Np mrd loader

Record Information
Version1.0
Created at2021-01-06 07:12:23 UTC
Updated at2021-07-15 17:37:47 UTC
NP-MRD IDNP0021968
Secondary Accession NumbersNone
Natural Product Identification
Common NameDecilorubicin
Provided ByNPAtlasNPAtlas Logo
Description Decilorubicin is found in Streptomyces and Streptomyces virginiae. It was first documented in 1983 (PMID: 6853375). Based on a literature review very few articles have been published on 4-{[(2R,3S,4R,6S)-6-{[(2S,3S,4R,6S)-6-{[(2R,3R,4S,6S)-6-{[(1S,10S,12R,21S,22S,23S,24R)-23-(dimethylamino)-10-{[(2R,4R,5R,6R)-4-(dimethylamino)-5-hydroxy-6-methyloxan-2-yl]oxy}-8,12,15,22-tetrahydroxy-1,12-dimethyl-6,17-dioxo-20,25-dioxahexacyclo[19.3.1.0²,¹⁹.0⁵,¹⁸.0⁷,¹⁶.0⁹,¹⁴]Pentacosa-2(19),3,5(18),7(16),8,14-hexaen-24-yl]oxy}-2,4-dimethyl-4-nitrooxan-3-yl]oxy}-2,4-dimethyl-4-nitrooxan-3-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-oxobutanoic acid.
Structure
Thumb
Synonyms
ValueSource
4-{[(2R,3S,4R,6S)-6-{[(2S,3S,4R,6S)-6-{[(2R,3R,4S,6S)-6-{[(1S,10S,12R,21S,22S,23S,24R)-23-(dimethylamino)-10-{[(2R,4R,5R,6R)-4-(dimethylamino)-5-hydroxy-6-methyloxan-2-yl]oxy}-8,12,15,22-tetrahydroxy-1,12-dimethyl-6,17-dioxo-20,25-dioxahexacyclo[19.3.1.0,.0,.0,.0,]pentacosa-2(19),3,5(18),7(16),8,14-hexaen-24-yl]oxy}-2,4-dimethyl-4-nitrooxan-3-yl]oxy}-2,4-dimethyl-4-nitrooxan-3-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-oxobutanoateGenerator
Chemical FormulaC60H82N4O26
Average Mass1275.3180 Da
Monoisotopic Mass1274.52173 Da
IUPAC Name{[(2S,3S,4R,6S)-3-{[(2S,4R,5S,6R)-5-[(3-carboxypropanoyl)oxy]-4-methoxy-6-methyloxan-2-yl]oxy}-6-{[(2R,3R,4S,6S)-6-{[(1S,10S,12R,21S,22S,23S,24R)-23-(dimethylamino)-10-{[(2R,4R,5R,6R)-4-(dimethylamino)-5-hydroxy-6-methyloxan-2-yl]oxy}-8,12,15,22-tetrahydroxy-1,12-dimethyl-6,17-dioxo-20,25-dioxahexacyclo[19.3.1.0^{2,19}.0^{5,18}.0^{7,16}.0^{9,14}]pentacosa-2(19),3,5(18),7,9(14),15-hexaen-24-yl]oxy}-2,4-dimethyl-4-nitrooxan-3-yl]oxy}-2,4-dimethyloxan-4-yl]nitro}-lambda1-oxidanyl
Traditional Name[(2S,3S,4R,6S)-3-{[(2S,4R,5S,6R)-5-[(3-carboxypropanoyl)oxy]-4-methoxy-6-methyloxan-2-yl]oxy}-6-{[(2R,3R,4S,6S)-6-{[(1S,10S,12R,21S,22S,23S,24R)-23-(dimethylamino)-10-{[(2R,4R,5R,6R)-4-(dimethylamino)-5-hydroxy-6-methyloxan-2-yl]oxy}-8,12,15,22-tetrahydroxy-1,12-dimethyl-6,17-dioxo-20,25-dioxahexacyclo[19.3.1.0^{2,19}.0^{5,18}.0^{7,16}.0^{9,14}]pentacosa-2(19),3,5(18),7,9(14),15-hexaen-24-yl]oxy}-2,4-dimethyl-4-nitrooxan-3-yl]oxy}-2,4-dimethyloxan-4-ylnitro]-lambda1-oxidanyl
CAS Registry NumberNot Available
SMILES
CO[C@@H]1C[C@H](O[C@@H]2[C@H](C)O[C@H](C[C@@]2(C)[N+]([O-])=O)O[C@H]2[C@@H](C)O[C@H](C[C@]2(C)[N+]([O-])=O)O[C@@H]2[C@H]([C@H](O)[C@H]3OC4=C(C=CC5=C4C(=O)C4=C(C(O)=C6[C@H](C[C@](C)(O)CC6=C4O)O[C@H]4C[C@H]([C@@H](O)[C@@H](C)O4)N(C)C)C5=O)[C@]2(C)O3)N(C)C)O[C@H](C)[C@@H]1OC(=O)CCC(O)=O
InChI Identifier
InChI=1S/C60H82N4O26/c1-24-45(68)31(61(9)10)18-36(80-24)84-33-21-57(5,74)20-29-40(33)48(71)42-43(47(29)70)49(72)41-28(46(42)69)14-15-30-52(41)89-56-50(73)44(62(11)12)55(60(30,8)90-56)88-39-23-59(7,64(77)78)54(27(4)83-39)87-38-22-58(6,63(75)76)53(26(3)82-38)86-37-19-32(79-13)51(25(2)81-37)85-35(67)17-16-34(65)66/h14-15,24-27,31-33,36-39,44-45,50-51,53-56,68,70-71,73-74H,16-23H2,1-13H3,(H,65,66)/t24-,25-,26+,27-,31-,32-,33+,36+,37+,38+,39+,44+,45+,50+,51+,53-,54+,55-,56+,57-,58-,59+,60+/m1/s1
InChI KeyREJZVZSFWFSPHT-CVDRQPDJSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces virginiaeLOTUS Database
Species Where Detected
Species NameSourceReference
Streptomyces virginiae MF266-g4 (FERM P-5401 ATCC 31910)KNApSAcK Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.24ALOGPS
logP2.54ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)3.65ChemAxon
pKa (Strongest Basic)8.03ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count27ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area393.18 ŲChemAxon
Rotatable Bond Count18ChemAxon
Refractivity303.01 m³·mol⁻¹ChemAxon
Polarizability130.82 ųChemAxon
Number of Rings10ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA020960
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78443055
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139589055
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Ishii K, Kondo S, Nishimura Y, Hamada M, Takeuchi T, Umezawa H: Decilorubicin, a new anthracycline antibiotic. J Antibiot (Tokyo). 1983 Apr;36(4):451-3. doi: 10.7164/antibiotics.36.451. [PubMed:6853375 ]