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Record Information
Version1.0
Created at2021-01-06 03:06:10 UTC
Updated at2021-07-15 17:28:21 UTC
NP-MRD IDNP0018487
Secondary Accession NumbersNone
Natural Product Identification
Common NameStreptocidin R
Provided ByNPAtlasNPAtlas Logo
Description Streptocidin R is found in Brevibacillus sp. Leaf182. It was first documented in 2018 (PMID: 30038309). Based on a literature review very few articles have been published on 3-[21-(4-aminobutyl)-27-benzyl-1,4,7,10,13,16,19,22,25-nonahydroxy-9-[(C-hydroxycarbonimidoyl)methyl]-15-[(4-hydroxyphenyl)methyl]-6-[(1H-indol-3-yl)methyl]-3,24-bis(2-methylpropyl)-28-oxo-18-(propan-2-yl)-3H,6H,9H,12H,15H,18H,21H,24H,27H,28H,30H,31H,32H,32aH-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28-decaazacyclotriacontan-12-yl]propanimidic acid.
Structure
Thumb
Synonyms
ValueSource
3-[21-(4-Aminobutyl)-27-benzyl-1,4,7,10,13,16,19,22,25-nonahydroxy-9-[(C-hydroxycarbonimidoyl)methyl]-15-[(4-hydroxyphenyl)methyl]-6-[(1H-indol-3-yl)methyl]-3,24-bis(2-methylpropyl)-28-oxo-18-(propan-2-yl)-3H,6H,9H,12H,15H,18H,21H,24H,27H,28H,30H,31H,32H,32ah-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28-decaazacyclotriacontan-12-yl]propanimidateGenerator
Chemical FormulaC66H92N14O13
Average Mass1289.5470 Da
Monoisotopic Mass1288.69683 Da
IUPAC Name3-[(3R,6S,9S,12S,15S,18S,21S,24S,27S,32aR)-21-(4-aminobutyl)-27-benzyl-9-(carbamoylmethyl)-15-[(4-hydroxyphenyl)methyl]-6-[(1H-indol-3-yl)methyl]-3,24-bis(2-methylpropyl)-1,4,7,10,13,16,19,22,25,28-decaoxo-18-(propan-2-yl)-dotriacontahydropyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28-decaazacyclotriacontan-12-yl]propanamide
Traditional Name3-[(3R,6S,9S,12S,15S,18S,21S,24S,27S,32aR)-21-(4-aminobutyl)-27-benzyl-9-(carbamoylmethyl)-15-[(4-hydroxyphenyl)methyl]-6-(1H-indol-3-ylmethyl)-18-isopropyl-3,24-bis(2-methylpropyl)-1,4,7,10,13,16,19,22,25,28-decaoxo-docosahydropyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28-decaazacyclotriacontan-12-yl]propanamide
CAS Registry NumberNot Available
SMILES
CC(C)CC1NC(=O)C2CCCN2C(=O)C(CC2=CC=CC=C2)NC(=O)C(CC(C)C)NC(=O)C(CCCCN)NC(=O)C(NC(=O)C(CC2=CC=C(O)C=C2)NC(=O)C(CCC(N)=O)NC(=O)C(CC(N)=O)NC(=O)C(CC2=CNC3=CC=CC=C23)NC1=O)C(C)C
InChI Identifier
InChI=1S/C66H92N14O13/c1-36(2)29-47-60(87)78-52(32-39-15-8-7-9-16-39)66(93)80-28-14-20-53(80)64(91)77-48(30-37(3)4)59(86)75-50(33-41-35-70-44-18-11-10-17-43(41)44)61(88)76-51(34-55(69)83)62(89)71-46(25-26-54(68)82)58(85)74-49(31-40-21-23-42(81)24-22-40)63(90)79-56(38(5)6)65(92)72-45(57(84)73-47)19-12-13-27-67/h7-11,15-18,21-24,35-38,45-53,56,70,81H,12-14,19-20,25-34,67H2,1-6H3,(H2,68,82)(H2,69,83)(H,71,89)(H,72,92)(H,73,84)(H,74,85)(H,75,86)(H,76,88)(H,77,91)(H,78,87)(H,79,90)
InChI KeyKLGUDDOVDXKDML-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Brevibacillus sp. Leaf182NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.84ALOGPS
logP-0.52ChemAxon
logS-4.9ALOGPS
pKa (Strongest Acidic)9.42ChemAxon
pKa (Strongest Basic)10.26ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count14ChemAxon
Hydrogen Donor Count14ChemAxon
Polar Surface Area430.43 ŲChemAxon
Rotatable Bond Count20ChemAxon
Refractivity341.71 m³·mol⁻¹ChemAxon
Polarizability138.7 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA028520
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146684625
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Helfrich EJN, Vogel CM, Ueoka R, Schafer M, Ryffel F, Muller DB, Probst S, Kreuzer M, Piel J, Vorholt JA: Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome. Nat Microbiol. 2018 Aug;3(8):909-919. doi: 10.1038/s41564-018-0200-0. Epub 2018 Jul 23. [PubMed:30038309 ]