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Record Information
Version1.0
Created at2021-01-06 00:54:21 UTC
Updated at2021-07-15 17:20:42 UTC
NP-MRD IDNP0015710
Secondary Accession NumbersNone
Natural Product Identification
Common NameAchromosin
Provided ByNPAtlasNPAtlas Logo
Description Achromosin is found in Streptomyces achromogenes and Streptomyces achromogenes subsp. achromogenes. It was first documented in 2017 (PMID: 27599763). Based on a literature review very few articles have been published on Achromosin.
Structure
Thumb
Synonyms
ValueSource
2-{[2-({2-[(2-{[2-({3-amino-1-hydroxy-3-[(2-hydroxy-1-{[1-({2-hydroxy-5'-oxospiro[indole-3,2'-oxolane]-4'-yl}-C-hydroxycarbonimidoyl)-2-methylbutyl]-C-hydroxycarbonimidoyl}propyl)-C-hydroxycarbonimidoyl]propylidene}amino)-1-hydroxyethylidene]amino}-1-hydroxy-3-methylpentylidene)amino]-1-hydroxyethylidene}amino)-1,3-dihydroxypropylidene]amino}-N-[2-hydroxy-1-({2-hydroxy-5'-oxospiro[indole-3,2'-oxolane]-4'-yl}-C-hydroxycarbonimidoyl)propyl]pentanediimidateGenerator
Chemical FormulaC58H78N14O20
Average Mass1291.3400 Da
Monoisotopic Mass1290.55168 Da
IUPAC Name(2S)-2-[(2R)-2-{2-[(2R,3R)-2-{2-[(3R)-3-amino-3-{[(1S,2S)-1-{[(1S,2S)-1-{[(3S,4'R)-2,5'-dioxo-1,2-dihydrospiro[indole-3,2'-oxolane]-4'-yl]carbamoyl}-2-methylbutyl]carbamoyl}-2-hydroxypropyl]carbamoyl}propanamido]acetamido}-3-methylpentanamido]acetamido}-3-hydroxypropanamido]-N-[(1S,2S)-1-{[(3S,4'S)-2,5'-dioxo-1,2-dihydrospiro[indole-3,2'-oxolane]-4'-yl]carbamoyl}-2-hydroxypropyl]pentanediamide
Traditional Name(2S)-2-[(2R)-2-{2-[(2R,3R)-2-{2-[(3R)-3-amino-3-{[(1S,2S)-1-{[(1S,2S)-1-{[(3S,4'R)-2,5'-dioxo-1H-spiro[indole-3,2'-oxolane]-4'-yl]carbamoyl}-2-methylbutyl]carbamoyl}-2-hydroxypropyl]carbamoyl}propanamido]acetamido}-3-methylpentanamido]acetamido}-3-hydroxypropanamido]-N-[(1S,2S)-1-{[(3S,4'S)-2,5'-dioxo-1H-spiro[indole-3,2'-oxolane]-4'-yl]carbamoyl}-2-hydroxypropyl]pentanediamide
CAS Registry NumberNot Available
SMILES
CCC(C)C(NC(=O)CNC(=O)CC(N)C(=O)NC(C(C)O)C(=O)NC(C(C)CC)C(=O)NC1CC2(OC1=O)C(=O)NC1=CC=CC=C21)C(=O)NCC(=O)NC(CO)C(=O)NC(CCC(N)=O)C(=O)NC(C(C)O)C(=O)NC1CC2(OC1=O)C(=O)NC1=CC=CC=C21
InChI Identifier
InChI=1S/C58H78N14O20/c1-7-25(3)42(69-41(79)22-61-39(77)19-31(59)46(80)71-45(28(6)75)52(86)70-43(26(4)8-2)50(84)65-35-20-57(91-53(35)87)29-13-9-11-15-32(29)67-55(57)89)49(83)62-23-40(78)63-37(24-73)48(82)64-34(17-18-38(60)76)47(81)72-44(27(5)74)51(85)66-36-21-58(92-54(36)88)30-14-10-12-16-33(30)68-56(58)90/h9-16,25-28,31,34-37,42-45,73-75H,7-8,17-24,59H2,1-6H3,(H2,60,76)(H,61,77)(H,62,83)(H,63,78)(H,64,82)(H,65,84)(H,66,85)(H,67,89)(H,68,90)(H,69,79)(H,70,86)(H,71,80)(H,72,81)
InChI KeyUPDWXHZCLUCKNY-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces achromogenesLOTUS Database
Streptomyces achromogenes subsp. achromogenesNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.01ALOGPS
logP-7.3ChemAxon
logS-4.3ALOGPS
pKa (Strongest Acidic)11.02ChemAxon
pKa (Strongest Basic)7.05ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count17ChemAxon
Polar Surface Area531.6 ŲChemAxon
Rotatable Bond Count31ChemAxon
Refractivity314.88 m³·mol⁻¹ChemAxon
Polarizability133.11 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA021561
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78444460
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139589402
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Kaweewan I, Ohnishi-Kameyama M, Kodani S: Isolation of a new antibacterial peptide achromosin from Streptomyces achromogenes subsp. achromogenes based on genome mining. J Antibiot (Tokyo). 2017 Feb;70(2):208-211. doi: 10.1038/ja.2016.108. Epub 2016 Sep 7. [PubMed:27599763 ]