Np mrd loader

Record Information
Version1.0
Created at2021-06-19 17:34:09 UTC
Updated at2021-06-29 23:50:24 UTC
NP-MRD IDNP0025442
Secondary Accession NumbersNone
Natural Product Identification
Common NameMersinine A
Provided ByJEOL DatabaseJEOL Logo
Description11,12,16-Trimethyl (1R,12R,13R,16R,23R)-12-hydroxy-6,8-dioxa-11,20-diazahexacyclo[14.6.1.0¹,¹³.0²,¹⁰.0⁵,⁹.0²⁰,²³]Tricosa-2(10),3,5(9),17-tetraene-11,12,16-tricarboxylate belongs to the class of organic compounds known as melodinus alkaloids. These are alkaloids with a structure that is based on the melodinus skeleton. This backbone is a pentacyclic structure that contains a tetrahydroquinoline and an indolizine joined to each other through a cyclopentane. Mersinine A is found in Kopsia. It was first documented in 2001 (Kam, T.-S., et al.). Based on a literature review very few articles have been published on 11,12,16-trimethyl (1R,12R,13R,16R,23R)-12-hydroxy-6,8-dioxa-11,20-diazahexacyclo[14.6.1.0¹,¹³.0²,¹⁰.0⁵,⁹.0²⁰,²³]Tricosa-2(10),3,5(9),17-tetraene-11,12,16-tricarboxylate.
Structure
Thumb
Synonyms
ValueSource
11,12,16-Trimethyl (1R,12R,13R,16R,23R)-12-hydroxy-6,8-dioxa-11,20-diazahexacyclo[14.6.1.0,.0,.0,.0,]tricosa-2(10),3,5(9),17-tetraene-11,12,16-tricarboxylic acidGenerator
Chemical FormulaC25H28N2O9
Average Mass500.5040 Da
Monoisotopic Mass500.17948 Da
IUPAC Name11,12,16-trimethyl (1R,12R,13R,16R,23R)-12-hydroxy-6,8-dioxa-11,20-diazahexacyclo[14.6.1.0^{1,13}.0^{2,10}.0^{5,9}.0^{20,23}]tricosa-2,4,9,17-tetraene-11,12,16-tricarboxylate
Traditional Name11,12,16-trimethyl (1R,12R,13R,16R,23R)-12-hydroxy-6,8-dioxa-11,20-diazahexacyclo[14.6.1.0^{1,13}.0^{2,10}.0^{5,9}.0^{20,23}]tricosa-2,4,9,17-tetraene-11,12,16-tricarboxylate
CAS Registry NumberNot Available
SMILES
[H]O[C@@]1(N(C(=O)OC([H])([H])[H])C2=C3OC([H])([H])OC3=C([H])C([H])=C2[C@@]23C([H])([H])C([H])([H])N4C([H])([H])C([H])=C([H])[C@](C(=O)OC([H])([H])[H])(C([H])([H])C([H])([H])[C@@]12[H])[C@@]34[H])C(=O)OC([H])([H])[H]
InChI Identifier
InChI=1S/C25H28N2O9/c1-32-20(28)23-8-4-11-26-12-10-24(19(23)26)14-5-6-15-18(36-13-35-15)17(14)27(22(30)34-3)25(31,21(29)33-2)16(24)7-9-23/h4-6,8,16,19,31H,7,9-13H2,1-3H3/t16-,19+,23+,24+,25-/m1/s1
InChI KeyWTHKQEVBLOSRDI-QYJDRXKLSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, CDCl3, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
KopsiaJEOL database
    • Kam, T.-S., et al, Tetrahedron Letts. 42, 5977 (2001)
Chemical Taxonomy
Description Belongs to the class of organic compounds known as melodinus alkaloids. These are alkaloids with a structure that is based on the melodinus skeleton. This backbone is a pentacyclic structure that contains a tetrahydroquinoline and an indolizine joined to each other through a cyclopentane.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassMelodinus alkaloids
Sub ClassNot Available
Direct ParentMelodinus alkaloids
Alternative Parents
Substituents
  • Melodinus skeleton
  • 1,8-phenanthroline
  • Phenanthridine
  • Benzoquinoline
  • Alpha-amino acid ester
  • Quinoline
  • Tetrahydroquinoline
  • Alpha-amino acid or derivatives
  • Indole or derivatives
  • Benzodioxole
  • Aralkylamine
  • Benzenoid
  • N-alkylpyrrolidine
  • Dicarboxylic acid or derivatives
  • Methyl ester
  • Carbamic acid ester
  • Pyrrolidine
  • Tertiary aliphatic amine
  • Tertiary amine
  • Carbonic acid derivative
  • Carboxylic acid ester
  • Amino acid or derivatives
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Alkanolamine
  • Acetal
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.34ALOGPS
logP1.71ChemAxon
logS-2.6ALOGPS
pKa (Strongest Acidic)10.35ChemAxon
pKa (Strongest Basic)8.34ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area124.07 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity123.13 m³·mol⁻¹ChemAxon
Polarizability49.8 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID21174993
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound15511595
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Kam, T.-S., et al. (2001). Kam, T.-S., et al, Tetrahedron Letts. 42, 5977 (2001). Tetrahedron Lett.