Np mrd loader

Record Information
Version1.0
Created at2021-01-06 00:58:52 UTC
Updated at2021-07-15 17:21:02 UTC
NP-MRD IDNP0015820
Secondary Accession NumbersNone
Natural Product Identification
Common NameActinomycin Y6
Provided ByNPAtlasNPAtlas Logo
Description Actinomycin Y6 is found in Streptomyces. It was first documented in 2016 (PMID: 27736087). Based on a literature review very few articles have been published on (6R)-N-[(6S,9R,10S,13R,16S,18S,18aS)-11,18-dihydroxy-2,5,9,16-tetramethyl-1,4,7,14-tetraoxo-6,13-bis(propan-2-yl)-1H,2H,3H,4H,5H,6H,7H,9H,10H,13H,14H,16H,17H,18H,18aH-pyrrolo[2,1-i]1-oxa-4,7,10,13-tetraazacyclohexadecan-10-yl]-6-[(6S,9S,12R,17aS)-7,10-dihydroxy-2,5,6-trimethyl-1,4,13,16-tetraoxo-12-(propan-2-yl)-1H,2H,3H,4H,5H,6H,9H,12H,13H,15H,16H,17H,17aH-pyrrolo[1,2-a]1,4,7,10,13-pentaazacyclopentadecan-9-yl]-10,14-dimethyl-3,9-dioxo-4,12-dioxa-7,19-diazatetracyclo[9.8.0.0²,⁸.0¹³,¹⁸]Nonadeca-1(19),2(8),10,13,15,17-hexaene-17-carboximidic acid.
Structure
Thumb
Synonyms
ValueSource
(6R)-N-[(6S,9R,10S,13R,16S,18S,18AS)-11,18-dihydroxy-2,5,9,16-tetramethyl-1,4,7,14-tetraoxo-6,13-bis(propan-2-yl)-1H,2H,3H,4H,5H,6H,7H,9H,10H,13H,14H,16H,17H,18H,18ah-pyrrolo[2,1-i]1-oxa-4,7,10,13-tetraazacyclohexadecan-10-yl]-6-[(6S,9S,12R,17as)-7,10-dihydroxy-2,5,6-trimethyl-1,4,13,16-tetraoxo-12-(propan-2-yl)-1H,2H,3H,4H,5H,6H,9H,12H,13H,15H,16H,17H,17ah-pyrrolo[1,2-a]1,4,7,10,13-pentaazacyclopentadecan-9-yl]-10,14-dimethyl-3,9-dioxo-4,12-dioxa-7,19-diazatetracyclo[9.8.0.0,.0,]nonadeca-1(19),2(8),10,13,15,17-hexaene-17-carboximidateGenerator
Chemical FormulaC61H80N12O18
Average Mass1269.3770 Da
Monoisotopic Mass1268.57135 Da
IUPAC Name(6R)-N-[(6S,9R,10S,13R,16S,18S,18aS)-18-hydroxy-2,5,9,16-tetramethyl-1,4,7,11,14-pentaoxo-6,13-bis(propan-2-yl)-hexadecahydro-1H-pyrrolo[2,1-i]1-oxa-4,7,10,13-tetraazacyclohexadecan-10-yl]-6-[(6S,9S,12R,17aS)-2,5,6-trimethyl-1,4,7,10,13,16-hexaoxo-12-(propan-2-yl)-hexadecahydro-1H-pyrrolo[1,2-a]1,4,7,10,13-pentaazacyclopentadecan-9-yl]-10,14-dimethyl-3,9-dioxo-4,12-dioxa-7,19-diazatetracyclo[9.8.0.0^{2,8}.0^{13,18}]nonadeca-1(19),2(8),10,13,15,17-hexaene-17-carboxamide
Traditional Name(6R)-6-[(6S,9S,12R,17aS)-12-isopropyl-2,5,6-trimethyl-1,4,7,10,13,16-hexaoxo-octahydro-3H-pyrrolo[1,2-a]1,4,7,10,13-pentaazacyclopentadecan-9-yl]-N-[(6S,9R,10S,13R,16S,18S,18aS)-18-hydroxy-6,13-diisopropyl-2,5,9,16-tetramethyl-1,4,7,11,14-pentaoxo-decahydropyrrolo[2,1-i]1-oxa-4,7,10,13-tetraazacyclohexadecan-10-yl]-10,14-dimethyl-3,9-dioxo-4,12-dioxa-7,19-diazatetracyclo[9.8.0.0^{2,8}.0^{13,18}]nonadeca-1(19),2(8),10,13,15,17-hexaene-17-carboxamide
CAS Registry NumberNot Available
SMILES
CC(C)[C@H]1NC(=O)[C@@H](NC(=O)[C@H](C)N(C)C(=O)CN(C)C(=O)[C@@H]2CC(=O)CN2C1=O)[C@@H]1COC(=O)C2=C(N1)C(=O)C(C)=C1OC3=C(C)C=CC(C(=O)N[C@H]4[C@@H](C)OC(=O)[C@H](C(C)C)N(C)C(=O)CN(C)C(=O)[C@@H]5[C@@H](O)C[C@H](C)N5C(=O)[C@H](NC4=O)C(C)C)=C3N=C21
InChI Identifier
InChI=1S/C61H80N12O18/c1-24(2)40-57(84)72-20-32(74)19-35(72)56(83)68(12)21-37(76)70(14)30(10)52(79)67-44(55(82)64-40)34-23-89-60(87)39-45(62-34)49(78)29(9)51-46(39)63-43-33(17-16-27(7)50(43)91-51)53(80)66-42-31(11)90-61(88)47(26(5)6)71(15)38(77)22-69(13)59(86)48-36(75)18-28(8)73(48)58(85)41(25(3)4)65-54(42)81/h16-17,24-26,28,30-31,34-36,40-42,44,47-48,62,75H,18-23H2,1-15H3,(H,64,82)(H,65,81)(H,66,80)(H,67,79)/t28-,30-,31+,34-,35-,36-,40+,41+,42-,44-,47-,48-/m0/s1
InChI KeyKLFMLKUJSQSQEM-SDCBHFABSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.81ALOGPS
logP-2.2ChemAxon
logS-4.2ALOGPS
pKa (Strongest Acidic)10.17ChemAxon
pKa (Strongest Basic)-3.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count18ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area378.85 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity321.2 m³·mol⁻¹ChemAxon
Polarizability132.31 ųChemAxon
Number of Rings8ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA022070
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID76791867
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound137646860
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Cai W, Wang X, Elshahawi SI, Ponomareva LV, Liu X, McErlean MR, Cui Z, Arlinghaus AL, Thorson JS, Van Lanen SG: Antibacterial and Cytotoxic Actinomycins Y6-Y9 and Zp from Streptomyces sp. Strain Go-GS12. J Nat Prod. 2016 Oct 28;79(10):2731-2739. doi: 10.1021/acs.jnatprod.6b00742. Epub 2016 Oct 13. [PubMed:27736087 ]