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Record Information
Version1.0
Created at2020-12-09 00:53:26 UTC
Updated at2021-07-15 16:47:11 UTC
NP-MRD IDNP0003718
Secondary Accession NumbersNone
Natural Product Identification
Common NameTolybyssidin A
Provided ByNPAtlasNPAtlas Logo
Description(1S)-1-[(3R,6R,9R,12S,15R,18S,21Z,24R,27S,30S,33R,36S,41aS)-18-benzyl-12,15-bis(butan-2-yl)-3-(3-carbamimidamidopropyl)-21-ethylidene-1,4,7,10,13,16,19,22,25,28,31,34-dodecahydroxy-9-[(1R)-1-hydroxyethyl]-30-[(1S)-1-hydroxyethyl]-6-(2-methylpropyl)-37-oxo-24,33,36-tris(propan-2-yl)-3H,6H,9H,12H,15H,18H,21H,24H,27H,30H,33H,36H,37H,39H,40H,41H,41aH-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31,34,37-tridecaazacyclononatriacontan-27-yl]ethyl acetate belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues. Tolybyssidin A is found in Tolypothrix and Tolypothrix byssoidea. It was first documented in 2001 (PMID: 11429991). Based on a literature review very few articles have been published on (1S)-1-[(3R,6R,9R,12S,15R,18S,21Z,24R,27S,30S,33R,36S,41aS)-18-benzyl-12,15-bis(butan-2-yl)-3-(3-carbamimidamidopropyl)-21-ethylidene-1,4,7,10,13,16,19,22,25,28,31,34-dodecahydroxy-9-[(1R)-1-hydroxyethyl]-30-[(1S)-1-hydroxyethyl]-6-(2-methylpropyl)-37-oxo-24,33,36-tris(propan-2-yl)-3H,6H,9H,12H,15H,18H,21H,24H,27H,30H,33H,36H,37H,39H,40H,41H,41aH-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31,34,37-tridecaazacyclononatriacontan-27-yl]ethyl acetate (PMID: 28267306) (PMID: 26389440) (PMID: 26389428) (PMID: 26389376).
Structure
Thumb
Synonyms
ValueSource
(1S)-1-[(3R,6R,9R,12S,15R,18S,21Z,24R,27S,30S,33R,36S,41AS)-18-benzyl-12,15-bis(butan-2-yl)-3-(3-carbamimidamidopropyl)-21-ethylidene-1,4,7,10,13,16,19,22,25,28,31,34-dodecahydroxy-9-[(1R)-1-hydroxyethyl]-30-[(1S)-1-hydroxyethyl]-6-(2-methylpropyl)-37-oxo-24,33,36-tris(propan-2-yl)-3H,6H,9H,12H,15H,18H,21H,24H,27H,30H,33H,36H,37H,39H,40H,41H,41ah-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31,34,37-tridecaazacyclononatriacontan-27-yl]ethyl acetic acidGenerator
Chemical FormulaC71H116N16O17
Average Mass1465.8040 Da
Monoisotopic Mass1464.87044 Da
IUPAC Name(1S)-1-[(3R,6R,9R,12S,15R,18S,21Z,24R,27S,30S,33R,36S,41aS)-18-benzyl-12-[(2R)-butan-2-yl]-15-[(2S)-butan-2-yl]-3-{3-[(diaminomethylidene)amino]propyl}-21-ethylidene-9-[(1R)-1-hydroxyethyl]-30-[(1S)-1-hydroxyethyl]-6-(2-methylpropyl)-1,4,7,10,13,16,19,22,25,28,31,34,37-tridecaoxo-24,33,36-tris(propan-2-yl)-tetracontahydro-1H-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31,34,37-tridecaazacyclononatriacontan-27-yl]ethyl acetate
Traditional Name(1S)-1-[(3R,6R,9R,12S,15R,18S,21Z,24R,27S,30S,33R,36S,41aS)-18-benzyl-12-[(2R)-butan-2-yl]-15-[(2S)-butan-2-yl]-3-{3-[(diaminomethylidene)amino]propyl}-21-ethylidene-9-[(1R)-1-hydroxyethyl]-30-[(1S)-1-hydroxyethyl]-24,33,36-triisopropyl-6-(2-methylpropyl)-1,4,7,10,13,16,19,22,25,28,31,34,37-tridecaoxo-hexacosahydro-2H-pyrrolo[1,2-a]1,4,7,10,13,16,19,22,25,28,31,34,37-tridecaazacyclononatriacontan-27-yl]ethyl acetate
CAS Registry NumberNot Available
SMILES
CCC(C)[C@H]1NC(=O)[C@@H](NC(=O)[C@H](NC(=O)[C@@H](CC(C)C)NC(=O)[C@@H](CCCN=C(N)N)NC(=O)[C@@H]2CCCN2C(=O)[C@@H](NC(=O)[C@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](NC(=O)\C(NC(=O)[C@H](CC2=CC=CC=C2)NC1=O)=C\C)C(C)C)[C@H](C)OC(C)=O)[C@H](C)O)C(C)C)C(C)C)[C@@H](C)O)C(C)CC
InChI Identifier
InChI=1S/C71H116N16O17/c1-18-38(12)53-65(98)78-48(33-44-26-22-21-23-27-44)60(93)75-45(20-3)58(91)79-50(35(6)7)64(97)86-57(42(16)104-43(17)90)69(102)85-56(41(15)89)67(100)80-51(36(8)9)63(96)81-52(37(10)11)70(103)87-31-25-29-49(87)62(95)76-46(28-24-30-74-71(72)73)59(92)77-47(32-34(4)5)61(94)84-55(40(14)88)68(101)83-54(39(13)19-2)66(99)82-53/h20-23,26-27,34-42,46-57,88-89H,18-19,24-25,28-33H2,1-17H3,(H,75,93)(H,76,95)(H,77,92)(H,78,98)(H,79,91)(H,80,100)(H,81,96)(H,82,99)(H,83,101)(H,84,94)(H,85,102)(H,86,97)(H4,72,73,74)/b45-20-/t38?,39?,40-,41+,42+,46-,47-,48+,49+,50-,51-,52+,53-,54+,55-,56+,57+/m1/s1
InChI KeyZWXCBGUTACBDRV-VZVGHHAHSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
TolypothrixNPAtlas
Tolypothrix byssoidea-
Chemical Taxonomy
Description Belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues.
KingdomOrganic compounds
Super ClassOrganic Polymers
ClassPolypeptides
Sub ClassNot Available
Direct ParentPolypeptides
Alternative Parents
Substituents
  • Polypeptide
  • Cyclic alpha peptide
  • Macrolactam
  • Alpha-amino acid or derivatives
  • Monocyclic benzene moiety
  • Benzenoid
  • Pyrrolidine
  • Tertiary carboxylic acid amide
  • Carboxamide group
  • Carboxylic acid ester
  • Guanidine
  • Lactam
  • Secondary alcohol
  • Secondary carboxylic acid amide
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Azacycle
  • Carboximidamide
  • Organoheterocyclic compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Organic oxygen compound
  • Imine
  • Organopnictogen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.87ChemAxon
pKa (Strongest Acidic)10.7ChemAxon
pKa (Strongest Basic)11.37ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count16ChemAxon
Polar Surface Area500.67 ŲChemAxon
Rotatable Bond Count20ChemAxon
Refractivity381.29 m³·mol⁻¹ChemAxon
Polarizability157.53 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA018280
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78438462
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139588191
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Jaki B, Zerbe O, Heilmann J, Sticher O: Two novel cyclic peptides with antifungal activity from the cyanobacterium Tolypothrix byssoidea (EAWAG 195). J Nat Prod. 2001 Feb;64(2):154-8. doi: 10.1021/np000297e. [PubMed:11429991 ]
  2. Authors unspecified: Medicinal Mushrooms (PDQ(R)): Patient Version. 2002. [PubMed:28267306 ]
  3. Authors unspecified: Nutrition in Cancer Care (PDQ(R)): Patient Version. 2002. [PubMed:26389440 ]
  4. Authors unspecified: Lung Cancer Screening (PDQ(R)): Patient Version. 2002. [PubMed:26389428 ]
  5. Authors unspecified: Colorectal Cancer Prevention (PDQ(R)): Patient Version. 2002. [PubMed:26389376 ]