Np mrd loader

Record Information
Version1.0
Created at2021-01-06 00:59:25 UTC
Updated at2021-07-15 17:21:04 UTC
NP-MRD IDNP0015834
Secondary Accession NumbersNone
Natural Product Identification
Common NameIbomycin
Provided ByNPAtlasNPAtlas Logo
Description Ibomycin is found in bacterium. It was first documented in 2016 (PMID: 27746129).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC91H156N2O40
Average Mass1918.2230 Da
Monoisotopic Mass1917.02344 Da
IUPAC NameN-[(2S,3R,4R,5S,6R)-2-{[(1R,2R,3R,6S,8R,10Z,12Z,16R,17S,18Z,20Z,22S,24R,26R,28S,29S,30R,32S,33R)-16-[(2S,3S,4R,5R,6R,7S)-7-{[(2R,5R,6R)-5-{[(2S,5R,6R)-5-{[(2S,4S,5S,6S)-4-amino-5-hydroxy-4,6-dimethyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-3,5-dihydroxy-4,6-dimethylnonan-2-yl]-1,6,8,22,24,26,32,33-octahydroxy-2-{[(2S,4R,5S,6R)-5-hydroxy-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-({[(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}methyl)oxan-2-yl]oxy}-3,17,29-trimethyl-14-oxo-15,34-dioxabicyclo[28.3.1]tetratriaconta-10,12,18,20-tetraen-28-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl]acetamide
Traditional NameN-[(2S,3R,4R,5S,6R)-2-{[(1R,2R,3R,6S,8R,10Z,12Z,16R,17S,18Z,20Z,22S,24R,26R,28S,29S,30R,32S,33R)-16-[(2S,3S,4R,5R,6R,7S)-7-{[(2R,5R,6R)-5-{[(2S,5R,6R)-5-{[(2S,4S,5S,6S)-4-amino-5-hydroxy-4,6-dimethyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-3,5-dihydroxy-4,6-dimethylnonan-2-yl]-1,6,8,22,24,26,32,33-octahydroxy-2-{[(2S,4R,5S,6R)-5-hydroxy-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-({[(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}methyl)oxan-2-yl]oxy}-3,17,29-trimethyl-14-oxo-15,34-dioxabicyclo[28.3.1]tetratriaconta-10,12,18,20-tetraen-28-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl]acetamide
CAS Registry NumberNot Available
SMILES
CCC(O[C@H]1CC[C@@H](O[C@H]2CC[C@@H](O[C@H]3C[C@](C)(N)[C@H](O)[C@H](C)O3)[C@@H](C)O2)[C@@H](C)O1)[C@H](C)[C@H](O)[C@@H](C)[C@H](O)[C@H](C)C1OC(=O)\C=C/C=C\C[C@@H](O)C[C@@H](O)CC[C@@H](C)C(O[C@H]2C[C@@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@H](O)[C@@H](CO[C@@H]3O[C@H](C)[C@@H](O)[C@H](O)[C@@H]3O)O2)C2(O)OC(CC(O)C2O)[C@@H](C)C(C[C@H](O)C[C@@H](O)C[C@H](O)\C=C/C=C\[C@@H]1C)O[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1NC(C)=O
InChI Identifier
InChI=1S/C91H156N2O40/c1-14-57(123-67-28-26-58(46(8)119-67)124-68-29-27-59(47(9)120-68)125-70-36-90(13,92)84(115)49(11)121-70)43(5)72(104)44(6)73(105)45(7)83-40(2)20-18-19-22-52(98)31-54(100)32-55(101)33-60(127-87-71(93-50(12)96)78(110)76(108)63(37-94)129-87)42(4)61-34-56(102)85(116)91(117,133-61)86(41(3)24-25-53(99)30-51(97)21-16-15-17-23-66(103)131-83)132-69-35-62(128-89-82(114)80(112)77(109)64(38-95)130-89)75(107)65(126-69)39-118-88-81(113)79(111)74(106)48(10)122-88/h15-20,22-23,40-49,51-65,67-89,94-95,97-102,104-117H,14,21,24-39,92H2,1-13H3,(H,93,96)/b16-15-,20-18-,22-19-,23-17-/t40-,41+,42-,43-,44+,45-,46+,47+,48+,49-,51+,52+,53-,54-,55+,56?,57?,58+,59+,60?,61?,62+,63+,64+,65+,67-,68-,69-,70-,71+,72-,73-,74+,75-,76+,77+,78+,79-,80-,81-,82+,83?,84+,85?,86?,87-,88+,89+,90-,91?/m0/s1
InChI KeyPGNAYAZDEXWQEC-KXCDUBHPSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Bacterium; sewage; soilNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-3.8ChemAxon
pKa (Strongest Acidic)10.32ChemAxon
pKa (Strongest Basic)9.7ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count40ChemAxon
Hydrogen Donor Count24ChemAxon
Polar Surface Area664.93 ŲChemAxon
Rotatable Bond Count25ChemAxon
Refractivity467.08 m³·mol⁻¹ChemAxon
Polarizability203.05 ųChemAxon
Number of Rings9ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
External LinksNot Available
References
General References
  1. Robbins N, Spitzer M, Wang W, Waglechner N, Patel DJ, O'Brien JS, Ejim L, Ejim O, Tyers M, Wright GD: Discovery of Ibomycin, a Complex Macrolactone that Exerts Antifungal Activity by Impeding Endocytic Trafficking and Membrane Function. Cell Chem Biol. 2016 Nov 17;23(11):1383-1394. doi: 10.1016/j.chembiol.2016.08.015. Epub 2016 Oct 13. [PubMed:27746129 ]