Np mrd loader

Record Information
Version1.0
Created at2021-01-05 20:52:06 UTC
Updated at2021-07-15 17:07:50 UTC
NP-MRD IDNP0011057
Secondary Accession NumbersNone
Natural Product Identification
Common NamePiricyclamide 7005E3
Provided ByNPAtlasNPAtlas Logo
Description Piricyclamide 7005E3 is found in Microcystis. It was first documented in 2012 (PMID: 22952627). Based on a literature review very few articles have been published on Piricyclamide 7005E3.
Structure
Thumb
Synonyms
ValueSource
3-[(3S,6R,9S,12S,15S,18S,24S,27S,30S,38AS)-9-benzyl-1,4,7,10,13,16,19,22,25,28,31-undecahydroxy-15-[2-(C-hydroxycarbonimidoyl)ethyl]-3-[(C-hydroxycarbonimidoyl)methyl]-18-[(1R)-1-hydroxyethyl]-24,30-bis(hydroxymethyl)-27-[(4-hydroxyphenyl)methyl]-12-[2-(methylsulfanyl)ethyl]-34-oxo-3H,6H,9H,12H,15H,18H,21H,24H,27H,30H,33H,34H,36H,37H,38H,38ah-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31,34-dodecaazacyclohexatriacontan-6-yl]propanoateGenerator
3-[(3S,6R,9S,12S,15S,18S,24S,27S,30S,38AS)-9-benzyl-1,4,7,10,13,16,19,22,25,28,31-undecahydroxy-15-[2-(C-hydroxycarbonimidoyl)ethyl]-3-[(C-hydroxycarbonimidoyl)methyl]-18-[(1R)-1-hydroxyethyl]-24,30-bis(hydroxymethyl)-27-[(4-hydroxyphenyl)methyl]-12-[2-(methylsulphanyl)ethyl]-34-oxo-3H,6H,9H,12H,15H,18H,21H,24H,27H,30H,33H,34H,36H,37H,38H,38ah-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31,34-dodecaazacyclohexatriacontan-6-yl]propanoateGenerator
3-[(3S,6R,9S,12S,15S,18S,24S,27S,30S,38AS)-9-benzyl-1,4,7,10,13,16,19,22,25,28,31-undecahydroxy-15-[2-(C-hydroxycarbonimidoyl)ethyl]-3-[(C-hydroxycarbonimidoyl)methyl]-18-[(1R)-1-hydroxyethyl]-24,30-bis(hydroxymethyl)-27-[(4-hydroxyphenyl)methyl]-12-[2-(methylsulphanyl)ethyl]-34-oxo-3H,6H,9H,12H,15H,18H,21H,24H,27H,30H,33H,34H,36H,37H,38H,38ah-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31,34-dodecaazacyclohexatriacontan-6-yl]propanoic acidGenerator
Chemical FormulaC56H78N14O20S
Average Mass1299.3800 Da
Monoisotopic Mass1298.52375 Da
IUPAC Name3-[(3S,6R,9S,12S,15S,18S,24S,27S,30S,38aS)-9-benzyl-15-(2-carbamoylethyl)-3-(carbamoylmethyl)-18-[(1R)-1-hydroxyethyl]-24,30-bis(hydroxymethyl)-27-[(4-hydroxyphenyl)methyl]-12-[2-(methylsulfanyl)ethyl]-1,4,7,10,13,16,19,22,25,28,31,34-dodecaoxo-octatriacontahydropyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31,34-dodecaazacyclohexatriacontan-6-yl]propanoic acid
Traditional Name3-[(3S,6R,9S,12S,15S,18S,24S,27S,30S,38aS)-9-benzyl-15-(2-carbamoylethyl)-3-(carbamoylmethyl)-18-[(1R)-1-hydroxyethyl]-24,30-bis(hydroxymethyl)-27-[(4-hydroxyphenyl)methyl]-12-[2-(methylsulfanyl)ethyl]-1,4,7,10,13,16,19,22,25,28,31,34-dodecaoxo-hexacosahydropyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31,34-dodecaazacyclohexatriacontan-6-yl]propanoic acid
CAS Registry NumberNot Available
SMILES
CSCC[C@@H]1NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@@H](CCC(O)=O)NC(=O)[C@H](CC(N)=O)NC(=O)[C@@H]2CCCN2C(=O)CNC(=O)[C@H](CO)NC(=O)[C@H](CC2=CC=C(O)C=C2)NC(=O)[C@H](CO)NC(=O)CNC(=O)[C@@H](NC(=O)[C@H](CCC(N)=O)NC1=O)[C@@H](C)O
InChI Identifier
InChI=1S/C56H78N14O20S/c1-28(73)46-56(90)59-24-43(77)61-39(27-72)54(88)66-36(22-30-10-12-31(74)13-11-30)52(86)68-38(26-71)47(81)60-25-44(78)70-19-6-9-40(70)55(89)67-37(23-42(58)76)53(87)63-33(15-17-45(79)80)48(82)65-35(21-29-7-4-3-5-8-29)51(85)64-34(18-20-91-2)49(83)62-32(50(84)69-46)14-16-41(57)75/h3-5,7-8,10-13,28,32-40,46,71-74H,6,9,14-27H2,1-2H3,(H2,57,75)(H2,58,76)(H,59,90)(H,60,81)(H,61,77)(H,62,83)(H,63,87)(H,64,85)(H,65,82)(H,66,88)(H,67,89)(H,68,86)(H,69,84)(H,79,80)/t28-,32+,33-,34+,35+,36+,37+,38+,39+,40+,46+/m1/s1
InChI KeyPNRDFSRRPWPQQW-USHKVLGESA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
MicrocystisNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.6ALOGPS
logP-9.3ChemAxon
logS-3.6ALOGPS
pKa (Strongest Acidic)3.84ChemAxon
pKa (Strongest Basic)-6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count20ChemAxon
Hydrogen Donor Count18ChemAxon
Polar Surface Area544.81 ŲChemAxon
Rotatable Bond Count18ChemAxon
Refractivity314.89 m³·mol⁻¹ChemAxon
Polarizability130.01 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA028868
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146684883
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Leikoski N, Fewer DP, Jokela J, Alakoski P, Wahlsten M, Sivonen K: Analysis of an inactive cyanobactin biosynthetic gene cluster leads to discovery of new natural products from strains of the genus Microcystis. PLoS One. 2012;7(8):e43002. doi: 10.1371/journal.pone.0043002. Epub 2012 Aug 27. [PubMed:22952627 ]