    1.8765    0.4515 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4135    1.9096    0.0383 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9563    4.4242    0.5519 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4686    5.4062   -2.2413 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0560    4.7190   -0.7178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7728    5.9318   -0.7022 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  7  2  0
 17 16  1  0
  7  6  1  0
 23 21  1  0
  6  5  2  0
 16 15  2  0
  5  3  1  0
 23 25  1  0
  3  2  1  0
 15 14  1  0
  2  1  1  0
 21 19  1  0
 25 24  1  0
 23 24  1  0
 14 13  2  0
 21 22  1  0
 19 18  1  0
 11 12  1  0
 13 11  1  0
 19 20  2  0
 18 17  1  0
 25 26  1  1
 11 10  1  0
  8  9  1  0
 17 25  1  0
  3  4  1  0
 10  8  1  0
 17 52  1  6
 23 55  1  1
 21 53  1  1
 16 51  1  0
 15 50  1  0
 14 49  1  0
 13 48  1  0
 11 44  1  6
 10 42  1  0
 10 43  1  0
  7 38  1  0
  6 37  1  0
  5 36  1  0
  3 32  1  1
  2 30  1  0
  2 31  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
 22 54  1  0
 12 45  1  0
 12 46  1  0
 12 47  1  0
 26 56  1  0
 26 57  1  0
 26 58  1  0
  9 39  1  0
  9 40  1  0
  9 41  1  0
  4 33  1  0
  4 34  1  0
  4 35  1  0
M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₂H₃₂O₄

Average Mass

360.4940 Da

Monoisotopic Mass

360.23006 Da

IUPAC Name

(1S,2S,5S,6R)-5-hydroxy-1-methyl-2-[(1E,3E,5R,7E,9E,11S)-5,7,11-trimethyltrideca-1,3,7,9-tetraen-1-yl]-3,7-dioxabicyclo[4.1.0]heptan-4-one

Traditional Name

(1S,2S,5S,6R)-5-hydroxy-1-methyl-2-[(1E,3E,5R,7E,9E,11S)-5,7,11-trimethyltrideca-1,3,7,9-tetraen-1-yl]-3,7-dioxabicyclo[4.1.0]heptan-4-one

CAS Registry Number

Not Available

SMILES

[H]O[C@]1([H])C(=O)O[C@@]([H])(C(\[H])=C(/[H])\C(\[H])=C(/[H])[C@]([H])(C([H])([H])[H])C([H])([H])C(=C(/[H])\C(\[H])=C(/[H])[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])\C([H])([H])[H])[C@@]2(O[C@]12[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C22H32O4/c1-6-15(2)11-9-12-17(4)14-16(3)10-7-8-13-18-22(5)20(26-22)19(23)21(24)25-18/h7-13,15-16,18-20,23H,6,14H2,1-5H3/b10-7+,11-9+,13-8+,17-12+/t15-,16-,18-,19-,20+,22-/m0/s1

InChI Key

NMEGHQQRWKBPQO-GQQMYULRSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 270 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 270 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CD₃Cl, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aspergillus niger FT-0554	JEOL database	Ui, H., et al, J. Antibiotics 54, 234 (2001)

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.28	ALOGPS
logP	4.68	ChemAxon
logS	-4.8	ALOGPS
pKa (Strongest Acidic)	11.64	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	59.06 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	107.19 m³·mol⁻¹	ChemAxon
Polarizability	41.18 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Ui, H., et al. (2001). Ui, H., et al, J. Antibiotics 54, 234 (2001). J. Antibiotics.

Showing NP-Card for Nafuredin (NP0025553)

MOL for NP0025553 (Nafuredin)

3D MOL for NP0025553 (Nafuredin)

3D SDF for NP0025553 (Nafuredin)

3D-SDF for NP0025553 (Nafuredin)

PDB for NP0025553 (Nafuredin)

3D PDB for NP0025553 (Nafuredin)

SMILES for NP0025553 (Nafuredin)

INCHI for NP0025553 (Nafuredin)

Structure for NP0025553 (Nafuredin)

3D Structure for NP0025553 (Nafuredin)