NP-MRD: Showing NP-Card for Serantrypinone (NP0003957)

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Record Information

Version

1.0

Created at

2020-12-09 01:29:29 UTC

Updated at

2021-07-15 16:47:50 UTC

NP-MRD ID

NP0003957

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Serantrypinone

Provided By

NPAtlas

Description

Serantrypinone is found in Penicillium thymicola. It was first documented in 2001 (PMID: 11754624). Based on a literature review very few articles have been published on (1'R,3S,12'R)-2,15'-dihydroxy-12'-(hydroxymethyl)-2',10',16'-triazaspiro[indole-3,13'-tetracyclo[10.2.2.0²,¹¹.0⁴,⁹]Hexadecane]-4',6',8',10',15'-pentaen-3'-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117513D          

 45 50  0  0  0  0            999 V2000
    0.9636   -4.1309   -0.4112 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5687   -2.9668   -0.2531 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0677   -2.4914    0.9524 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -1.0608    0.8308 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0617   -0.5482    2.0711 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2460   -0.6709    3.1882 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8531   -0.3905    0.4799 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4373    0.5948    1.1657 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6146    1.1257    0.7253 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2431    2.1427    1.4093 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4426    2.6797    0.9557 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0348    2.2054   -0.1946 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4263    1.2003   -0.8823 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2285    0.6675   -0.4251 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5920   -0.3577   -1.1118 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1156   -0.8043   -2.1630 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4560   -0.8326   -0.6401 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7097   -1.9187   -1.3027 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6171   -1.2881   -1.6609 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3741   -1.0421   -0.3569 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3565   -2.1389   -0.2601 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.9769    2.6216   -0.5577 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  2  0  0  0  0
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  3 30  1  0  0  0  0
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  6 33  1  0  0  0  0
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 13 37  1  0  0  0  0
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 19 40  1  0  0  0  0
 23 41  1  0  0  0  0
 25 42  1  0  0  0  0
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M  END

     RDKit          3D

 45 50  0  0  0  0  0  0  0  0999 V2000
    0.9636   -4.1309   -0.4112 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5687   -2.9668   -0.2531 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0677   -2.4914    0.9524 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -1.0608    0.8308 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0617   -0.5482    2.0711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2460   -0.6709    3.1882 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8531   -0.3905    0.4799 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.4426    2.6797    0.9557 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.2285    0.6675   -0.4251 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.4974   -0.1663   -0.3466 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8410    2.5118   -0.5307 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8722    1.5364   -0.5001 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652306242117513D          

 45 50  0  0  0  0            999 V2000
    0.9636   -4.1309   -0.4112 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5687   -2.9668   -0.2531 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0677   -2.4914    0.9524 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -1.0608    0.8308 C   0  0  1  0  0  0  0  0  0  0  0  0
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  1  2  2  0  0  0  0
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 28 45  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003957

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@]12N([H])C(=O)[C@]([H])(N3C(=O)C4=C([H])C([H])=C([H])C([H])=C4N=C13)C([H])([H])[C@@]21C(=O)N([H])C2=C([H])C([H])=C([H])C([H])=C12

> <INCHI_IDENTIFIER>
InChI=1S/C21H16N4O4/c26-10-21-18-22-13-7-3-1-5-11(13)17(28)25(18)15(16(27)24-21)9-20(21)12-6-2-4-8-14(12)23-19(20)29/h1-8,15,26H,9-10H2,(H,23,29)(H,24,27)/t15-,20-,21+/m1/s1

> <INCHI_KEY>
XDRBDKVSHABELK-LPTQZCDUSA-N

> <FORMULA>
C21H16N4O4

> <MOLECULAR_WEIGHT>
388.383

> <EXACT_MASS>
388.117155011

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
38.22966429929906

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1'R,3S,12'R)-12'-(hydroxymethyl)-1,2-dihydro-2',10',16'-triazaspiro[indole-3,13'-tetracyclo[10.2.2.0^{2,11}.0^{4,9}]hexadecane]-4',6',8',10'-tetraene-2,3',15'-trione

> <ALOGPS_LOGP>
0.68

> <JCHEM_LOGP>
0.33825464100000047

> <ALOGPS_LOGS>
-3.06

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.13839442396624

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.168503246067985

> <JCHEM_PKA_STRONGEST_BASIC>
1.7236736860783193

> <JCHEM_POLAR_SURFACE_AREA>
111.1

> <JCHEM_REFRACTIVITY>
104.7208

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.41e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'R,3S,12'R)-12'-(hydroxymethyl)-1H-2',10',16'-triazaspiro[indole-3,13'-tetracyclo[10.2.2.0^{2,11}.0^{4,9}]hexadecane]-4',6',8',10'-tetraene-2,3',15'-trione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 45 50  0  0  0  0  0  0  0  0999 V2000
    0.9636   -4.1309   -0.4112 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5687   -2.9668   -0.2531 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0677   -2.4914    0.9524 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -1.0608    0.8308 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0617   -0.5482    2.0711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2460   -0.6709    3.1882 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8531   -0.3905    0.4799 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4373    0.5948    1.1657 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6146    1.1257    0.7253 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2431    2.1427    1.4093 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4426    2.6797    0.9557 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0348    2.2054   -0.1946 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4263    1.2003   -0.8823 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2285    0.6675   -0.4251 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5920   -0.3577   -1.1118 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1156   -0.8043   -2.1630 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4560   -0.8326   -0.6401 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7097   -1.9187   -1.3027 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6171   -1.2881   -1.6609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3741   -1.0421   -0.3569 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3565   -2.1389   -0.2601 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1523   -3.3856   -0.1899 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6557   -1.5774   -0.2553 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4974   -0.1663   -0.3466 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5149    0.8016   -0.3752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1692    2.1269   -0.4670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8410    2.5118   -0.5307 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8722    1.5364   -0.5001 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1747    0.1722   -0.4073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2550   -3.0591    1.7744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9523   -1.2031    2.2718 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4785    0.4690    1.9353 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2971    0.1640    3.2447 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7783    2.5084    2.3039 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9180    3.4846    1.5177 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9769    2.6216   -0.5577 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8552    0.7937   -1.7944 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2565   -2.2877   -2.1874 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4373   -0.2758   -2.0903 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2053   -1.9105   -2.3551 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5711   -2.1067   -0.1952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5627    0.5186   -0.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9084    2.9302   -0.4940 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5677    3.5564   -0.6031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8165    1.8026   -0.5483 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  1
  5  6  1  0
  4  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  1
 21 22  2  0
 21 23  1  0
 23 24  1  0
 24 25  2  0
 25 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  2  0
 18  2  1  0
 29 20  1  0
 20  4  1  0
 29 24  1  0
 17  7  1  0
 14  9  1  0
  3 30  1  0
  5 31  1  0
  5 32  1  0
  6 33  1  0
 10 34  1  0
 11 35  1  0
 12 36  1  0
 13 37  1  0
 18 38  1  6
 19 39  1  0
 19 40  1  0
 23 41  1  0
 25 42  1  0
 26 43  1  0
 27 44  1  0
 28 45  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  O   UNK     0       0.964  -4.131  -0.411  0.00  0.00           O+0
HETATM    2  C   UNK     0       0.569  -2.967  -0.253  0.00  0.00           C+0
HETATM    3  N   UNK     0      -0.068  -2.491   0.952  0.00  0.00           N+0
HETATM    4  C   UNK     0      -0.413  -1.061   0.831  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.062  -0.548   2.071  0.00  0.00           C+0
HETATM    6  O   UNK     0      -0.246  -0.671   3.188  0.00  0.00           O+0
HETATM    7  C   UNK     0       0.853  -0.391   0.480  0.00  0.00           C+0
HETATM    8  N   UNK     0       1.437   0.595   1.166  0.00  0.00           N+0
HETATM    9  C   UNK     0       2.615   1.126   0.725  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.243   2.143   1.409  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.443   2.680   0.956  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.035   2.205  -0.195  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.426   1.200  -0.882  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.228   0.668  -0.425  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.592  -0.358  -1.112  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.116  -0.804  -2.163  0.00  0.00           O+0
HETATM   17  N   UNK     0       1.456  -0.833  -0.640  0.00  0.00           N+0
HETATM   18  C   UNK     0       0.710  -1.919  -1.303  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.617  -1.288  -1.661  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.374  -1.042  -0.357  0.00  0.00           C+0
HETATM   21  C   UNK     0      -2.357  -2.139  -0.260  0.00  0.00           C+0
HETATM   22  O   UNK     0      -2.152  -3.386  -0.190  0.00  0.00           O+0
HETATM   23  N   UNK     0      -3.656  -1.577  -0.255  0.00  0.00           N+0
HETATM   24  C   UNK     0      -3.497  -0.166  -0.347  0.00  0.00           C+0
HETATM   25  C   UNK     0      -4.515   0.802  -0.375  0.00  0.00           C+0
HETATM   26  C   UNK     0      -4.169   2.127  -0.467  0.00  0.00           C+0
HETATM   27  C   UNK     0      -2.841   2.512  -0.531  0.00  0.00           C+0
HETATM   28  C   UNK     0      -1.872   1.536  -0.500  0.00  0.00           C+0
HETATM   29  C   UNK     0      -2.175   0.172  -0.407  0.00  0.00           C+0
HETATM   30  H   UNK     0      -0.255  -3.059   1.774  0.00  0.00           H+0
HETATM   31  H   UNK     0      -1.952  -1.203   2.272  0.00  0.00           H+0
HETATM   32  H   UNK     0      -1.478   0.469   1.935  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.297   0.164   3.245  0.00  0.00           H+0
HETATM   34  H   UNK     0       2.778   2.508   2.304  0.00  0.00           H+0
HETATM   35  H   UNK     0       4.918   3.485   1.518  0.00  0.00           H+0
HETATM   36  H   UNK     0       5.977   2.622  -0.558  0.00  0.00           H+0
HETATM   37  H   UNK     0       4.855   0.794  -1.794  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.256  -2.288  -2.187  0.00  0.00           H+0
HETATM   39  H   UNK     0      -0.437  -0.276  -2.090  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.205  -1.911  -2.355  0.00  0.00           H+0
HETATM   41  H   UNK     0      -4.571  -2.107  -0.195  0.00  0.00           H+0
HETATM   42  H   UNK     0      -5.563   0.519  -0.326  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.908   2.930  -0.494  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.568   3.556  -0.603  0.00  0.00           H+0
HETATM   45  H   UNK     0      -0.817   1.803  -0.548  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3   18                                                  
CONECT    3    2    4   30                                                  
CONECT    4    3    5    7   20                                             
CONECT    5    4    6   31   32                                             
CONECT    6    5   33                                                       
CONECT    7    4    8   17                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   14                                                  
CONECT   10    9   11   34                                                  
CONECT   11   10   12   35                                                  
CONECT   12   11   13   36                                                  
CONECT   13   12   14   37                                                  
CONECT   14   13   15    9                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18    7                                                  
CONECT   18   17   19    2   38                                             
CONECT   19   18   20   39   40                                             
CONECT   20   19   21   29    4                                             
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   41                                                  
CONECT   24   23   25   29                                                  
CONECT   25   24   26   42                                                  
CONECT   26   25   27   43                                                  
CONECT   27   26   28   44                                                  
CONECT   28   27   29   45                                                  
CONECT   29   28   20   24                                                  
CONECT   30    3                                                            
CONECT   31    5                                                            
CONECT   32    5                                                            
CONECT   33    6                                                            
CONECT   34   10                                                            
CONECT   35   11                                                            
CONECT   36   12                                                            
CONECT   37   13                                                            
CONECT   38   18                                                            
CONECT   39   19                                                            
CONECT   40   19                                                            
CONECT   41   23                                                            
CONECT   42   25                                                            
CONECT   43   26                                                            
CONECT   44   27                                                            
CONECT   45   28                                                            
MASTER        0    0    0    0    0    0    0    0   45    0  100    0
END

RDKit          3D

45 50  0  0  0  0  0  0  0  0999 V2000
    0.9636   -4.1309   -0.4112 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5687   -2.9668   -0.2531 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0677   -2.4914    0.9524 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -1.0608    0.8308 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0617   -0.5482    2.0711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2460   -0.6709    3.1882 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8531   -0.3905    0.4799 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4373    0.5948    1.1657 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6146    1.1257    0.7253 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2431    2.1427    1.4093 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4426    2.6797    0.9557 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0348    2.2054   -0.1946 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4263    1.2003   -0.8823 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2285    0.6675   -0.4251 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5920   -0.3577   -1.1118 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1156   -0.8043   -2.1630 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4560   -0.8326   -0.6401 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7097   -1.9187   -1.3027 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6171   -1.2881   -1.6609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3741   -1.0421   -0.3569 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3565   -2.1389   -0.2601 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1523   -3.3856   -0.1899 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6557   -1.5774   -0.2553 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4974   -0.1663   -0.3466 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5149    0.8016   -0.3752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1692    2.1269   -0.4670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8410    2.5118   -0.5307 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8722    1.5364   -0.5001 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1747    0.1722   -0.4073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2550   -3.0591    1.7744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9523   -1.2031    2.2718 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4785    0.4690    1.9353 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2971    0.1640    3.2447 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7783    2.5084    2.3039 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9180    3.4846    1.5177 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9769    2.6216   -0.5577 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8552    0.7937   -1.7944 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2565   -2.2877   -2.1874 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4373   -0.2758   -2.0903 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2053   -1.9105   -2.3551 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5711   -2.1067   -0.1952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5627    0.5186   -0.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9084    2.9302   -0.4940 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5677    3.5564   -0.6031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8165    1.8026   -0.5483 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  1
  5  6  1  0
  4  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
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 20 21  1  1
 21 22  2  0
 21 23  1  0
 23 24  1  0
 24 25  2  0
 25 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  2  0
 18  2  1  0
 29 20  1  0
 20  4  1  0
 29 24  1  0
 17  7  1  0
 14  9  1  0
  3 30  1  0
  5 31  1  0
  5 32  1  0
  6 33  1  0
 10 34  1  0
 11 35  1  0
 12 36  1  0
 13 37  1  0
 18 38  1  6
 19 39  1  0
 19 40  1  0
 23 41  1  0
 25 42  1  0
 26 43  1  0
 27 44  1  0
 28 45  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Seran-trypinone	MeSH

Chemical Formula

C₂₁H₁₆N₄O₄

Average Mass

388.3830 Da

Monoisotopic Mass

388.11716 Da

IUPAC Name

(1'R,3S,12'R)-12'-(hydroxymethyl)-1,2-dihydro-2',10',16'-triazaspiro[indole-3,13'-tetracyclo[10.2.2.0^{2,11}.0^{4,9}]hexadecane]-4',6',8',10'-tetraene-2,3',15'-trione

Traditional Name

(1'R,3S,12'R)-12'-(hydroxymethyl)-1H-2',10',16'-triazaspiro[indole-3,13'-tetracyclo[10.2.2.0^{2,11}.0^{4,9}]hexadecane]-4',6',8',10'-tetraene-2,3',15'-trione

CAS Registry Number

Not Available

SMILES

OC[C@@]12NC(=O)[C@@H](C[C@@]11C(=O)NC3=CC=CC=C13)N1C(=O)C3=CC=CC=C3N=C21

InChI Identifier

InChI=1S/C21H16N4O4/c26-10-21-18-22-13-7-3-1-5-11(13)17(28)25(18)15(16(27)24-21)9-20(21)12-6-2-4-8-14(12)23-19(20)29/h1-8,15,26H,9-10H2,(H,23,29)(H,24,27)/t15-,20-,21+/m1/s1

InChI Key

XDRBDKVSHABELK-LPTQZCDUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Penicillium thymicola	NPAtlas	11754624

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.68	ALOGPS
logP	0.34	ChemAxon
logS	-3.1	ALOGPS
pKa (Strongest Acidic)	10.17	ChemAxon
pKa (Strongest Basic)	1.72	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	111.1 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	104.72 m³·mol⁻¹	ChemAxon
Polarizability	38.23 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA002388

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78440052

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139583759

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Romero Ariza M, Larsen TO, Petersen BO, Duus JO, Christophersen C, Barrero AF: A novel alkaloid serantrypinone and the spiro azaphilone daldinin D from Penicillium thymicola. J Nat Prod. 2001 Dec;64(12):1590-2. doi: 10.1021/np0101550. [PubMed:11754624 ]

Showing NP-Card for Serantrypinone (NP0003957)

MOL for NP0003957 (Serantrypinone)

3D MOL for NP0003957 (Serantrypinone)

3D SDF for NP0003957 (Serantrypinone)

3D-SDF for NP0003957 (Serantrypinone)

PDB for NP0003957 (Serantrypinone)

3D PDB for NP0003957 (Serantrypinone)

SMILES for NP0003957 (Serantrypinone)

INCHI for NP0003957 (Serantrypinone)

Structure for NP0003957 (Serantrypinone)

3D Structure for NP0003957 (Serantrypinone)