Np mrd loader

Record Information
Version1.0
Created at2020-12-09 03:56:50 UTC
Updated at2021-07-15 16:56:30 UTC
NP-MRD IDNP0007046
Secondary Accession NumbersNone
Natural Product Identification
Common NamePlanosporicin
Provided ByNPAtlasNPAtlas Logo
Description3-[(1R,5R,8R,12R,15R,19R,31S,34R,38R,41S,47S,52S,57R,60S,72S)-38-{[(2Z)-2-{[(2S,3S)-2-amino-1-hydroxy-3-methylpentylidene]amino}-1-hydroxybut-2-en-1-ylidene]amino}-12-[(2S)-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]pyrrolidine-1-carbonyl]-6,14,21,24,27,30,33,39,42,45,48,50,58,61,64,65,68,71,74-nonadecahydroxy-60-[(1R)-1-hydroxyethyl]-72-[(1H-imidazol-5-yl)methyl]-47-[(1H-indol-3-yl)methyl]-44-methylidene-41-(propan-2-yl)-3,10,17,36,55-pentathia-7,13,20,23,26,29,32,40,43,46,49,51,59,62,63,66,69,70,73-nonadecaazapentacyclo[32.15.13.5⁵,¹⁹.5⁸,¹⁵.2⁵²,⁵⁷]Tetraheptaconta-6,13,20,23,26,29,32,39,42,45,48,50,58,61,63,65,68,70,73-nonadecaen-31-yl]propanoic acid belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues. Planosporicin is found in Planomonospora alba and Planomonospora sp.. It was first documented in 2007 (PMID: 17469849). Based on a literature review very few articles have been published on 3-[(1R,5R,8R,12R,15R,19R,31S,34R,38R,41S,47S,52S,57R,60S,72S)-38-{[(2Z)-2-{[(2S,3S)-2-amino-1-hydroxy-3-methylpentylidene]amino}-1-hydroxybut-2-en-1-ylidene]amino}-12-[(2S)-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]pyrrolidine-1-carbonyl]-6,14,21,24,27,30,33,39,42,45,48,50,58,61,64,65,68,71,74-nonadecahydroxy-60-[(1R)-1-hydroxyethyl]-72-[(1H-imidazol-5-yl)methyl]-47-[(1H-indol-3-yl)methyl]-44-methylidene-41-(propan-2-yl)-3,10,17,36,55-pentathia-7,13,20,23,26,29,32,40,43,46,49,51,59,62,63,66,69,70,73-nonadecaazapentacyclo[32.15.13.5⁵,¹⁹.5⁸,¹⁵.2⁵²,⁵⁷]Tetraheptaconta-6,13,20,23,26,29,32,39,42,45,48,50,58,61,63,65,68,70,73-nonadecaen-31-yl]propanoic acid (PMID: 26346738) (PMID: 25574687) (PMID: 23776227) (PMID: 23475977) (PMID: 19301921).
Structure
Thumb
Synonyms
ValueSource
3-[(1R,5R,8R,12R,15R,19R,31S,34R,38R,41S,47S,52S,57R,60S,72S)-38-{[(2Z)-2-{[(2S,3S)-2-amino-1-hydroxy-3-methylpentylidene]amino}-1-hydroxybut-2-en-1-ylidene]amino}-12-[(2S)-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]pyrrolidine-1-carbonyl]-6,14,21,24,27,30,33,39,42,45,48,50,58,61,64,65,68,71,74-nonadecahydroxy-60-[(1R)-1-hydroxyethyl]-72-[(1H-imidazol-5-yl)methyl]-47-[(1H-indol-3-yl)methyl]-44-methylidene-41-(propan-2-yl)-3,10,17,36,55-pentathia-7,13,20,23,26,29,32,40,43,46,49,51,59,62,63,66,69,70,73-nonadecaazapentacyclo[32.15.13.5,.5,.2,]tetraheptaconta-6,13,20,23,26,29,32,39,42,45,48,50,58,61,63,65,68,70,73-nonadecaen-31-yl]propanoateGenerator
Lantibiotic 97518MeSH
Chemical FormulaC90H125N27O28S5
Average Mass2193.4500 Da
Monoisotopic Mass2191.77909 Da
IUPAC Name3-[(1R,5R,8R,12R,15R,19R,31S,34R,38R,41S,47S,52S,57R,60S,72S)-38-[(2Z)-2-[(2S,3S)-2-amino-3-methylpentanamido]but-2-enamido]-12-[(2S)-2-[(carboxymethyl)carbamoyl]pyrrolidine-1-carbonyl]-60-[(1R)-1-hydroxyethyl]-72-[(1H-imidazol-5-yl)methyl]-47-[(1H-indol-3-yl)methyl]-44-methylidene-6,14,21,24,27,30,33,39,42,45,48,50,58,61,64,65,68,71,74-nonadecaoxo-41-(propan-2-yl)-3,10,17,36,55-pentathia-7,13,20,23,26,29,32,40,43,46,49,51,59,62,63,66,69,70,73-nonadecaazapentacyclo[32.15.13.5^{5,19}.5^{8,15}.2^{52,57}]tetraheptacontan-31-yl]propanoic acid
Traditional Name3-[(1R,5R,8R,12R,15R,19R,31S,34R,38R,41S,47S,52S,57R,60S,72S)-38-[(2Z)-2-[(2S,3S)-2-amino-3-methylpentanamido]but-2-enamido]-12-[(2S)-2-(carboxymethylcarbamoyl)pyrrolidine-1-carbonyl]-60-[(1R)-1-hydroxyethyl]-72-(3H-imidazol-4-ylmethyl)-47-(1H-indol-3-ylmethyl)-41-isopropyl-44-methylidene-6,14,21,24,27,30,33,39,42,45,48,50,58,61,64,65,68,71,74-nonadecaoxo-3,10,17,36,55-pentathia-7,13,20,23,26,29,32,40,43,46,49,51,59,62,63,66,69,70,73-nonadecaazapentacyclo[32.15.13.5^{5,19}.5^{8,15}.2^{52,57}]tetraheptacontan-31-yl]propanoic acid
CAS Registry NumberNot Available
SMILES
CC[C@H](C)[C@H](N)C(=O)N\C(=C/C)C(=O)N[C@H]1CSC[C@@H]2NC(=O)[C@@H](NC(=O)[C@@H]3CSCC[C@H](NC(=O)[C@H](CSC[C@@H]4NC(=O)CNC(=O)[C@H](CSC[C@@H]5NC(=O)[C@H](CC6=CN=CN6)NC(=O)[C@H](CSC[C@H](NC5=O)C(=O)N5CCC[C@H]5C(=O)NCC(O)=O)NC4=O)NC(=O)CNC(=O)CNC(=O)CNC(=O)[C@H](CCC(O)=O)NC2=O)NC(=O)[C@H](CC2=CNC4=CC=CC=C24)NC(=O)C(=C)NC(=O)[C@@H](NC1=O)C(C)C)C(=O)N3)[C@@H](C)O
InChI Identifier
InChI=1S/C90H125N27O28S5/c1-8-41(5)69(91)87(142)103-47(9-2)75(130)108-60-37-149-36-59-81(136)104-49(16-17-67(123)124)73(128)96-26-64(120)94-25-63(119)95-27-65(121)101-53-31-147-34-58-83(138)114-61(90(145)117-19-12-15-62(117)86(141)98-29-68(125)126)38-150-35-57(82(137)107-52(78(133)111-58)22-45-24-92-39-99-45)112-79(134)54(102-66(122)28-97-74(53)129)32-148-33-56(80(135)105-50-18-20-146-30-55(109-76(50)131)85(140)116-71(43(7)118)89(144)113-59)110-77(132)51(21-44-23-93-48-14-11-10-13-46(44)48)106-72(127)42(6)100-88(143)70(40(3)4)115-84(60)139/h9-11,13-14,23-24,39-41,43,49-62,69-71,93,118H,6,8,12,15-22,25-38,91H2,1-5,7H3,(H,92,99)(H,94,120)(H,95,119)(H,96,128)(H,97,129)(H,98,141)(H,100,143)(H,101,121)(H,102,122)(H,103,142)(H,104,136)(H,105,135)(H,106,127)(H,107,137)(H,108,130)(H,109,131)(H,110,132)(H,111,133)(H,112,134)(H,113,144)(H,114,138)(H,115,139)(H,116,140)(H,123,124)(H,125,126)/b47-9-/t41-,43+,49-,50-,51-,52-,53-,54-,55-,56-,57-,58-,59-,60-,61-,62-,69-,70-,71-/m0/s1
InChI KeyLEODRKCPDOGTPF-BGZBNVMXSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Planomonospora albaLOTUS Database
Planomonospora sp.NPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues.
KingdomOrganic compounds
Super ClassOrganic Polymers
ClassPolypeptides
Sub ClassNot Available
Direct ParentPolypeptides
Alternative Parents
Substituents
  • Polypeptide
  • Cyclic alpha peptide
  • Isoleucine or derivatives
  • Proline or derivatives
  • N-acyl-alpha-amino acid
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • Alpha-amino acid or derivatives
  • 3-alkylindole
  • Indole
  • Indole or derivatives
  • N-acylpyrrolidine
  • Pyrrolidine carboxylic acid or derivatives
  • Pyrrolidine-2-carboxamide
  • Dicarboxylic acid or derivatives
  • Fatty amide
  • N-acyl-amine
  • Fatty acyl
  • Substituted pyrrole
  • Benzenoid
  • Imidazole
  • Pyrrolidine
  • Azole
  • Heteroaromatic compound
  • Pyrrole
  • Tertiary carboxylic acid amide
  • Secondary alcohol
  • Amino acid
  • Lactam
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Amino acid or derivatives
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Dialkylthioether
  • Azacycle
  • Carboxylic acid
  • Thioether
  • Amine
  • Alcohol
  • Organopnictogen compound
  • Organic nitrogen compound
  • Organic oxide
  • Primary aliphatic amine
  • Carbonyl group
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Organooxygen compound
  • Primary amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-19ChemAxon
pKa (Strongest Acidic)3.2ChemAxon
pKa (Strongest Basic)8.21ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count30ChemAxon
Hydrogen Donor Count28ChemAxon
Polar Surface Area825.83 ŲChemAxon
Rotatable Bond Count19ChemAxon
Refractivity536.71 m³·mol⁻¹ChemAxon
Polarizability222.18 ųChemAxon
Number of Rings9ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA012987
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78437815
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139586698
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Castiglione F, Cavaletti L, Losi D, Lazzarini A, Carrano L, Feroggio M, Ciciliato I, Corti E, Candiani G, Marinelli F, Selva E: A novel lantibiotic acting on bacterial cell wall synthesis produced by the uncommon actinomycete Planomonospora sp. Biochemistry. 2007 May 22;46(20):5884-95. doi: 10.1021/bi700131x. Epub 2007 May 1. [PubMed:17469849 ]
  2. Carrano L, Abbondi M, Turconi P, Candiani G, Marinelli F: A Novel Microbisporicin Producer Identified by Early Dereplication during Lantibiotic Screening. Biomed Res Int. 2015;2015:419383. doi: 10.1155/2015/419383. Epub 2015 Aug 4. [PubMed:26346738 ]
  3. Maffioli SI, Monciardini P, Catacchio B, Mazzetti C, Munch D, Brunati C, Sahl HG, Donadio S: Family of class I lantibiotics from actinomycetes and improvement of their antibacterial activities. ACS Chem Biol. 2015 Apr 17;10(4):1034-42. doi: 10.1021/cb500878h. Epub 2015 Jan 23. [PubMed:25574687 ]
  4. Sherwood EJ, Bibb MJ: The antibiotic planosporicin coordinates its own production in the actinomycete Planomonospora alba. Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):E2500-9. doi: 10.1073/pnas.1305392110. Epub 2013 Jun 17. [PubMed:23776227 ]
  5. Sherwood EJ, Hesketh AR, Bibb MJ: Cloning and analysis of the planosporicin lantibiotic biosynthetic gene cluster of Planomonospora alba. J Bacteriol. 2013 May;195(10):2309-21. doi: 10.1128/JB.02291-12. Epub 2013 Mar 8. [PubMed:23475977 ]
  6. Maffioli SI, Potenza D, Vasile F, De Matteo M, Sosio M, Marsiglia B, Rizzo V, Scolastico C, Donadio S: Structure revision of the lantibiotic 97518. J Nat Prod. 2009 Apr;72(4):605-7. doi: 10.1021/np800794y. [PubMed:19301921 ]