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Record Information
Version1.0
Created at2021-01-05 23:06:40 UTC
Updated at2021-07-15 17:15:30 UTC
NP-MRD IDNP0013802
Secondary Accession NumbersNone
Natural Product Identification
Common NameMicrobacterin A
Provided ByNPAtlasNPAtlas Logo
Description Microbacterin A is found in Microbacterium and Microbacterium sediminis. It was first documented in 2015 (PMID: 25675340). Based on a literature review very few articles have been published on Microbacterin A.
Structure
Thumb
Synonyms
ValueSource
(2S)-2-[(3-{[(2R)-2-{[(2S)-2-[(3-{[(2R)-1,2-dihydroxy-3-{[(2S)-1-hydroxy-2-({hydroxy[(2S)-1-[(2R)-2-{[(2S)-1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[(2S)-1-hydroxy-2-({hydroxy[(2S)-1-{2-[(1-hydroxyethylidene)amino]-2-methylpropanoyl}pyrrolidin-2-yl]methylidene}amino)propylidene]amino}-2-methylpropylidene)amino]-2-methylpropylidene}amino)-3-phenylpropylidene]amino}-2-methylbutanoyl]pyrrolidin-2-yl]methylidene}amino)propylidene]amino}-3-methylbutylidene]amino}-1-hydroxypropylidene)amino]-1-hydroxy-4-methylpentylidene]amino}-1-hydroxy-2-methylbutylidene]amino}-1-hydroxypropylidene)amino]-N-{1-[(1-{[(1S)-1-({2-[(2-hydroxyethyl)-C-hydroxycarbonimidoyl]ethyl}-C-hydroxycarbonimidoyl)-3-methylbutyl]-C-hydroxycarbonimidoyl}-1-methylethyl)-C-hydroxycarbonimidoyl]-1-methylethyl}-4-methylpentanimidateGenerator
Chemical FormulaC91H152N20O22
Average Mass1878.3350 Da
Monoisotopic Mass1877.13901 Da
IUPAC Name2-{3-[(2R)-2-[(2S)-2-{3-[(2R)-3-[(2S)-2-{[(2S)-1-[(2R)-2-[(2S)-2-(2-{2-[(2S)-2-{[(2S)-1-(2-acetamido-2-methylpropanoyl)pyrrolidin-2-yl]formamido}propanamido]-2-methylpropanamido}-2-methylpropanamido)-3-phenylpropanamido]-2-methylbutanoyl]pyrrolidin-2-yl]formamido}propanamido]-2-hydroxy-3-methylbutanamido]propanamido}-4-methylpentanamido]-2-methylbutanamido]propanamido}-N-{1-[(1-{[(1S)-1-({2-[(2-hydroxyethyl)carbamoyl]ethyl}carbamoyl)-3-methylbutyl]carbamoyl}-1-methylethyl)carbamoyl]-1-methylethyl}-4-methylpentanamide
Traditional Name2-{3-[(2R)-2-[(2S)-2-{3-[(2R)-3-[(2S)-2-{[(2S)-1-[(2R)-2-[(2S)-2-(2-{2-[(2S)-2-{[(2S)-1-(2-acetamido-2-methylpropanoyl)pyrrolidin-2-yl]formamido}propanamido]-2-methylpropanamido}-2-methylpropanamido)-3-phenylpropanamido]-2-methylbutanoyl]pyrrolidin-2-yl]formamido}propanamido]-2-hydroxy-3-methylbutanamido]propanamido}-4-methylpentanamido]-2-methylbutanamido]propanamido}-N-{1-[(1-{[(1S)-1-({2-[(2-hydroxyethyl)carbamoyl]ethyl}carbamoyl)-3-methylbutyl]carbamoyl}-1-methylethyl)carbamoyl]-1-methylethyl}-4-methylpentanamide
CAS Registry NumberNot Available
SMILES
CC[C@@](C)(NC(=O)[C@H](CC(C)C)NC(=O)CCNC(=O)[C@H](O)C(C)(C)NC(=O)[C@H](C)NC(=O)[C@@H]1CCCN1C(=O)[C@@](C)(CC)NC(=O)[C@H](CC1=CC=CC=C1)NC(=O)C(C)(C)NC(=O)C(C)(C)NC(=O)[C@H](C)NC(=O)[C@@H]1CCCN1C(=O)C(C)(C)NC(C)=O)C(=O)NCCC(=O)N[C@@H](CC(C)C)C(=O)NC(C)(C)C(=O)NC(C)(C)C(=O)N[C@@H](CC(C)C)C(=O)NCCC(=O)NCCO
InChI Identifier
InChI=1S/C91H152N20O22/c1-26-90(24,81(131)95-42-39-66(116)98-59(48-52(5)6)71(121)105-88(20,21)80(130)109-85(14,15)77(127)100-58(47-51(3)4)70(120)93-40-37-64(114)92-43-46-112)106-72(122)60(49-53(7)8)99-65(115)38-41-94-76(126)67(117)84(12,13)103-68(118)54(9)96-75(125)63-36-32-45-111(63)83(133)91(25,27-2)107-73(123)61(50-57-33-29-28-30-34-57)101-78(128)86(16,17)108-79(129)87(18,19)104-69(119)55(10)97-74(124)62-35-31-44-110(62)82(132)89(22,23)102-56(11)113/h28-30,33-34,51-55,58-63,67,112,117H,26-27,31-32,35-50H2,1-25H3,(H,92,114)(H,93,120)(H,94,126)(H,95,131)(H,96,125)(H,97,124)(H,98,116)(H,99,115)(H,100,127)(H,101,128)(H,102,113)(H,103,118)(H,104,119)(H,105,121)(H,106,122)(H,107,123)(H,108,129)(H,109,130)/t54-,55-,58-,59-,60-,61-,62-,63-,67-,90+,91+/m0/s1
InChI KeyZIWFEHAHHMAUGF-NOXNPAQRSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
MicrobacteriumNPAtlas
Microbacterium sediminisLOTUS Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-3ChemAxon
pKa (Strongest Acidic)11.39ChemAxon
pKa (Strongest Basic)-3.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count22ChemAxon
Hydrogen Donor Count20ChemAxon
Polar Surface Area604.88 ŲChemAxon
Rotatable Bond Count52ChemAxon
Refractivity488.58 m³·mol⁻¹ChemAxon
Polarizability201.9 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA020217
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78438691
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139588738
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Liu D, Lin H, Proksch P, Tang X, Shao Z, Lin W: Microbacterins A and B, new peptaibols from the deep sea actinomycete Microbacterium sediminis sp. nov. YLB-01(T). Org Lett. 2015 Mar 6;17(5):1220-3. doi: 10.1021/acs.orglett.5b00172. Epub 2015 Feb 12. [PubMed:25675340 ]