Np mrd loader

Record Information
Version1.0
Created at2021-01-06 08:11:00 UTC
Updated at2021-07-15 17:40:42 UTC
NP-MRD IDNP0023052
Secondary Accession NumbersNone
Natural Product Identification
Common NameEsperamicin A2c
Provided ByNPAtlasNPAtlas Logo
Description Esperamicin A2c is found in Actinomadura and Actinomadura verrucosospora. It was first documented in 1995 (PMID: 8557609). Based on a literature review very few articles have been published on Esperamicin A2c.
Structure
Thumb
Synonyms
ValueSource
N-[2-({[(2S,3S,4S,6S)-4-hydroxy-6-{[(13Z)-9-hydroxy-12-{[hydroxy(methoxy)methylidene]amino}-2-{[(2S,3S,4R,5R,6S)-4-hydroxy-5-({[(2R,4R,5R,6S)-4-hydroxy-6-methyl-5-(methylsulfanyl)oxan-2-yl]oxy}amino)-3-{[(2S,4S,5S)-4-methoxy-5-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-13-{2-[(methylsulfanyl)disulfanyl]ethylidene}-11-oxobicyclo[7.3.1]trideca-1(12),5-dien-3,7-diyn-10-yl]oxy}-2-methyloxan-3-yl]oxy}carbonyl)-4,5-dimethoxyphenyl]-2-methoxyprop-2-enimidateGenerator
N-[2-({[(2S,3S,4S,6S)-4-hydroxy-6-{[(13Z)-9-hydroxy-12-{[hydroxy(methoxy)methylidene]amino}-2-{[(2S,3S,4R,5R,6S)-4-hydroxy-5-({[(2R,4R,5R,6S)-4-hydroxy-6-methyl-5-(methylsulphanyl)oxan-2-yl]oxy}amino)-3-{[(2S,4S,5S)-4-methoxy-5-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-13-{2-[(methylsulphanyl)disulphanyl]ethylidene}-11-oxobicyclo[7.3.1]trideca-1(12),5-dien-3,7-diyn-10-yl]oxy}-2-methyloxan-3-yl]oxy}carbonyl)-4,5-dimethoxyphenyl]-2-methoxyprop-2-enimidateGenerator
N-[2-({[(2S,3S,4S,6S)-4-hydroxy-6-{[(13Z)-9-hydroxy-12-{[hydroxy(methoxy)methylidene]amino}-2-{[(2S,3S,4R,5R,6S)-4-hydroxy-5-({[(2R,4R,5R,6S)-4-hydroxy-6-methyl-5-(methylsulphanyl)oxan-2-yl]oxy}amino)-3-{[(2S,4S,5S)-4-methoxy-5-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-13-{2-[(methylsulphanyl)disulphanyl]ethylidene}-11-oxobicyclo[7.3.1]trideca-1(12),5-dien-3,7-diyn-10-yl]oxy}-2-methyloxan-3-yl]oxy}carbonyl)-4,5-dimethoxyphenyl]-2-methoxyprop-2-enimidic acidGenerator
Chemical FormulaC57H76N4O22S4
Average Mass1297.4800 Da
Monoisotopic Mass1296.38340 Da
IUPAC Name(2S,3S,4S,6S)-4-hydroxy-6-{[(2S,5Z,9R,10R,13Z)-9-hydroxy-2-{[(2S,3S,4R,5R,6S)-4-hydroxy-5-({[(2R,4R,5R,6S)-4-hydroxy-6-methyl-5-(methylsulfanyl)oxan-2-yl]oxy}amino)-3-{[(2S,4S,5S)-4-methoxy-5-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-12-[(methoxycarbonyl)amino]-13-{2-[(methylsulfanyl)disulfanyl]ethylidene}-11-oxobicyclo[7.3.1]trideca-1(12),5-dien-3,7-diyn-10-yl]oxy}-2-methyloxan-3-yl 4,5-dimethoxy-2-(2-methoxyprop-2-enamido)benzoate
Traditional Name(2S,3S,4S,6S)-4-hydroxy-6-{[(2S,5Z,9R,10R,13Z)-9-hydroxy-2-{[(2S,3S,4R,5R,6S)-4-hydroxy-5-({[(2R,4R,5R,6S)-4-hydroxy-6-methyl-5-(methylsulfanyl)oxan-2-yl]oxy}amino)-3-{[(2S,4S,5S)-4-methoxy-5-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-12-[(methoxycarbonyl)amino]-13-{2-[(methylsulfanyl)disulfanyl]ethylidene}-11-oxobicyclo[7.3.1]trideca-1(12),5-dien-3,7-diyn-10-yl]oxy}-2-methyloxan-3-yl 4,5-dimethoxy-2-(2-methoxyprop-2-enamido)benzoate
CAS Registry NumberNot Available
SMILES
CN[C@H]1CO[C@H](C[C@@H]1OC)O[C@H]1[C@H](O)[C@@H](NO[C@@H]2C[C@@H](O)[C@@H](SC)[C@H](C)O2)[C@H](C)O[C@@H]1OC1C#C\C=C/C#CC2(O)C(O[C@H]3C[C@H](O)[C@H](OC(=O)C4=CC(OC)=C(OC)C=C4NC(=O)C(=C)OC)[C@H](C)O3)C(=O)C(NC(=O)OC)=C1\C2=C\CSSSC
InChI Identifier
InChI=1S/C57H76N4O22S4/c1-27-45(61-83-43-24-36(63)51(84-11)29(3)77-43)47(64)50(80-41-25-38(71-7)34(58-5)26-75-41)55(78-27)79-37-17-15-13-14-16-19-57(69)32(18-20-86-87-85-12)44(37)46(60-56(68)74-10)48(65)52(57)81-42-23-35(62)49(28(2)76-42)82-54(67)31-21-39(72-8)40(73-9)22-33(31)59-53(66)30(4)70-6/h13-14,18,21-22,27-29,34-38,41-43,45,47,49-52,55,58,61-64,69H,4,20,23-26H2,1-3,5-12H3,(H,59,66)(H,60,68)/b14-13-,32-18-/t27-,28-,29-,34-,35-,36+,37?,38-,41-,42-,43+,45-,47+,49+,50-,51-,52?,55+,57?/m0/s1
InChI KeyHPRFQGMNEDASPB-NXRLQSARSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
ActinomaduraNPAtlas
Actinomadura verrucososporaLOTUS Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.44ALOGPS
logP4.57ChemAxon
logS-4.7ALOGPS
pKa (Strongest Acidic)10.94ChemAxon
pKa (Strongest Basic)9.17ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count22ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area326.54 ŲChemAxon
Rotatable Bond Count26ChemAxon
Refractivity333.41 m³·mol⁻¹ChemAxon
Polarizability134.17 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA020586
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139588881
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Lam KS, Veitch JA, Golik J, Rose WC, Doyle TW, Forenza S: Production and isolation of two novel esperamicins in a chemically defined medium. J Antibiot (Tokyo). 1995 Dec;48(12):1497-501. doi: 10.7164/antibiotics.48.1497. [PubMed:8557609 ]