Np mrd loader

Record Information
Version1.0
Created at2021-01-06 02:15:00 UTC
Updated at2021-07-15 17:25:49 UTC
NP-MRD IDNP0017563
Secondary Accession NumbersNone
Natural Product Identification
Common NameNeothioviridamide
Provided ByNPAtlasNPAtlas Logo
Description Neothioviridamide is found in bacterium. It was first documented in 2018 (PMID: 29381067). Based on a literature review very few articles have been published on Neothioviridamide.
Structure
Thumb
Synonyms
ValueSource
5-{[(9S)-9-benzyl-5,8,11,14,17-pentahydroxy-18-{[1-hydroxy-2-({2-[(2-{[(2S)-1-hydroxy-2-{[2-({2-[(1-hydroxy-2-oxopropylidene)amino]-3-methyl-1-sulphanylbutylidene}amino)-4-(methylsulphanyl)-1-sulphanylbutylidene]amino}propylidene]amino}-1-sulphanylpropylidene)amino]-1-sulphanylpropylidene}amino)propylidene]amino}-12,19-dimethyl-15-(propan-2-yl)-1-thia-4,7,10,13,16-pentaazacyclononadeca-2,4,7,10,13,16-hexaen-6-yl](hydroxy)methyl}-1,3-dimethyl-1H-imidazol-3-iumGenerator
Chemical FormulaC56H85N14O10S6
Average Mass1306.7400 Da
Monoisotopic Mass1305.48919 Da
IUPAC Name5-[(S)-[(2Z,6S,9S,12R,15S,18R,19R)-9-benzyl-12,19-dimethyl-18-[(2S)-2-[(2S)-2-[(2S)-2-[(2S)-2-[(2R)-2-[(2R)-3-methyl-2-(2-oxopropanamido)butanethioamido]-4-(methylsulfanyl)butanethioamido]propanamido]propanethioamido]propanethioamido]propanamido]-5,8,11,14,17-pentaoxo-15-(propan-2-yl)-1-thia-4,7,10,13,16-pentaazacyclononadec-2-en-6-yl](hydroxy)methyl]-1,3-dimethyl-1H-imidazol-3-ium
Traditional Name4-[(S)-[(2Z,6S,9S,12R,15S,18R,19R)-9-benzyl-15-isopropyl-12,19-dimethyl-18-[(2S)-2-[(2S)-2-[(2S)-2-[(2S)-2-[(2R)-2-[(2R)-3-methyl-2-(2-oxopropanamido)butanethioamido]-4-(methylsulfanyl)butanethioamido]propanamido]propanethioamido]propanethioamido]propanamido]-5,8,11,14,17-pentaoxo-1-thia-4,7,10,13,16-pentaazacyclononadec-2-en-6-yl](hydroxy)methyl]-1,3-dimethylimidazol-1-ium
CAS Registry NumberNot Available
SMILES
CSCCC(NC(=S)C(NC(=O)C(C)=O)C(C)C)C(=S)N[C@@H](C)C(=O)NC(C)C(=S)NC(C)C(=S)NC(C)C(=O)NC1C(C)S\C=C/NC(=O)C(NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)C(C)NC(=O)C(NC1=O)C(C)C)C(O)C1=C[N+](C)=CN1C
InChI Identifier
InChI=1S/C56H84N14O10S6/c1-27(2)40-51(79)58-29(5)46(74)63-38(24-36-18-16-15-17-19-36)49(77)68-43(44(72)39-25-69(12)26-70(39)13)50(78)57-21-23-86-35(11)42(52(80)65-40)67-47(75)31(7)60-54(82)33(9)62-53(81)32(8)59-45(73)30(6)61-55(83)37(20-22-85-14)64-56(84)41(28(3)4)66-48(76)34(10)71/h15-19,21,23,25-33,35,37-38,40-44,72H,20,22,24H2,1-14H3,(H11-,57,58,59,60,61,62,63,64,65,66,67,68,73,74,75,76,77,78,79,80,81,82,83,84)/p+1/b23-21-/t29?,30-,31?,32?,33?,35?,37?,38-,40?,41?,42?,43?,44?/m0/s1
InChI KeyFRMXVRMEEBFTBC-HANIZAFPSA-O
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Bacterium; sewage; soilNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.25ALOGPS
logP-3.2ChemAxon
logS-5.8ALOGPS
pKa (Strongest Acidic)10.21ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count13ChemAxon
Polar Surface Area327.03 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity349.56 m³·mol⁻¹ChemAxon
Polarizability139.3 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA022547
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78443815
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139589891
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Kawahara T, Izumikawa M, Kozone I, Hashimoto J, Kagaya N, Koiwai H, Komatsu M, Fujie M, Sato N, Ikeda H, Shin-Ya K: Neothioviridamide, a Polythioamide Compound Produced by Heterologous Expression of a Streptomyces sp. Cryptic RiPP Biosynthetic Gene Cluster. J Nat Prod. 2018 Feb 23;81(2):264-269. doi: 10.1021/acs.jnatprod.7b00607. Epub 2018 Jan 30. [PubMed:29381067 ]