NP-MRD: Showing NP-Card for Haterumadioxin B (NP0025544)

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Record Information

Version

1.0

Created at

2021-06-19 17:38:25 UTC

Updated at

2021-06-29 23:50:34 UTC

NP-MRD ID

NP0025544

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Haterumadioxin B

Provided By

JEOL Database JEOL Logo

Description

2-[(3S,6R)-4,6-diethyl-6-[(2S)-2-ethylhexyl]-3,6-dihydro-1,2-dioxin-3-yl]acetic acid belongs to the class of organic compounds known as dialkyl peroxides. These are organic compounds containing a peroxide group substituted by two alkyl groups. Haterumadioxin B is found in Plakortis lita. It was first documented in 2001 (Takada, N., et al.). Based on a literature review very few articles have been published on 2-[(3S,6R)-4,6-diethyl-6-[(2S)-2-ethylhexyl]-3,6-dihydro-1,2-dioxin-3-yl]acetic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306192119383D          

 54 54  0  0  0  0            999 V2000
   -0.6756    3.5521    0.5152 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0119    3.4217   -0.9627 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7060    2.0357   -1.5386 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7969    1.7526   -1.6547 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1671    0.3545   -2.2055 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6015    0.1789   -3.6364 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2553   -0.9538   -4.4187 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7474   -0.8306   -1.2924 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3955   -0.9218    0.1171 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9416   -0.8309    0.0931 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6654   -1.8452   -0.7842 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9661   -2.2169    0.8011 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1095   -2.2462    1.8442 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1883   -3.5364    2.5694 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2736   -3.5099    4.0200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5485   -0.9505    2.3080 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0408   -1.0802    2.6009 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5429    0.1894    3.2226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9995    0.8370    4.1017 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7521    0.5549    2.7541 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4448    0.0052    1.2329 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.9819    4.5365    0.8834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3980    3.4505    0.6966 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.2600    0.3442   -2.2986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4804    0.0052   -3.6008 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.9533    1.3850    3.2352 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  2  0  0  0  0
  9 22  1  0  0  0  0
 22 21  1  0  0  0  0
 21 16  1  0  0  0  0
 16 13  1  0  0  0  0
  1  2  1  0  0  0  0
  5  6  1  0  0  0  0
 13 14  1  0  0  0  0
  6  7  1  0  0  0  0
 12  9  1  0  0  0  0
  9 10  1  6  0  0  0
  3  4  1  0  0  0  0
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  4  5  1  0  0  0  0
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 18 20  1  0  0  0  0
  8  9  1  0  0  0  0
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  8 38  1  0  0  0  0
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 12 45  1  0  0  0  0
 16 51  1  1  0  0  0
  6 33  1  0  0  0  0
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 20 54  1  0  0  0  0
M  END

     RDKit          3D

 54 54  0  0  0  0  0  0  0  0999 V2000
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   -2.5429    0.1894    3.2226 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.7521    0.5549    2.7541 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9806    0.1770    0.9595 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2002    2.7944    1.1055 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652306192119383D          

 54 54  0  0  0  0            999 V2000
   -0.6756    3.5521    0.5152 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0119    3.4217   -0.9627 C   0  0  2  0  0  0  0  0  0  0  0  0
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    0.7969    1.7526   -1.6547 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1671    0.3545   -2.2055 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6015    0.1789   -3.6364 C   0  0  1  0  0  0  0  0  0  0  0  0
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    3.3226   -0.9267    1.1199 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2428    0.1791   -0.2135 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7454   -1.6697   -0.7360 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4870   -2.8713   -0.4516 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3669   -1.7644   -1.8327 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4073   -3.1402    0.4375 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3091   -4.3775    2.0698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2601   -3.7567    2.5200 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3487   -3.3120    4.0881 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2517   -2.7429    4.5977 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0778   -4.4770    4.4943 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0075   -0.5587    3.1782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2684   -1.8849    3.3061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5938   -1.2639    1.6715 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9533    1.3850    3.2352 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  2  0  0  0  0
  9 22  1  0  0  0  0
 22 21  1  0  0  0  0
 21 16  1  0  0  0  0
 16 13  1  0  0  0  0
  1  2  1  0  0  0  0
  5  6  1  0  0  0  0
 13 14  1  0  0  0  0
  6  7  1  0  0  0  0
 12  9  1  0  0  0  0
  9 10  1  6  0  0  0
  3  4  1  0  0  0  0
 10 11  1  0  0  0  0
 16 17  1  0  0  0  0
  4  5  1  0  0  0  0
 17 18  1  0  0  0  0
  2  3  1  0  0  0  0
 14 15  1  0  0  0  0
  5  8  1  0  0  0  0
 18 20  1  0  0  0  0
  8  9  1  0  0  0  0
 18 19  2  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  2 26  1  0  0  0  0
  2 27  1  0  0  0  0
  3 28  1  0  0  0  0
  3 29  1  0  0  0  0
  4 30  1  0  0  0  0
  4 31  1  0  0  0  0
  5 32  1  6  0  0  0
  8 38  1  0  0  0  0
  8 39  1  0  0  0  0
 14 46  1  0  0  0  0
 14 47  1  0  0  0  0
 12 45  1  0  0  0  0
 16 51  1  1  0  0  0
  6 33  1  0  0  0  0
  6 34  1  0  0  0  0
  7 35  1  0  0  0  0
  7 36  1  0  0  0  0
  7 37  1  0  0  0  0
 10 40  1  0  0  0  0
 10 41  1  0  0  0  0
 11 42  1  0  0  0  0
 11 43  1  0  0  0  0
 11 44  1  0  0  0  0
 17 52  1  0  0  0  0
 17 53  1  0  0  0  0
 15 48  1  0  0  0  0
 15 49  1  0  0  0  0
 15 50  1  0  0  0  0
 20 54  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0025544

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C([H])([H])[C@]1([H])OO[C@](C([H])=C1C([H])([H])C([H])([H])[H])(C([H])([H])C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C18H32O4/c1-5-9-10-14(6-2)12-18(8-4)13-15(7-3)16(21-22-18)11-17(19)20/h13-14,16H,5-12H2,1-4H3,(H,19,20)/t14-,16-,18+/m0/s1

> <INCHI_KEY>
CRQZQZVUKMYCRH-QILLFSRXSA-N

> <FORMULA>
C18H32O4

> <MOLECULAR_WEIGHT>
312.45

> <EXACT_MASS>
312.23005951

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
36.29882676733663

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(3S,6R)-4,6-diethyl-6-[(2S)-2-ethylhexyl]-3,6-dihydro-1,2-dioxin-3-yl]acetic acid

> <ALOGPS_LOGP>
5.28

> <JCHEM_LOGP>
5.379161717000001

> <ALOGPS_LOGS>
-4.15

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.4568345160487475

> <JCHEM_PKA_STRONGEST_BASIC>
-4.870426415958417

> <JCHEM_POLAR_SURFACE_AREA>
55.760000000000005

> <JCHEM_REFRACTIVITY>
87.4392

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.20e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(3S,6R)-4,6-diethyl-6-[(2S)-2-ethylhexyl]-3H-1,2-dioxin-3-yl]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 54 54  0  0  0  0  0  0  0  0999 V2000
   -0.6756    3.5521    0.5152 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0119    3.4217   -0.9627 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7060    2.0357   -1.5386 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7969    1.7526   -1.6547 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1671    0.3545   -2.2055 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6015    0.1789   -3.6364 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2553   -0.9538   -4.4187 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7474   -0.8306   -1.2924 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3955   -0.9218    0.1171 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9416   -0.8309    0.0931 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6654   -1.8452   -0.7842 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9661   -2.2169    0.8011 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1095   -2.2462    1.8442 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1883   -3.5364    2.5694 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2736   -3.5099    4.0200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5485   -0.9505    2.3080 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0408   -1.0802    2.6009 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5429    0.1894    3.2226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9995    0.8370    4.1017 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7521    0.5549    2.7541 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4448    0.0052    1.2329 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9806    0.1770    0.9595 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2002    2.7944    1.1055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9819    4.5365    0.8834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3980    3.4505    0.6966 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4766    4.1911   -1.5309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0827    3.6212   -1.0904 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1596    1.9850   -2.5352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2029    1.2753   -0.9295 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2919    1.9042   -0.6923 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2350    2.5085   -2.3208 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2600    0.3442   -2.2986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4804    0.0052   -3.6008 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7578    1.1051   -4.2033 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0189   -1.9327   -3.9935 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3434   -0.8386   -4.4426 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8934   -0.9502   -5.4522 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9720   -1.7677   -1.8159 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3454   -0.8146   -1.1915 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3226   -0.9267    1.1199 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2428    0.1791   -0.2135 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7454   -1.6697   -0.7360 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4870   -2.8713   -0.4516 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3669   -1.7644   -1.8327 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4073   -3.1402    0.4375 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3091   -4.3775    2.0698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2601   -3.7567    2.5200 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3487   -3.3120    4.0881 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2517   -2.7429    4.5977 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0778   -4.4770    4.4943 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0075   -0.5587    3.1782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2684   -1.8849    3.3061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5938   -1.2639    1.6715 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9533    1.3850    3.2352 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  2  0
  9 22  1  0
 22 21  1  0
 21 16  1  0
 16 13  1  0
  1  2  1  0
  5  6  1  0
 13 14  1  0
  6  7  1  0
 12  9  1  0
  9 10  1  6
  3  4  1  0
 10 11  1  0
 16 17  1  0
  4  5  1  0
 17 18  1  0
  2  3  1  0
 14 15  1  0
  5  8  1  0
 18 20  1  0
  8  9  1  0
 18 19  2  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  2 26  1  0
  2 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  6
  8 38  1  0
  8 39  1  0
 14 46  1  0
 14 47  1  0
 12 45  1  0
 16 51  1  1
  6 33  1  0
  6 34  1  0
  7 35  1  0
  7 36  1  0
  7 37  1  0
 10 40  1  0
 10 41  1  0
 11 42  1  0
 11 43  1  0
 11 44  1  0
 17 52  1  0
 17 53  1  0
 15 48  1  0
 15 49  1  0
 15 50  1  0
 20 54  1  0
M  END

HEADER    PROTEIN                                 19-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-JUN-21         0                                  
HETATM    1  C   UNK     0      -0.676   3.552   0.515  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.012   3.422  -0.963  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.706   2.036  -1.539  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.797   1.753  -1.655  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.167   0.355  -2.205  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.602   0.179  -3.636  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.255  -0.954  -4.419  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.747  -0.831  -1.292  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.395  -0.922   0.117  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.942  -0.831   0.093  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.665  -1.845  -0.784  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.966  -2.217   0.801  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.110  -2.246   1.844  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.188  -3.536   2.569  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.274  -3.510   4.020  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.549  -0.951   2.308  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.041  -1.080   2.601  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.543   0.189   3.223  0.00  0.00           C+0
HETATM   19  O   UNK     0      -2.000   0.837   4.102  0.00  0.00           O+0
HETATM   20  O   UNK     0      -3.752   0.555   2.754  0.00  0.00           O+0
HETATM   21  O   UNK     0      -0.445   0.005   1.233  0.00  0.00           O+0
HETATM   22  O   UNK     0       0.981   0.177   0.960  0.00  0.00           O+0
HETATM   23  H   UNK     0      -1.200   2.794   1.105  0.00  0.00           H+0
HETATM   24  H   UNK     0      -0.982   4.537   0.883  0.00  0.00           H+0
HETATM   25  H   UNK     0       0.398   3.450   0.697  0.00  0.00           H+0
HETATM   26  H   UNK     0      -0.477   4.191  -1.531  0.00  0.00           H+0
HETATM   27  H   UNK     0      -2.083   3.621  -1.090  0.00  0.00           H+0
HETATM   28  H   UNK     0      -1.160   1.985  -2.535  0.00  0.00           H+0
HETATM   29  H   UNK     0      -1.203   1.275  -0.930  0.00  0.00           H+0
HETATM   30  H   UNK     0       1.292   1.904  -0.692  0.00  0.00           H+0
HETATM   31  H   UNK     0       1.235   2.509  -2.321  0.00  0.00           H+0
HETATM   32  H   UNK     0       2.260   0.344  -2.299  0.00  0.00           H+0
HETATM   33  H   UNK     0      -0.480   0.005  -3.601  0.00  0.00           H+0
HETATM   34  H   UNK     0       0.758   1.105  -4.203  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.019  -1.933  -3.994  0.00  0.00           H+0
HETATM   36  H   UNK     0       2.343  -0.839  -4.443  0.00  0.00           H+0
HETATM   37  H   UNK     0       0.893  -0.950  -5.452  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.972  -1.768  -1.816  0.00  0.00           H+0
HETATM   39  H   UNK     0      -0.345  -0.815  -1.192  0.00  0.00           H+0
HETATM   40  H   UNK     0       3.323  -0.927   1.120  0.00  0.00           H+0
HETATM   41  H   UNK     0       3.243   0.179  -0.214  0.00  0.00           H+0
HETATM   42  H   UNK     0       4.745  -1.670  -0.736  0.00  0.00           H+0
HETATM   43  H   UNK     0       3.487  -2.871  -0.452  0.00  0.00           H+0
HETATM   44  H   UNK     0       3.367  -1.764  -1.833  0.00  0.00           H+0
HETATM   45  H   UNK     0       1.407  -3.140   0.438  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.309  -4.378   2.070  0.00  0.00           H+0
HETATM   47  H   UNK     0      -1.260  -3.757   2.520  0.00  0.00           H+0
HETATM   48  H   UNK     0       1.349  -3.312   4.088  0.00  0.00           H+0
HETATM   49  H   UNK     0      -0.252  -2.743   4.598  0.00  0.00           H+0
HETATM   50  H   UNK     0       0.078  -4.477   4.494  0.00  0.00           H+0
HETATM   51  H   UNK     0      -0.008  -0.559   3.178  0.00  0.00           H+0
HETATM   52  H   UNK     0      -2.268  -1.885   3.306  0.00  0.00           H+0
HETATM   53  H   UNK     0      -2.594  -1.264   1.672  0.00  0.00           H+0
HETATM   54  H   UNK     0      -3.953   1.385   3.235  0.00  0.00           H+0
CONECT    1    2   23   24   25                                             
CONECT    2    1    3   26   27                                             
CONECT    3    4    2   28   29                                             
CONECT    4    3    5   30   31                                             
CONECT    5    6    4    8   32                                             
CONECT    6    5    7   33   34                                             
CONECT    7    6   35   36   37                                             
CONECT    8    5    9   38   39                                             
CONECT    9   22   12   10    8                                             
CONECT   10    9   11   40   41                                             
CONECT   11   10   42   43   44                                             
CONECT   12   13    9   45                                                  
CONECT   13   12   16   14                                                  
CONECT   14   13   15   46   47                                             
CONECT   15   14   48   49   50                                             
CONECT   16   21   13   17   51                                             
CONECT   17   16   18   52   53                                             
CONECT   18   17   20   19                                                  
CONECT   19   18                                                            
CONECT   20   18   54                                                       
CONECT   21   22   16                                                       
CONECT   22    9   21                                                       
CONECT   23    1                                                            
CONECT   24    1                                                            
CONECT   25    1                                                            
CONECT   26    2                                                            
CONECT   27    2                                                            
CONECT   28    3                                                            
CONECT   29    3                                                            
CONECT   30    4                                                            
CONECT   31    4                                                            
CONECT   32    5                                                            
CONECT   33    6                                                            
CONECT   34    6                                                            
CONECT   35    7                                                            
CONECT   36    7                                                            
CONECT   37    7                                                            
CONECT   38    8                                                            
CONECT   39    8                                                            
CONECT   40   10                                                            
CONECT   41   10                                                            
CONECT   42   11                                                            
CONECT   43   11                                                            
CONECT   44   11                                                            
CONECT   45   12                                                            
CONECT   46   14                                                            
CONECT   47   14                                                            
CONECT   48   15                                                            
CONECT   49   15                                                            
CONECT   50   15                                                            
CONECT   51   16                                                            
CONECT   52   17                                                            
CONECT   53   17                                                            
CONECT   54   20                                                            
MASTER        0    0    0    0    0    0    0    0   54    0  108    0
END

RDKit          3D

54 54  0  0  0  0  0  0  0  0999 V2000
   -0.6756    3.5521    0.5152 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0119    3.4217   -0.9627 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7060    2.0357   -1.5386 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7969    1.7526   -1.6547 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1671    0.3545   -2.2055 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6015    0.1789   -3.6364 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2553   -0.9538   -4.4187 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7474   -0.8306   -1.2924 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3955   -0.9218    0.1171 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9416   -0.8309    0.0931 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6654   -1.8452   -0.7842 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9661   -2.2169    0.8011 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1095   -2.2462    1.8442 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1883   -3.5364    2.5694 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2736   -3.5099    4.0200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5485   -0.9505    2.3080 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0408   -1.0802    2.6009 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5429    0.1894    3.2226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9995    0.8370    4.1017 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7521    0.5549    2.7541 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4448    0.0052    1.2329 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9806    0.1770    0.9595 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2002    2.7944    1.1055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9819    4.5365    0.8834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3980    3.4505    0.6966 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4766    4.1911   -1.5309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0827    3.6212   -1.0904 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1596    1.9850   -2.5352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2029    1.2753   -0.9295 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2919    1.9042   -0.6923 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2350    2.5085   -2.3208 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2600    0.3442   -2.2986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4804    0.0052   -3.6008 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7578    1.1051   -4.2033 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0189   -1.9327   -3.9935 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3434   -0.8386   -4.4426 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8934   -0.9502   -5.4522 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9720   -1.7677   -1.8159 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3454   -0.8146   -1.1915 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3226   -0.9267    1.1199 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2428    0.1791   -0.2135 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7454   -1.6697   -0.7360 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4870   -2.8713   -0.4516 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3669   -1.7644   -1.8327 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4073   -3.1402    0.4375 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3091   -4.3775    2.0698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2601   -3.7567    2.5200 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3487   -3.3120    4.0881 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2517   -2.7429    4.5977 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0778   -4.4770    4.4943 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0075   -0.5587    3.1782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2684   -1.8849    3.3061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5938   -1.2639    1.6715 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9533    1.3850    3.2352 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  2  0
  9 22  1  0
 22 21  1  0
 21 16  1  0
 16 13  1  0
  1  2  1  0
  5  6  1  0
 13 14  1  0
  6  7  1  0
 12  9  1  0
  9 10  1  6
  3  4  1  0
 10 11  1  0
 16 17  1  0
  4  5  1  0
 17 18  1  0
  2  3  1  0
 14 15  1  0
  5  8  1  0
 18 20  1  0
  8  9  1  0
 18 19  2  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  2 26  1  0
  2 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  6
  8 38  1  0
  8 39  1  0
 14 46  1  0
 14 47  1  0
 12 45  1  0
 16 51  1  1
  6 33  1  0
  6 34  1  0
  7 35  1  0
  7 36  1  0
  7 37  1  0
 10 40  1  0
 10 41  1  0
 11 42  1  0
 11 43  1  0
 11 44  1  0
 17 52  1  0
 17 53  1  0
 15 48  1  0
 15 49  1  0
 15 50  1  0
 20 54  1  0
M  END

View in JSmol

Synonyms

Value	Source
2-[(3S,6R)-4,6-Diethyl-6-[(2S)-2-ethylhexyl]-3,6-dihydro-1,2-dioxin-3-yl]acetate	Generator

Chemical Formula

C₁₈H₃₂O₄

Average Mass

312.4500 Da

Monoisotopic Mass

312.23006 Da

IUPAC Name

2-[(3S,6R)-4,6-diethyl-6-[(2S)-2-ethylhexyl]-3,6-dihydro-1,2-dioxin-3-yl]acetic acid

Traditional Name

[(3S,6R)-4,6-diethyl-6-[(2S)-2-ethylhexyl]-3H-1,2-dioxin-3-yl]acetic acid

CAS Registry Number

Not Available

SMILES

[H]OC(=O)C([H])([H])[C@]1([H])OO[C@](C([H])=C1C([H])([H])C([H])([H])[H])(C([H])([H])C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H]

InChI Identifier

InChI=1S/C18H32O4/c1-5-9-10-14(6-2)12-18(8-4)13-15(7-3)16(21-22-18)11-17(19)20/h13-14,16H,5-12H2,1-4H3,(H,19,20)/t14-,16-,18+/m0/s1

InChI Key

CRQZQZVUKMYCRH-QILLFSRXSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Plakortis lita	JEOL database	Takada, N., et al, J. Nat. Prod. 64, 356 (2001)

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dialkyl peroxides. These are organic compounds containing a peroxide group substituted by two alkyl groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organic oxides

Sub Class

Organic peroxides

Direct Parent

Dialkyl peroxides

Alternative Parents

Substituents

Dialkyl peroxide
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.28	ALOGPS
logP	5.38	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	4.46	ChemAxon
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	55.76 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	87.44 m³·mol⁻¹	ChemAxon
Polarizability	36.3 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

24717306

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44584773

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Takada, N., et al. (2001). Takada, N., et al, J. Nat. Prod. 64, 356 (2001). J. Nat. Prod..

Showing NP-Card for Haterumadioxin B (NP0025544)

MOL for NP0025544 (Haterumadioxin B)

3D MOL for NP0025544 (Haterumadioxin B)

3D SDF for NP0025544 (Haterumadioxin B)

3D-SDF for NP0025544 (Haterumadioxin B)

PDB for NP0025544 (Haterumadioxin B)

3D PDB for NP0025544 (Haterumadioxin B)

SMILES for NP0025544 (Haterumadioxin B)

INCHI for NP0025544 (Haterumadioxin B)

Structure for NP0025544 (Haterumadioxin B)

3D Structure for NP0025544 (Haterumadioxin B)