Np mrd loader

Record Information
Version1.0
Created at2021-01-05 23:49:20 UTC
Updated at2021-07-15 17:18:04 UTC
NP-MRD IDNP0014729
Secondary Accession NumbersNone
Natural Product Identification
Common NameAmbobactin
Provided ByNPAtlasNPAtlas Logo
Description Ambobactin is found in Streptomyces. It was first documented in 2015 (PMID: 26370952). Based on a literature review very few articles have been published on Ambobactin.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC59H77N13O19
Average Mass1272.3370 Da
Monoisotopic Mass1271.54587 Da
IUPAC Name(3S)-3-amino-3-{[(1S)-1-{[(3E,6S,9R,12R,13R,21R,24R,27S,28R,31R,32S)-13,32-dihydroxy-9-[(1S)-1-hydroxy-2-methylpropyl]-24-[(1R)-1-hydroxyethyl]-6-[(1S)-1-(1H-indol-3-yl)ethyl]-3-[(1H-indol-3-yl)methylidene]-21,28-dimethyl-2,5,8,11,17,20,23,26,30-nonaoxo-29-oxa-1,4,7,10,16,19,22,25-octaazatricyclo[29.3.0.0^{12,16}]tetratriacontan-27-yl]carbamoyl}-2-hydroxyethyl]carbamoyl}propanoic acid
Traditional Name(3S)-3-amino-3-{[(1S)-1-{[(3E,6S,9R,12R,13R,21R,24R,27S,28R,31R,32S)-13,32-dihydroxy-9-[(1S)-1-hydroxy-2-methylpropyl]-24-[(1R)-1-hydroxyethyl]-6-[(1S)-1-(1H-indol-3-yl)ethyl]-3-(1H-indol-3-ylmethylidene)-21,28-dimethyl-2,5,8,11,17,20,23,26,30-nonaoxo-29-oxa-1,4,7,10,16,19,22,25-octaazatricyclo[29.3.0.0^{12,16}]tetratriacontan-27-yl]carbamoyl}-2-hydroxyethyl]carbamoyl}propanoic acid
CAS Registry NumberNot Available
SMILES
CC(C)C(O)C1NC(=O)C2C(O)CCN2C(=O)CNC(=O)C(C)NC(=O)C(NC(=O)C(NC(=O)C(CO)NC(=O)C(N)CC(O)=O)C(C)OC(=O)C2C(O)CCN2C(=O)\C(NC(=O)C(NC1=O)C(C)C1=CNC2=CC=CC=C12)=C/C1=CNC2=CC=CC=C12)C(C)O
InChI Identifier
InChI=1S/C59H77N13O19/c1-25(2)49(80)46-56(87)67-43(26(3)33-22-62-36-14-10-8-12-32(33)36)53(84)65-37(19-30-21-61-35-13-9-7-11-31(30)35)58(89)72-18-16-40(76)48(72)59(90)91-29(6)45(69-52(83)38(24-73)66-51(82)34(60)20-42(78)79)55(86)68-44(28(5)74)54(85)64-27(4)50(81)63-23-41(77)71-17-15-39(75)47(71)57(88)70-46/h7-14,19,21-22,25-29,34,38-40,43-49,61-62,73-76,80H,15-18,20,23-24,60H2,1-6H3,(H,63,81)(H,64,85)(H,65,84)(H,66,82)(H,67,87)(H,68,86)(H,69,83)(H,70,88)(H,78,79)/b37-19+
InChI KeyJPKJEQMJEKKOJN-SAEPALGJSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.85ALOGPS
logP-8.8ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)3.37ChemAxon
pKa (Strongest Basic)8.22ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count17ChemAxon
Polar Surface Area495.77 ŲChemAxon
Rotatable Bond Count13ChemAxon
Refractivity315.41 m³·mol⁻¹ChemAxon
Polarizability128.73 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA020258
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78444436
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139588767
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Wei S, Zhang W, Ji Z: Structure and Antibacterial Activity of Ambobactin, a New Telomycin-Like Cyclic Depsipeptide Antibiotic Produced by Streptomyces ambofaciens F3. Molecules. 2015 Sep 9;20(9):16278-89. doi: 10.3390/molecules200916278. [PubMed:26370952 ]