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Record Information
Version1.0
Created at2020-12-09 03:25:10 UTC
Updated at2021-07-15 16:54:40 UTC
NP-MRD IDNP0006390
Secondary Accession NumbersNone
Natural Product Identification
Common NameCulicinin D
Provided ByNPAtlasNPAtlas Logo
Description Culicinin D is found in Culicinomyces and Culicinomyces clavisporus LL-12I252. It was first documented in 2006 (PMID: 16724832). Based on a literature review very few articles have been published on (2S)-2-({[(2S)-1-butanoylpyrrolidin-2-yl](hydroxy)methylidene}amino)-6-hydroxy-N-{1-[(1-{[(1R)-1-{[(1S)-1-[(1-{[(1S)-1-{[2-({1-[(2-hydroxyethyl)amino]propan-2-yl}-C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}-3-methylbutyl]-C-hydroxycarbonimidoyl}-1-methylethyl)-C-hydroxycarbonimidoyl]-3-methylbutyl]-C-hydroxycarbonimidoyl}-3-methylnonyl]-C-hydroxycarbonimidoyl}-1-methylethyl)-C-hydroxycarbonimidoyl]-1-methylethyl}-4-methyl-8-oxodecanimidic acid (PMID: 32631536) (PMID: 32229061) (PMID: 31152989) (PMID: 26252224).
Structure
Thumb
Synonyms
ValueSource
(2S)-2-({[(2S)-1-butanoylpyrrolidin-2-yl](hydroxy)methylidene}amino)-6-hydroxy-N-{1-[(1-{[(1R)-1-{[(1S)-1-[(1-{[(1S)-1-{[2-({1-[(2-hydroxyethyl)amino]propan-2-yl}-C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}-3-methylbutyl]-C-hydroxycarbonimidoyl}-1-methylethyl)-C-hydroxycarbonimidoyl]-3-methylbutyl]-C-hydroxycarbonimidoyl}-3-methylnonyl]-C-hydroxycarbonimidoyl}-1-methylethyl)-C-hydroxycarbonimidoyl]-1-methylethyl}-4-methyl-8-oxodecanimidateGenerator
Chemical FormulaC63H115N11O13
Average Mass1234.6770 Da
Monoisotopic Mass1233.86758 Da
IUPAC Name(2S,4R,6R)-2-{[(2S)-1-butanoylpyrrolidin-2-yl]formamido}-6-hydroxy-N-{1-[(1-{[(1R,3R)-1-{[(1S)-1-[(1-{[(1S)-1-[(2-{[(2S)-1-[(2-hydroxyethyl)amino]propan-2-yl]carbamoyl}ethyl)carbamoyl]-3-methylbutyl]carbamoyl}-1-methylethyl)carbamoyl]-3-methylbutyl]carbamoyl}-3-methylnonyl]carbamoyl}-1-methylethyl)carbamoyl]-1-methylethyl}-4-methyl-8-oxodecanamide
Traditional Name(2S,4R,6R)-2-{[(2S)-1-butanoylpyrrolidin-2-yl]formamido}-6-hydroxy-N-{1-[(1-{[(1R,3R)-1-{[(1S)-1-[(1-{[(1S)-1-[(2-{[(2S)-1-[(2-hydroxyethyl)amino]propan-2-yl]carbamoyl}ethyl)carbamoyl]-3-methylbutyl]carbamoyl}-1-methylethyl)carbamoyl]-3-methylbutyl]carbamoyl}-3-methylnonyl]carbamoyl}-1-methylethyl)carbamoyl]-1-methylethyl}-4-methyl-8-oxodecanamide
CAS Registry NumberNot Available
SMILES
CCCCCCC(C)C[C@@H](NC(=O)C(C)(C)NC(=O)C(C)(C)NC(=O)[C@H](CC(C)CC(O)CC(=O)CC)NC(=O)[C@@H]1CCCN1C(=O)CCC)C(=O)N[C@@H](CC(C)C)C(=O)NC(C)(C)C(=O)N[C@@H](CC(C)C)C(=O)NCCC(=O)NC(C)CNCCO
InChI Identifier
InChI=1S/C63H115N11O13/c1-17-20-21-22-25-41(8)35-48(54(81)67-47(33-40(6)7)55(82)71-61(11,12)58(85)69-46(32-39(4)5)53(80)65-28-27-51(78)66-43(10)38-64-29-31-75)70-59(86)62(13,14)73-60(87)63(15,16)72-56(83)49(36-42(9)34-45(77)37-44(76)19-3)68-57(84)50-26-23-30-74(50)52(79)24-18-2/h39-43,45-50,64,75,77H,17-38H2,1-16H3,(H,65,80)(H,66,78)(H,67,81)(H,68,84)(H,69,85)(H,70,86)(H,71,82)(H,72,83)(H,73,87)/t41?,42?,43?,45?,46-,47-,48+,49-,50-/m0/s1
InChI KeyCFLQJUVAEKRCNF-MDGXLCHUSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
CulicinomycesNPAtlas
Culicinomyces clavisporus LL-12I252-
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.18ALOGPS
logP3.16ChemAxon
logS-5.1ALOGPS
pKa (Strongest Acidic)11.58ChemAxon
pKa (Strongest Basic)9.18ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count14ChemAxon
Hydrogen Donor Count12ChemAxon
Polar Surface Area351.77 ŲChemAxon
Rotatable Bond Count43ChemAxon
Refractivity332.6 m³·mol⁻¹ChemAxon
Polarizability139.94 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA017072
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID24710334
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44583847
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. He H, Janso JE, Yang HY, Bernan VS, Lin SL, Yu K: Culicinin D, an antitumor peptaibol produced by the fungus Culicinomyces clavisporus, strain LL-12I252. J Nat Prod. 2006 May;69(5):736-41. doi: 10.1021/np058133r. [PubMed:16724832 ]
  2. Li FF, Stubbing LA, Kavianinia I, Abbattista MR, Harris PWR, Smaill JB, Patterson AV, Brimble MA: Synthesis and antiproliferative activity of C- and N-terminal analogues of culicinin D. Bioorg Med Chem Lett. 2020 Aug 15;30(16):127331. doi: 10.1016/j.bmcl.2020.127331. Epub 2020 Jun 9. [PubMed:32631536 ]
  3. Kavianinia I, Stubbing LA, Abbattista MR, Harris PWR, Smaill JB, Patterson AV, Brimble MA: Alanine scan-guided synthesis and biological evaluation of analogues of culicinin D, a potent anticancer peptaibol. Bioorg Med Chem Lett. 2020 Jun 1;30(11):127135. doi: 10.1016/j.bmcl.2020.127135. Epub 2020 Mar 23. [PubMed:32229061 ]
  4. Stubbing LA, Kavianinia I, Abbattista MR, Harris PWR, Smaill JB, Patterson AV, Brimble MA: Synthesis and antiproliferative activity of culicinin D analogues containing simplified AHMOD-based residues. Eur J Med Chem. 2019 Sep 1;177:235-246. doi: 10.1016/j.ejmech.2019.05.052. Epub 2019 May 23. [PubMed:31152989 ]
  5. Ko KY, Wagner S, Yang SH, Furkert DP, Brimble MA: Improved Synthesis of the Unnatural Amino Acids AHMOD and AMD, Components of the Anticancer Peptaibol Culicinin D. J Org Chem. 2015 Sep 4;80(17):8631-6. doi: 10.1021/acs.joc.5b01265. Epub 2015 Aug 14. [PubMed:26252224 ]