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Record Information
Version1.0
Created at2021-01-05 20:52:34 UTC
Updated at2021-07-15 17:07:51 UTC
NP-MRD IDNP0011062
Secondary Accession NumbersNone
Natural Product Identification
Common NamePiricyclamide SQWGWRGLSDP
Provided ByNPAtlasNPAtlas Logo
Description Piricyclamide SQWGWRGLSDP is found in Microcystis. It was first documented in 2012 (PMID: 22952627). Based on a literature review very few articles have been published on 2-[(3R,6S,9S,15S,18S,24S,27S,30S,35aS)-18-(3-carbamimidamidopropyl)-1,4,7,10,13,16,19,22,25,28-decahydroxy-6-[2-(C-hydroxycarbonimidoyl)ethyl]-3,27-bis(hydroxymethyl)-9,15-bis[(1H-indol-3-yl)methyl]-24-(2-methylpropyl)-31-oxo-3H,6H,9H,12H,15H,18H,21H,24H,27H,30H,31H,33H,34H,35H,35aH-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31-undecaazacyclotritriacontan-30-yl]acetic acid.
Structure
Thumb
Synonyms
ValueSource
2-[(3R,6S,9S,15S,18S,24S,27S,30S,35AS)-18-(3-carbamimidamidopropyl)-1,4,7,10,13,16,19,22,25,28-decahydroxy-6-[2-(C-hydroxycarbonimidoyl)ethyl]-3,27-bis(hydroxymethyl)-9,15-bis[(1H-indol-3-yl)methyl]-24-(2-methylpropyl)-31-oxo-3H,6H,9H,12H,15H,18H,21H,24H,27H,30H,31H,33H,34H,35H,35ah-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31-undecaazacyclotritriacontan-30-yl]acetateGenerator
Chemical FormulaC58H79N17O16
Average Mass1270.3730 Da
Monoisotopic Mass1269.58907 Da
IUPAC Name2-[(3R,6S,9S,15S,18S,24S,27S,30S,35aS)-6-(2-carbamoylethyl)-18-{3-[(diaminomethylidene)amino]propyl}-3,27-bis(hydroxymethyl)-9,15-bis[(1H-indol-3-yl)methyl]-24-(2-methylpropyl)-1,4,7,10,13,16,19,22,25,28,31-undecaoxo-tetratriacontahydro-1H-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31-undecaazacyclotritriacontan-30-yl]acetic acid
Traditional Name[(3R,6S,9S,15S,18S,24S,27S,30S,35aS)-6-(2-carbamoylethyl)-18-{3-[(diaminomethylidene)amino]propyl}-3,27-bis(hydroxymethyl)-9,15-bis(1H-indol-3-ylmethyl)-24-(2-methylpropyl)-1,4,7,10,13,16,19,22,25,28,31-undecaoxo-tetracosahydropyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31-undecaazacyclotritriacontan-30-yl]acetic acid
CAS Registry NumberNot Available
SMILES
CC(C)C[C@@H]1NC(=O)CNC(=O)[C@H](CCCN=C(N)N)NC(=O)[C@H](CC2=CNC3=CC=CC=C23)NC(=O)CNC(=O)[C@H](CC2=CNC3=CC=CC=C23)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](CO)NC(=O)[C@@H]2CCCN2C(=O)[C@H](CC(O)=O)NC(=O)[C@H](CO)NC1=O
InChI Identifier
InChI=1S/C58H79N17O16/c1-29(2)19-38-52(86)73-42(27-76)55(89)72-41(22-48(81)82)57(91)75-18-8-14-44(75)56(90)74-43(28-77)54(88)70-37(15-16-45(59)78)51(85)71-39(20-30-23-63-34-11-5-3-9-32(30)34)50(84)66-26-47(80)68-40(21-31-24-64-35-12-6-4-10-33(31)35)53(87)69-36(13-7-17-62-58(60)61)49(83)65-25-46(79)67-38/h3-6,9-12,23-24,29,36-44,63-64,76-77H,7-8,13-22,25-28H2,1-2H3,(H2,59,78)(H,65,83)(H,66,84)(H,67,79)(H,68,80)(H,69,87)(H,70,88)(H,71,85)(H,72,89)(H,73,86)(H,74,90)(H,81,82)(H4,60,61,62)/t36-,37-,38-,39-,40-,41-,42-,43+,44-/m0/s1
InChI KeyJZZUYXCMSCYHMW-YSUREIBVSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
MicrocystisNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.74ALOGPS
logP-8.5ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)3.62ChemAxon
pKa (Strongest Basic)11.37ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count18ChemAxon
Polar Surface Area528.14 ŲChemAxon
Rotatable Bond Count17ChemAxon
Refractivity318.93 m³·mol⁻¹ChemAxon
Polarizability130.52 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA028873
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146684888
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Leikoski N, Fewer DP, Jokela J, Alakoski P, Wahlsten M, Sivonen K: Analysis of an inactive cyanobactin biosynthetic gene cluster leads to discovery of new natural products from strains of the genus Microcystis. PLoS One. 2012;7(8):e43002. doi: 10.1371/journal.pone.0043002. Epub 2012 Aug 27. [PubMed:22952627 ]