Np mrd loader

Record Information
Version1.0
Created at2021-01-05 21:44:28 UTC
Updated at2021-07-15 17:11:28 UTC
NP-MRD IDNP0012327
Secondary Accession NumbersNone
Natural Product Identification
Common NameMicroviridin N1
Provided ByNPAtlasNPAtlas Logo
DescriptionMicroviridin N belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond. Microviridin N1 is found in Microcystis sp. It was first documented in 2014 (PMID: 24334668). Based on a literature review very few articles have been published on Microviridin N (PMID: 34380192) (PMID: 34380191) (PMID: 34380190) (PMID: 34380189).
Structure
Thumb
Synonyms
ValueSource
2-{[hydroxy(2,5,8,13,20,29,32,39,42-nonahydroxy-38-{[1-hydroxy-2-({hydroxy[1-(1-{2-[(1-hydroxyethylidene)amino]propanoyl}pyrrolidine-2-carbonyl)pyrrolidin-2-yl]methylidene}amino)propylidene]amino}-31-(hydroxymethyl)-4,22-bis[(1H-indol-3-yl)methyl]-7-(3-methoxy-3-oxopropyl)-37-methyl-41-(2-methylpropyl)-23,35-dioxo-36-oxa-3,6,9,14,21,24,30,33,40,43-decaazatricyclo[17.14.10.0,]tritetraconta-2,5,8,13,20,29,32,39,42-nonaen-10-yl)methylidene]amino}-3-(4-hydroxyphenyl)propanoateGenerator
Chemical FormulaC88H116N18O24
Average Mass1809.9980 Da
Monoisotopic Mass1808.84099 Da
IUPAC Name(2S)-2-{[(1S,4S,7R,10S,19S,28S,31R,37R,38R,41S)-38-[(2S)-2-{[(2S)-1-[(2R)-1-[(2R)-2-acetamidopropanoyl]pyrrolidine-2-carbonyl]pyrrolidin-2-yl]formamido}propanamido]-31-(hydroxymethyl)-4,22-bis[(1H-indol-3-yl)methyl]-7-(3-methoxy-3-oxopropyl)-37-methyl-41-(2-methylpropyl)-2,5,8,13,20,23,29,32,35,39,42-undecaoxo-36-oxa-3,6,9,14,21,24,30,33,40,43-decaazatricyclo[17.14.10.0^{24,28}]tritetracontan-10-yl]formamido}-3-(4-hydroxyphenyl)propanoic acid
Traditional Name(2S)-2-{[(1S,4S,7R,10S,19S,28S,31R,37R,38R,41S)-38-[(2S)-2-{[(2S)-1-[(2R)-1-[(2R)-2-acetamidopropanoyl]pyrrolidine-2-carbonyl]pyrrolidin-2-yl]formamido}propanamido]-31-(hydroxymethyl)-4,22-bis(1H-indol-3-ylmethyl)-7-(3-methoxy-3-oxopropyl)-37-methyl-41-(2-methylpropyl)-2,5,8,13,20,23,29,32,35,39,42-undecaoxo-36-oxa-3,6,9,14,21,24,30,33,40,43-decaazatricyclo[17.14.10.0^{24,28}]tritetracontan-10-yl]formamido}-3-(4-hydroxyphenyl)propanoic acid
CAS Registry NumberNot Available
SMILES
COC(=O)CCC1NC(=O)C(CC2=CNC3=CC=CC=C23)NC(=O)C2CC(=O)OC(C)C(NC(=O)C(C)NC(=O)C3CCCN3C(=O)C3CCCN3C(=O)C(C)NC(C)=O)C(=O)NC(CC(C)C)C(=O)NC(CCCCNC(=O)CCC(NC1=O)C(=O)NC(CC1=CC=C(O)C=C1)C(O)=O)C(=O)NC(CC1=CNC3=CC=CC=C13)C(=O)N1CCCC1C(=O)NC(CO)C(=O)N2
InChI Identifier
InChI=1S/C88H116N18O24/c1-45(2)37-61-78(117)94-58-21-12-13-33-89-70(110)31-29-59(77(116)101-65(88(127)128)38-50-25-27-53(109)28-26-50)95-76(115)60(30-32-71(111)129-7)96-79(118)62(39-51-42-90-56-19-10-8-17-54(51)56)97-80(119)63(98-81(120)66(44-107)102-83(122)68-23-14-34-104(68)86(125)64(100-75(58)114)40-52-43-91-57-20-11-9-18-55(52)57)41-72(112)130-48(5)73(84(123)99-61)103-74(113)46(3)93-82(121)67-22-15-35-105(67)87(126)69-24-16-36-106(69)85(124)47(4)92-49(6)108/h8-11,17-20,25-28,42-43,45-48,58-69,73,90-91,107,109H,12-16,21-24,29-41,44H2,1-7H3,(H,89,110)(H,92,108)(H,93,121)(H,94,117)(H,95,115)(H,96,118)(H,97,119)(H,98,120)(H,99,123)(H,100,114)(H,101,116)(H,102,122)(H,103,113)(H,127,128)
InChI KeyBCGKTBJHEZXJFM-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Microcystis sp.NPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassHybrid peptides
Direct ParentHybrid peptides
Alternative Parents
Substituents
  • Cyclic hybrid peptide
  • Tyrosine or derivatives
  • Phenylalanine or derivatives
  • Macrolide
  • N-acyl-alpha-amino acid
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • 3-phenylpropanoic-acid
  • 3-alkylindole
  • Alpha-amino acid or derivatives
  • Amphetamine or derivatives
  • Indole
  • Indole or derivatives
  • Tricarboxylic acid or derivatives
  • Pyrrolidine carboxylic acid or derivatives
  • Pyrrolidine-2-carboxamide
  • N-acylpyrrolidine
  • Phenol
  • 1-hydroxy-2-unsubstituted benzenoid
  • Fatty acid ester
  • Fatty acyl
  • Substituted pyrrole
  • Benzenoid
  • Monocyclic benzene moiety
  • Heteroaromatic compound
  • Cyclic carboximidic acid
  • Methyl ester
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Pyrrole
  • Lactone
  • Lactam
  • Carboxylic acid ester
  • Carboxamide group
  • Carboximidic acid
  • Carboximidic acid derivative
  • Carboxylic acid derivative
  • Oxacycle
  • Carboxylic acid
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Polyol
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Carbonyl group
  • Alcohol
  • Organic nitrogen compound
  • Primary alcohol
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-3.6ChemAxon
pKa (Strongest Acidic)3.56ChemAxon
pKa (Strongest Basic)-6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count22ChemAxon
Hydrogen Donor Count18ChemAxon
Polar Surface Area601.17 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity457.37 m³·mol⁻¹ChemAxon
Polarizability189.1 ųChemAxon
Number of Rings10ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA028884
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID34503841
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound60159565
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Gatte-Picchi D, Weiz A, Ishida K, Hertweck C, Dittmann E: Functional analysis of environmental DNA-derived microviridins provides new insights into the diversity of the tricyclic peptide family. Appl Environ Microbiol. 2014 Feb;80(4):1380-7. doi: 10.1128/AEM.03502-13. Epub 2013 Dec 13. [PubMed:24334668 ]
  2. Kim S, Park KY, Chung J, Kim YB, Lee JW, Huh SK: Comparative Analysis of Feasibility of the Retrograde Suction Decompression Technique for Microsurgical Treatment of Large and Giant Internal Carotid Artery Aneurysms. J Korean Neurosurg Soc. 2021 Aug 12. pii: jkns.2021.0066. doi: 10.3340/jkns.2021.0066. [PubMed:34380192 ]
  3. Bahloul M, Kharrat S, Chtara K, Hafdhi M, Turki O, Baccouche N, Ammar R, Kallel N, Hsairi M, Chakroun-Walha O, Hamida CB, Chelly H, Mahfoudh KB, Karoui A, Karray H, Rekik N, Bouaziz M: Clinical characteristics and outcomes of critically ill COVID-19 patients in Sfax, Tunisia. Acute Crit Care. 2021 Aug 12. pii: acc.2021.00129. doi: 10.4266/acc.2021.00129. [PubMed:34380191 ]
  4. Yi J, Kim KH: Identification and infection control of carbapenem-resistant Enterobacterales in intensive care units. Acute Crit Care. 2021 Aug 12. pii: acc.2021.00409. doi: 10.4266/acc.2021.00409. [PubMed:34380190 ]
  5. Lee Y, Kim SH, Hwang HY, Sohn SH, Choi JW, Kim KH: Perfusion parameters during cardiopulmonary bypass as a predictor of acute kidney injury after aortic valve replacement. Acute Crit Care. 2021 Aug 12. pii: acc.2021.00094. doi: 10.4266/acc.2021.00094. [PubMed:34380189 ]