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Record Information
Version1.0
Created at2021-01-06 06:59:26 UTC
Updated at2021-07-15 17:37:04 UTC
NP-MRD IDNP0021712
Secondary Accession NumbersNone
Natural Product Identification
Common NameLaspartomycin
Provided ByNPAtlasNPAtlas Logo
Description Laspartomycin is found in Streptomyces. It was first documented in 1968 (PMID: 5673294). Based on a literature review very few articles have been published on (3S)-3-{[(3S,7S,13S,16S,23S,29S,35S)-13-[(2R)-butan-2-yl]-23,29-bis(carboxymethyl)-6,15,18,20,25,28,31,34-octahydroxy-16-[(1R)-1-hydroxyethyl]-2,12,22-trioxo-1,5,11,14,17,21,24,27,30,33-decaazatricyclo[33.4.0.0⁷,¹¹]Nonatriaconta-5,14,17,20,24,27,30,33-octaen-3-yl]-C-hydroxycarbonimidoyl}-3-{[(2E)-1-hydroxy-13-methyltetradec-2-en-1-ylidene]amino}propanoic acid.
Structure
Thumb
Synonyms
ValueSource
(3S)-3-{[(3S,7S,13S,16S,23S,29S,35S)-13-[(2R)-butan-2-yl]-23,29-bis(carboxymethyl)-6,15,18,20,25,28,31,34-octahydroxy-16-[(1R)-1-hydroxyethyl]-2,12,22-trioxo-1,5,11,14,17,21,24,27,30,33-decaazatricyclo[33.4.0.0,]nonatriaconta-5,14,17,20,24,27,30,33-octaen-3-yl]-C-hydroxycarbonimidoyl}-3-{[(2E)-1-hydroxy-13-methyltetradec-2-en-1-ylidene]amino}propanoateGenerator
Chemical FormulaC58H90N12O20
Average Mass1275.4220 Da
Monoisotopic Mass1274.63943 Da
IUPAC Name(3S)-3-{[(3S,7S,13S,16S,23S,29S,35S)-13-[(2R)-butan-2-yl]-23,29-bis(carboxymethyl)-16-[(1R)-1-hydroxyethyl]-2,6,12,15,18,20,22,25,28,31,34-undecaoxo-1,5,11,14,17,21,24,27,30,33-decaazatricyclo[33.4.0.0^{7,11}]nonatriacontan-3-yl]carbamoyl}-3-[(2E)-13-methyltetradec-2-enamido]propanoic acid
Traditional Name(3S)-3-{[(3S,7S,13S,16S,23S,29S,35S)-13-[(2R)-butan-2-yl]-23,29-bis(carboxymethyl)-16-[(1R)-1-hydroxyethyl]-2,6,12,15,18,20,22,25,28,31,34-undecaoxo-1,5,11,14,17,21,24,27,30,33-decaazatricyclo[33.4.0.0^{7,11}]nonatriacontan-3-yl]carbamoyl}-3-[(2E)-13-methyltetradec-2-enamido]propanoic acid
CAS Registry NumberNot Available
SMILES
CC[C@@H](C)[C@@H]1NC(=O)[C@@H](NC(=O)CC(=O)NC(=O)[C@H](CC(O)=O)NC(=O)CNC(=O)[C@H](CC(O)=O)NC(=O)CNC(=O)[C@@H]2CCCCN2C(=O)[C@H](CNC(=O)[C@@H]2CCCN2C1=O)NC(=O)[C@H](CC(O)=O)NC(=O)\C=C\CCCCCCCCCC(C)C)[C@@H](C)O
InChI Identifier
InChI=1S/C58H90N12O20/c1-6-33(4)49-58(90)70-24-18-21-40(70)54(86)59-29-38(65-52(84)36(26-47(79)80)62-41(72)22-15-13-11-9-7-8-10-12-14-19-32(2)3)57(89)69-23-17-16-20-39(69)55(87)61-31-45(76)63-35(25-46(77)78)51(83)60-30-44(75)64-37(27-48(81)82)53(85)67-43(74)28-42(73)66-50(34(5)71)56(88)68-49/h15,22,32-40,49-50,71H,6-14,16-21,23-31H2,1-5H3,(H,59,86)(H,60,83)(H,61,87)(H,62,72)(H,63,76)(H,64,75)(H,65,84)(H,66,73)(H,68,88)(H,77,78)(H,79,80)(H,81,82)(H,67,74,85)/b22-15+/t33-,34-,35+,36+,37+,38+,39+,40+,49+,50+/m1/s1
InChI KeyDSQHLPWCVYEPGM-GHJFOLTQSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.96ALOGPS
logP-3.1ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)3.34ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count20ChemAxon
Hydrogen Donor Count14ChemAxon
Polar Surface Area480.82 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity312.89 m³·mol⁻¹ChemAxon
Polarizability133.69 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA021238
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78443189
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139589219
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Naganawa H, Hamada M, Maeda K, Okami Y, Takeushi T: Laspartomycin, a new anti-staphylococcal peptide. J Antibiot (Tokyo). 1968 Jan;21(1):55-62. doi: 10.7164/antibiotics.21.55. [PubMed:5673294 ]