NP-MRD: Showing NP-Card for Varitriol (NP0004089)

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Record Information

Version

1.0

Created at

2020-12-09 01:35:12 UTC

Updated at

2021-07-15 16:48:12 UTC

NP-MRD ID

NP0004089

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Varitriol

Provided By

NPAtlas

Description

(2S,3R,4S,5R)-2-[(E)-2-[2-(hydroxymethyl)-3-methoxyphenyl]ethenyl]-5-methyloxolane-3,4-diol belongs to the class of organic compounds known as c-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a C-glycosidic bond. Varitriol is found in Emericella variecolor and Emericella. It was first documented in 2002 (PMID: 11908979). Based on a literature review very few articles have been published on (2S,3R,4S,5R)-2-[(E)-2-[2-(hydroxymethyl)-3-methoxyphenyl]ethenyl]-5-methyloxolane-3,4-diol.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118043D          

 40 41  0  0  0  0            999 V2000
   -5.6541    1.5617    0.5854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5825    0.8849    0.2722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8364   -0.0553   -0.2790 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2291   -1.0445   -1.0766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4133   -1.9726   -1.6316 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0727   -1.8857   -1.3506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5795   -0.8828   -0.5174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1280   -0.7251   -0.6249 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6653   -0.7872    0.3822 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1045   -0.6418    0.3621 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5818   -0.3156    1.6564 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9607   -0.3283    1.3353 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7690   -0.0889    2.5655 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9944    0.7566    0.2986 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1001    0.6117   -0.5280 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6948    0.4441   -0.4874 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1223   -0.0865   -1.7277 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4003    0.0318    0.0455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1312    1.2140    0.8670 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3357    0.9847    1.9912 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5993    1.0480    0.7796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5473    2.3259    1.4354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9353    2.2822   -0.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3136   -1.1750   -1.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8373   -2.7725   -2.2814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4093   -2.6067   -1.7864 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2705   -0.4331   -1.6052 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2156   -1.0778    1.3526 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6728   -1.5963    0.1112 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1194   -1.2971    0.8476 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7516   -0.5271    2.4134 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2617   -0.7084    3.3785 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7858    0.9644    2.8390 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9230    1.7663    0.7373 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8875    0.9078    0.0290 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0876    1.3271   -0.6313 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1518   -1.0852   -1.6618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2205    1.7851    0.2280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8249    2.0240    0.8415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0697    1.1732    2.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
  7 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 18  3  1  0  0  0  0
 16 10  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  4 24  1  0  0  0  0
  5 25  1  0  0  0  0
  6 26  1  0  0  0  0
  8 27  1  0  0  0  0
  9 28  1  0  0  0  0
 10 29  1  6  0  0  0
 12 30  1  6  0  0  0
 13 31  1  0  0  0  0
 13 32  1  0  0  0  0
 13 33  1  0  0  0  0
 14 34  1  1  0  0  0
 15 35  1  0  0  0  0
 16 36  1  6  0  0  0
 17 37  1  0  0  0  0
 19 38  1  0  0  0  0
 19 39  1  0  0  0  0
 20 40  1  0  0  0  0
M  END

     RDKit          3D

 40 41  0  0  0  0  0  0  0  0999 V2000
   -5.6541    1.5617    0.5854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5825    0.8849    0.2722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8364   -0.0553   -0.2790 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2291   -1.0445   -1.0766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4133   -1.9726   -1.6316 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0727   -1.8857   -1.3506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5795   -0.8828   -0.5174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1280   -0.7251   -0.6249 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6653   -0.7872    0.3822 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1045   -0.6418    0.3621 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5818   -0.3156    1.6564 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9607   -0.3283    1.3353 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7690   -0.0889    2.5655 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9944    0.7566    0.2986 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1001    0.6117   -0.5280 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6948    0.4441   -0.4874 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1223   -0.0865   -1.7277 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4003    0.0318    0.0455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1312    1.2140    0.8670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3357    0.9847    1.9912 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5993    1.0480    0.7796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5473    2.3259    1.4354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9353    2.2822   -0.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3136   -1.1750   -1.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8373   -2.7725   -2.2814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4093   -2.6067   -1.7864 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2705   -0.4331   -1.6052 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2156   -1.0778    1.3526 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6728   -1.5963    0.1112 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1194   -1.2971    0.8476 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7516   -0.5271    2.4134 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2617   -0.7084    3.3785 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7858    0.9644    2.8390 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9230    1.7663    0.7373 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8875    0.9078    0.0290 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0876    1.3271   -0.6313 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1518   -1.0852   -1.6618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2205    1.7851    0.2280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8249    2.0240    0.8415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0697    1.1732    2.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
  7 18  2  0
 18 19  1  0
 19 20  1  0
 18  3  1  0
 16 10  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  4 24  1  0
  5 25  1  0
  6 26  1  0
  8 27  1  0
  9 28  1  0
 10 29  1  6
 12 30  1  6
 13 31  1  0
 13 32  1  0
 13 33  1  0
 14 34  1  1
 15 35  1  0
 16 36  1  6
 17 37  1  0
 19 38  1  0
 19 39  1  0
 20 40  1  0
M  END


  Mrv1652306242118043D          

 40 41  0  0  0  0            999 V2000
   -5.6541    1.5617    0.5854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5825    0.8849    0.2722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8364   -0.0553   -0.2790 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2291   -1.0445   -1.0766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4133   -1.9726   -1.6316 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0727   -1.8857   -1.3506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5795   -0.8828   -0.5174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1280   -0.7251   -0.6249 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6653   -0.7872    0.3822 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1045   -0.6418    0.3621 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5818   -0.3156    1.6564 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9607   -0.3283    1.3353 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7690   -0.0889    2.5655 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9944    0.7566    0.2986 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1001    0.6117   -0.5280 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6948    0.4441   -0.4874 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1223   -0.0865   -1.7277 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4003    0.0318    0.0455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1312    1.2140    0.8670 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3357    0.9847    1.9912 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5993    1.0480    0.7796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5473    2.3259    1.4354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9353    2.2822   -0.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3136   -1.1750   -1.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8373   -2.7725   -2.2814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4093   -2.6067   -1.7864 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2705   -0.4331   -1.6052 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2156   -1.0778    1.3526 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6728   -1.5963    0.1112 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1194   -1.2971    0.8476 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7516   -0.5271    2.4134 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2617   -0.7084    3.3785 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7858    0.9644    2.8390 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9230    1.7663    0.7373 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8875    0.9078    0.0290 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0876    1.3271   -0.6313 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1518   -1.0852   -1.6618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2205    1.7851    0.2280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8249    2.0240    0.8415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0697    1.1732    2.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
  7 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 18  3  1  0  0  0  0
 16 10  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  4 24  1  0  0  0  0
  5 25  1  0  0  0  0
  6 26  1  0  0  0  0
  8 27  1  0  0  0  0
  9 28  1  0  0  0  0
 10 29  1  6  0  0  0
 12 30  1  6  0  0  0
 13 31  1  0  0  0  0
 13 32  1  0  0  0  0
 13 33  1  0  0  0  0
 14 34  1  1  0  0  0
 15 35  1  0  0  0  0
 16 36  1  6  0  0  0
 17 37  1  0  0  0  0
 19 38  1  0  0  0  0
 19 39  1  0  0  0  0
 20 40  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0004089

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])C1=C(\C([H])=C(/[H])[C@]2([H])O[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])[C@@]2([H])O[H])C([H])=C([H])C([H])=C1OC([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O5/c1-9-14(17)15(18)13(20-9)7-6-10-4-3-5-12(19-2)11(10)8-16/h3-7,9,13-18H,8H2,1-2H3/b7-6+/t9-,13+,14-,15+/m1/s1

> <INCHI_KEY>
JGUADRHIBCXAFH-MVBSPKBLSA-N

> <FORMULA>
C15H20O5

> <MOLECULAR_WEIGHT>
280.32

> <EXACT_MASS>
280.131073744

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
30.72272776038928

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3R,4S,5R)-2-[(E)-2-[2-(hydroxymethyl)-3-methoxyphenyl]ethenyl]-5-methyloxolane-3,4-diol

> <ALOGPS_LOGP>
0.76

> <JCHEM_LOGP>
0.5780644600000002

> <ALOGPS_LOGS>
-2.30

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.095130433105936

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.804489852208363

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9635568704032567

> <JCHEM_POLAR_SURFACE_AREA>
79.15

> <JCHEM_REFRACTIVITY>
75.2678

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.42e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5R)-2-[(E)-2-[2-(hydroxymethyl)-3-methoxyphenyl]ethenyl]-5-methyloxolane-3,4-diol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 40 41  0  0  0  0  0  0  0  0999 V2000
   -5.6541    1.5617    0.5854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5825    0.8849    0.2722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8364   -0.0553   -0.2790 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2291   -1.0445   -1.0766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4133   -1.9726   -1.6316 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0727   -1.8857   -1.3506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5795   -0.8828   -0.5174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1280   -0.7251   -0.6249 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6653   -0.7872    0.3822 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1045   -0.6418    0.3621 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5818   -0.3156    1.6564 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9607   -0.3283    1.3353 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7690   -0.0889    2.5655 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9944    0.7566    0.2986 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1001    0.6117   -0.5280 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6948    0.4441   -0.4874 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1223   -0.0865   -1.7277 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4003    0.0318    0.0455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1312    1.2140    0.8670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3357    0.9847    1.9912 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5993    1.0480    0.7796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5473    2.3259    1.4354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9353    2.2822   -0.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3136   -1.1750   -1.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8373   -2.7725   -2.2814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4093   -2.6067   -1.7864 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2705   -0.4331   -1.6052 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2156   -1.0778    1.3526 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6728   -1.5963    0.1112 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1194   -1.2971    0.8476 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7516   -0.5271    2.4134 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2617   -0.7084    3.3785 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7858    0.9644    2.8390 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9230    1.7663    0.7373 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8875    0.9078    0.0290 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0876    1.3271   -0.6313 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1518   -1.0852   -1.6618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2205    1.7851    0.2280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8249    2.0240    0.8415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0697    1.1732    2.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
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  2  3  1  0
  3  4  2  0
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 19 38  1  0
 19 39  1  0
 20 40  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -5.654   1.562   0.585  0.00  0.00           C+0
HETATM    2  O   UNK     0      -4.582   0.885   0.272  0.00  0.00           O+0
HETATM    3  C   UNK     0      -3.836  -0.055  -0.279  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.229  -1.044  -1.077  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.413  -1.973  -1.632  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.073  -1.886  -1.351  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.579  -0.883  -0.517  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.128  -0.725  -0.625  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.665  -0.787   0.382  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.104  -0.642   0.362  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.582  -0.316   1.656  0.00  0.00           O+0
HETATM   12  C   UNK     0       3.961  -0.328   1.335  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.769  -0.089   2.566  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.994   0.757   0.299  0.00  0.00           C+0
HETATM   15  O   UNK     0       5.100   0.612  -0.528  0.00  0.00           O+0
HETATM   16  C   UNK     0       2.695   0.444  -0.487  0.00  0.00           C+0
HETATM   17  O   UNK     0       3.122  -0.087  -1.728  0.00  0.00           O+0
HETATM   18  C   UNK     0      -2.400   0.032   0.046  0.00  0.00           C+0
HETATM   19  C   UNK     0      -2.131   1.214   0.867  0.00  0.00           C+0
HETATM   20  O   UNK     0      -1.336   0.985   1.991  0.00  0.00           O+0
HETATM   21  H   UNK     0      -6.599   1.048   0.780  0.00  0.00           H+0
HETATM   22  H   UNK     0      -5.547   2.326   1.435  0.00  0.00           H+0
HETATM   23  H   UNK     0      -5.935   2.282  -0.335  0.00  0.00           H+0
HETATM   24  H   UNK     0      -5.314  -1.175  -1.335  0.00  0.00           H+0
HETATM   25  H   UNK     0      -3.837  -2.773  -2.281  0.00  0.00           H+0
HETATM   26  H   UNK     0      -1.409  -2.607  -1.786  0.00  0.00           H+0
HETATM   27  H   UNK     0       0.271  -0.433  -1.605  0.00  0.00           H+0
HETATM   28  H   UNK     0       0.216  -1.078   1.353  0.00  0.00           H+0
HETATM   29  H   UNK     0       2.673  -1.596   0.111  0.00  0.00           H+0
HETATM   30  H   UNK     0       4.119  -1.297   0.848  0.00  0.00           H+0
HETATM   31  H   UNK     0       5.752  -0.527   2.413  0.00  0.00           H+0
HETATM   32  H   UNK     0       4.262  -0.708   3.378  0.00  0.00           H+0
HETATM   33  H   UNK     0       4.786   0.964   2.839  0.00  0.00           H+0
HETATM   34  H   UNK     0       3.923   1.766   0.737  0.00  0.00           H+0
HETATM   35  H   UNK     0       5.888   0.908   0.029  0.00  0.00           H+0
HETATM   36  H   UNK     0       2.088   1.327  -0.631  0.00  0.00           H+0
HETATM   37  H   UNK     0       3.152  -1.085  -1.662  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.220   1.785   0.228  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.825   2.024   0.842  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.070   1.173   2.756  0.00  0.00           H+0
CONECT    1    2   21   22   23                                             
CONECT    2    1    3                                                       
CONECT    3    2    4   18                                                  
CONECT    4    3    5   24                                                  
CONECT    5    4    6   25                                                  
CONECT    6    5    7   26                                                  
CONECT    7    6    8   18                                                  
CONECT    8    7    9   27                                                  
CONECT    9    8   10   28                                                  
CONECT   10    9   11   16   29                                             
CONECT   11   10   12                                                       
CONECT   12   11   13   14   30                                             
CONECT   13   12   31   32   33                                             
CONECT   14   12   15   16   34                                             
CONECT   15   14   35                                                       
CONECT   16   14   17   10   36                                             
CONECT   17   16   37                                                       
CONECT   18    7   19    3                                                  
CONECT   19   18   20   38   39                                             
CONECT   20   19   40                                                       
CONECT   21    1                                                            
CONECT   22    1                                                            
CONECT   23    1                                                            
CONECT   24    4                                                            
CONECT   25    5                                                            
CONECT   26    6                                                            
CONECT   27    8                                                            
CONECT   28    9                                                            
CONECT   29   10                                                            
CONECT   30   12                                                            
CONECT   31   13                                                            
CONECT   32   13                                                            
CONECT   33   13                                                            
CONECT   34   14                                                            
CONECT   35   15                                                            
CONECT   36   16                                                            
CONECT   37   17                                                            
CONECT   38   19                                                            
CONECT   39   19                                                            
CONECT   40   20                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   82    0
END

RDKit          3D

40 41  0  0  0  0  0  0  0  0999 V2000
   -5.6541    1.5617    0.5854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5825    0.8849    0.2722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8364   -0.0553   -0.2790 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2291   -1.0445   -1.0766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4133   -1.9726   -1.6316 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0727   -1.8857   -1.3506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5795   -0.8828   -0.5174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1280   -0.7251   -0.6249 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6653   -0.7872    0.3822 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1045   -0.6418    0.3621 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5818   -0.3156    1.6564 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9607   -0.3283    1.3353 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7690   -0.0889    2.5655 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9944    0.7566    0.2986 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1001    0.6117   -0.5280 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6948    0.4441   -0.4874 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1223   -0.0865   -1.7277 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4003    0.0318    0.0455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1312    1.2140    0.8670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3357    0.9847    1.9912 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5993    1.0480    0.7796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5473    2.3259    1.4354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9353    2.2822   -0.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3136   -1.1750   -1.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8373   -2.7725   -2.2814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4093   -2.6067   -1.7864 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2705   -0.4331   -1.6052 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2156   -1.0778    1.3526 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6728   -1.5963    0.1112 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1194   -1.2971    0.8476 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7516   -0.5271    2.4134 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2617   -0.7084    3.3785 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7858    0.9644    2.8390 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9230    1.7663    0.7373 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8875    0.9078    0.0290 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0876    1.3271   -0.6313 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1518   -1.0852   -1.6618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2205    1.7851    0.2280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8249    2.0240    0.8415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0697    1.1732    2.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
  7 18  2  0
 18 19  1  0
 19 20  1  0
 18  3  1  0
 16 10  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  4 24  1  0
  5 25  1  0
  6 26  1  0
  8 27  1  0
  9 28  1  0
 10 29  1  6
 12 30  1  6
 13 31  1  0
 13 32  1  0
 13 33  1  0
 14 34  1  1
 15 35  1  0
 16 36  1  6
 17 37  1  0
 19 38  1  0
 19 39  1  0
 20 40  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₅H₂₀O₅

Average Mass

280.3200 Da

Monoisotopic Mass

280.13107 Da

IUPAC Name

(2S,3R,4S,5R)-2-[(E)-2-[2-(hydroxymethyl)-3-methoxyphenyl]ethenyl]-5-methyloxolane-3,4-diol

Traditional Name

(2S,3R,4S,5R)-2-[(E)-2-[2-(hydroxymethyl)-3-methoxyphenyl]ethenyl]-5-methyloxolane-3,4-diol

CAS Registry Number

Not Available

SMILES

COC1=CC=CC(\C=C\[C@@H]2O[C@H](C)[C@@H](O)[C@H]2O)=C1CO

InChI Identifier

InChI=1S/C15H20O5/c1-9-14(17)15(18)13(20-9)7-6-10-4-3-5-12(19-2)11(10)8-16/h3-7,9,13-18H,8H2,1-2H3/b7-6+/t9-,13+,14-,15+/m1/s1

InChI Key

JGUADRHIBCXAFH-MVBSPKBLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aspergillus stellatus	-	KNApSAcK
Emericella	NPAtlas	11908979

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as c-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a C-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

C-glycosyl compounds

Alternative Parents

Substituents

C-glycosyl compound
Anisole
Benzyl alcohol
Phenoxy compound
Phenol ether
Styrene
Methoxybenzene
Alkyl aryl ether
Monocyclic benzene moiety
Benzenoid
Oxolane
Secondary alcohol
Ether
Dialkyl ether
Organoheterocyclic compound
Oxacycle
Primary alcohol
Alcohol
Aromatic alcohol
Hydrocarbon derivative
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.76	ALOGPS
logP	0.58	ChemAxon
logS	-2.3	ALOGPS
pKa (Strongest Acidic)	12.8	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	79.15 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	75.27 m³·mol⁻¹	ChemAxon
Polarizability	30.72 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA002318

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9725678

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Malmstrom J, Christophersen C, Barrero AF, Oltra JE, Justicia J, Rosales A: Bioactive metabolites from a marine-derived strain of the fungus Emericella variecolor. J Nat Prod. 2002 Mar;65(3):364-7. doi: 10.1021/np0103214. [PubMed:11908979 ]

Showing NP-Card for Varitriol (NP0004089)

MOL for NP0004089 (Varitriol)

3D MOL for NP0004089 (Varitriol)

3D SDF for NP0004089 (Varitriol)

3D-SDF for NP0004089 (Varitriol)

PDB for NP0004089 (Varitriol)

3D PDB for NP0004089 (Varitriol)

SMILES for NP0004089 (Varitriol)

INCHI for NP0004089 (Varitriol)

Structure for NP0004089 (Varitriol)

3D Structure for NP0004089 (Varitriol)