Np mrd loader

Record Information
Version1.0
Created at2021-01-05 20:37:58 UTC
Updated at2021-07-15 17:07:05 UTC
NP-MRD IDNP0010790
Secondary Accession NumbersNone
Natural Product Identification
Common NamePuwainaphycin F
Provided ByNPAtlasNPAtlas Logo
Description Puwainaphycin F is found in Cylindrospermopsis. It was first documented in 2012 (PMID: 22551534). Based on a literature review very few articles have been published on Puwainaphycin F (PMID: 25621379) (PMID: 26893022) (PMID: 25369527).
Structure
Thumb
Synonyms
ValueSource
2-[(7S,10E,13S,16E,19S,22S,25R,28S,33AS)-3-(dodecan-2-yl)-10,16-diethylidene-1,4,5,8,11,14,17,20,23-nonahydroxy-13,19-bis[(C-hydroxycarbonimidoyl)methyl]-25-[(1S)-1-hydroxyethyl]-22,27-dimethyl-26,29-dioxo-7-(propan-2-yl)-3H,4H,7H,10H,13H,16H,19H,22H,25H,26H,27H,28H,29H,31H,32H,33H,33ah-pyrrolo[2,1-c]1,4,7,10,13,16,19,22,25,28-decaazacyclohentriacontan-28-yl]ethanimidateGenerator
Chemical FormulaC53H87N13O15
Average Mass1146.3550 Da
Monoisotopic Mass1145.64446 Da
IUPAC Name2-[(3S,4R,7S,10E,13S,16E,19S,22S,25R,28S,33aS)-19,28-bis(carbamoylmethyl)-3-[(2R)-dodecan-2-yl]-10,16-diethylidene-4-hydroxy-25-[(1S)-1-hydroxyethyl]-22,27-dimethyl-1,5,8,11,14,17,20,23,26,29-decaoxo-7-(propan-2-yl)-dotriacontahydro-1H-pyrrolo[2,1-c]1,4,7,10,13,16,19,22,25,28-decaazacyclohentriacontan-13-yl]acetamide
Traditional Name2-[(3S,4R,7S,10E,13S,16E,19S,22S,25R,28S,33aS)-19,28-bis(carbamoylmethyl)-3-[(2R)-dodecan-2-yl]-10,16-diethylidene-4-hydroxy-25-[(1S)-1-hydroxyethyl]-7-isopropyl-22,27-dimethyl-1,5,8,11,14,17,20,23,26,29-decaoxo-icosahydropyrrolo[2,1-c]1,4,7,10,13,16,19,22,25,28-decaazacyclohentriacontan-13-yl]acetamide
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCC(C)C1NC(=O)[C@@H]2CCCN2C(=O)[C@H](CC(N)=O)N(C)C(=O)[C@H](NC(=O)[C@H](C)NC(=O)[C@H](CC(N)=O)NC(=O)\C(NC(=O)[C@H](CC(N)=O)NC(=O)\C(NC(=O)[C@@H](NC(=O)C1O)C(C)C)=C/C)=C/C)[C@H](C)O
InChI Identifier
InChI=1S/C53H87N13O15/c1-10-13-14-15-16-17-18-19-21-28(6)41-43(71)51(79)62-40(27(4)5)50(78)59-32(12-3)46(74)61-34(25-38(55)69)48(76)58-31(11-2)45(73)60-33(24-37(54)68)47(75)57-29(7)44(72)64-42(30(8)67)53(81)65(9)36(26-39(56)70)52(80)66-23-20-22-35(66)49(77)63-41/h11-12,27-30,33-36,40-43,67,71H,10,13-26H2,1-9H3,(H2,54,68)(H2,55,69)(H2,56,70)(H,57,75)(H,58,76)(H,59,78)(H,60,73)(H,61,74)(H,62,79)(H,63,77)(H,64,72)/b31-11+,32-12+/t28?,29-,30-,33-,34-,35-,36-,40-,41?,42+,43?/m0/s1
InChI KeyOGEPEQGQPSWALS-BMIHFYDPSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
CylindrospermopsisNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.58ALOGPS
logP-4ChemAxon
logS-5.2ALOGPS
pKa (Strongest Acidic)11.36ChemAxon
pKa (Strongest Basic)-3.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count15ChemAxon
Hydrogen Donor Count13ChemAxon
Polar Surface Area443.15 ŲChemAxon
Rotatable Bond Count18ChemAxon
Refractivity292.64 m³·mol⁻¹ChemAxon
Polarizability119.75 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA027370
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146683704
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Hrouzek P, Kuzma M, Cerny J, Novak P, Fiser R, Simek P, Lukesova A, Kopecky J: The cyanobacterial cyclic lipopeptides puwainaphycins F/G are inducing necrosis via cell membrane permeabilization and subsequent unusual actin relocalization. Chem Res Toxicol. 2012 Jun 18;25(6):1203-11. doi: 10.1021/tx300044t. Epub 2012 May 24. [PubMed:22551534 ]
  2. Tomek P, Hrouzek P, Kuzma M, Sykora J, Fiser R, Cerny J, Novak P, Bartova S, Simek P, Hof M, Kavan D, Kopecky J: Cytotoxic Lipopeptide Muscotoxin A, Isolated from Soil Cyanobacterium Desmonostoc muscorum, Permeabilizes Phospholipid Membranes by Reducing Their Fluidity. Chem Res Toxicol. 2015 Feb 16;28(2):216-24. doi: 10.1021/tx500382b. [PubMed:25621379 ]
  3. Urajova P, Hajek J, Wahlsten M, Jokela J, Galica T, Fewer DP, Kust A, Zapomelova-Kozlikova E, Delawska K, Sivonen K, Kopecky J, Hrouzek P: A liquid chromatography-mass spectrometric method for the detection of cyclic beta-amino fatty acid lipopeptides. J Chromatogr A. 2016 Mar 18;1438:76-83. doi: 10.1016/j.chroma.2016.02.013. Epub 2016 Feb 15. [PubMed:26893022 ]
  4. Mares J, Hajek J, Urajova P, Kopecky J, Hrouzek P: A hybrid non-ribosomal peptide/polyketide synthetase containing fatty-acyl ligase (FAAL) synthesizes the beta-amino fatty acid lipopeptides puwainaphycins in the Cyanobacterium Cylindrospermum alatosporum. PLoS One. 2014 Nov 4;9(11):e111904. doi: 10.1371/journal.pone.0111904. eCollection 2014. [PubMed:25369527 ]