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Record Information
Version1.0
Created at2021-01-06 06:07:49 UTC
Updated at2021-07-15 17:34:31 UTC
NP-MRD IDNP0020759
Secondary Accession NumbersNone
Natural Product Identification
Common NameOrfamide H
Provided ByNPAtlasNPAtlas Logo
Description Orfamide H is found in Pseudomonas protegens and Pseudomonas protegens CHA0. It was first documented in 2020 (PMID: 31666660). Based on a literature review very few articles have been published on 4-{[21-(butan-2-yl)-5,8,11,14,17,20,23-heptahydroxy-6,15-bis(hydroxymethyl)-25-methyl-9,12,18-tris(2-methylpropyl)-2-oxo-3-(propan-2-yl)-1-oxa-4,7,10,13,16,19,22-heptaazacyclopentacosa-4,7,10,13,16,19,22-heptaen-24-yl]-C-hydroxycarbonimidoyl}-4-({2-[(1,3-dihydroxypentadecylidene)amino]-1-hydroxy-4-methylpentylidene}amino)butanoic acid.
Structure
Thumb
Synonyms
ValueSource
4-{[21-(butan-2-yl)-5,8,11,14,17,20,23-heptahydroxy-6,15-bis(hydroxymethyl)-25-methyl-9,12,18-tris(2-methylpropyl)-2-oxo-3-(propan-2-yl)-1-oxa-4,7,10,13,16,19,22-heptaazacyclopentacosa-4,7,10,13,16,19,22-heptaen-24-yl]-C-hydroxycarbonimidoyl}-4-({2-[(1,3-dihydroxypentadecylidene)amino]-1-hydroxy-4-methylpentylidene}amino)butanoateGenerator
Chemical FormulaC65H116N10O17
Average Mass1309.6960 Da
Monoisotopic Mass1308.85199 Da
IUPAC Name(4R)-4-{[(3R,6R,12S,15R,18S,21S,24R,25R)-21-[(2R)-butan-2-yl]-6,15-bis(hydroxymethyl)-25-methyl-9,12,18-tris(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-3-(propan-2-yl)-1-oxa-4,7,10,13,16,19,22-heptaazacyclopentacosan-24-yl]carbamoyl}-4-[(2R)-2-[(3S)-3-hydroxypentadecanamido]-4-methylpentanamido]butanoic acid
Traditional Name(4R)-4-{[(3R,6R,12S,15R,18S,21S,24R,25R)-21-[(2R)-butan-2-yl]-6,15-bis(hydroxymethyl)-3-isopropyl-25-methyl-9,12,18-tris(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1-oxa-4,7,10,13,16,19,22-heptaazacyclopentacosan-24-yl]carbamoyl}-4-[(2R)-2-[(3S)-3-hydroxypentadecanamido]-4-methylpentanamido]butanoic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCC(O)CC(=O)NC(CC(C)C)C(=O)NC(CCC(O)=O)C(=O)NC1C(C)OC(=O)C(NC(=O)C(CO)NC(=O)C(CC(C)C)NC(=O)C(CC(C)C)NC(=O)C(CO)NC(=O)C(CC(C)C)NC(=O)C(NC1=O)C(C)CC)C(C)C
InChI Identifier
InChI=1S/C65H116N10O17/c1-15-17-18-19-20-21-22-23-24-25-26-43(78)33-51(79)66-45(29-36(3)4)57(83)67-44(27-28-52(80)81)56(82)75-55-42(14)92-65(91)53(40(11)12)73-62(88)50(35-77)72-59(85)47(31-38(7)8)68-58(84)46(30-37(5)6)69-61(87)49(34-76)71-60(86)48(32-39(9)10)70-63(89)54(41(13)16-2)74-64(55)90/h36-50,53-55,76-78H,15-35H2,1-14H3,(H,66,79)(H,67,83)(H,68,84)(H,69,87)(H,70,89)(H,71,86)(H,72,85)(H,73,88)(H,74,90)(H,75,82)(H,80,81)
InChI KeyDWMZHBRAZSJRFR-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Pseudomonas protegensLOTUS Database
Pseudomonas protegens CHA0NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.84ALOGPS
logP4.04ChemAxon
logS-5.1ALOGPS
pKa (Strongest Acidic)3.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count16ChemAxon
Hydrogen Donor Count14ChemAxon
Polar Surface Area415.29 ŲChemAxon
Rotatable Bond Count34ChemAxon
Refractivity340.61 m³·mol⁻¹ChemAxon
Polarizability145.58 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA024967
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound145720744
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Ma Z, Zhang S, Liang J, Sun K, Hu J: Isolation and characterization of a new cyclic lipopeptide orfamide H from Pseudomonas protegens CHA0. J Antibiot (Tokyo). 2020 Mar;73(3):179-183. doi: 10.1038/s41429-019-0254-0. Epub 2019 Oct 30. [PubMed:31666660 ]