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Record Information
Version1.0
Created at2020-12-09 00:49:25 UTC
Updated at2021-07-15 16:46:56 UTC
NP-MRD IDNP0003627
Secondary Accession NumbersNone
Natural Product Identification
Common NamePlantaricin W
Provided ByNPAtlasNPAtlas Logo
Description Plantaricin W is found in Lactobacillus. It was first documented in 2001 (PMID: 11238971). Based on a literature review very few articles have been published on 2-[(6-amino-2-{[2-({2-[(2-{[2-({6-amino-2-[(2-{[2-amino-1-hydroxy-4-(methylsulfanyl)butylidene]amino}-1,3-dihydroxybutylidene)amino]-1-hydroxyhexylidene}amino)-1,3-dihydroxybutylidene]amino}-1,3-dihydroxypropylidene)amino]-5-carbamimidamido-1-hydroxypentylidene}amino)-5-carbamimidamido-1-hydroxypentylidene]amino}-1-hydroxyhexylidene)amino]-N-[1-({1-[(1-{[2-(C-hydroxycarbonimidoyl)-1-{[2-(4-hydroxyphenyl)-1-[(4-methyl-1-oxopentan-2-yl)-C-hydroxycarbonimidoyl]ethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]-2-methylbutyl}-C-hydroxycarbonimidoyl)ethyl]butanediimidic acid.
Structure
Thumb
Synonyms
ValueSource
2-[(6-Amino-2-{[2-({2-[(2-{[2-({6-amino-2-[(2-{[2-amino-1-hydroxy-4-(methylsulfanyl)butylidene]amino}-1,3-dihydroxybutylidene)amino]-1-hydroxyhexylidene}amino)-1,3-dihydroxybutylidene]amino}-1,3-dihydroxypropylidene)amino]-5-carbamimidamido-1-hydroxypentylidene}amino)-5-carbamimidamido-1-hydroxypentylidene]amino}-1-hydroxyhexylidene)amino]-N-[1-({1-[(1-{[2-(C-hydroxycarbonimidoyl)-1-{[2-(4-hydroxyphenyl)-1-[(4-methyl-1-oxopentan-2-yl)-C-hydroxycarbonimidoyl]ethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]-2-methylbutyl}-C-hydroxycarbonimidoyl)ethyl]butanediimidateGenerator
2-[(6-Amino-2-{[2-({2-[(2-{[2-({6-amino-2-[(2-{[2-amino-1-hydroxy-4-(methylsulphanyl)butylidene]amino}-1,3-dihydroxybutylidene)amino]-1-hydroxyhexylidene}amino)-1,3-dihydroxybutylidene]amino}-1,3-dihydroxypropylidene)amino]-5-carbamimidamido-1-hydroxypentylidene}amino)-5-carbamimidamido-1-hydroxypentylidene]amino}-1-hydroxyhexylidene)amino]-N-[1-({1-[(1-{[2-(C-hydroxycarbonimidoyl)-1-{[2-(4-hydroxyphenyl)-1-[(4-methyl-1-oxopentan-2-yl)-C-hydroxycarbonimidoyl]ethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]-2-methylbutyl}-C-hydroxycarbonimidoyl)ethyl]butanediimidateGenerator
2-[(6-Amino-2-{[2-({2-[(2-{[2-({6-amino-2-[(2-{[2-amino-1-hydroxy-4-(methylsulphanyl)butylidene]amino}-1,3-dihydroxybutylidene)amino]-1-hydroxyhexylidene}amino)-1,3-dihydroxybutylidene]amino}-1,3-dihydroxypropylidene)amino]-5-carbamimidamido-1-hydroxypentylidene}amino)-5-carbamimidamido-1-hydroxypentylidene]amino}-1-hydroxyhexylidene)amino]-N-[1-({1-[(1-{[2-(C-hydroxycarbonimidoyl)-1-{[2-(4-hydroxyphenyl)-1-[(4-methyl-1-oxopentan-2-yl)-C-hydroxycarbonimidoyl]ethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]-2-methylbutyl}-C-hydroxycarbonimidoyl)ethyl]butanediimidic acidGenerator
Chemical FormulaC75H131N25O21S
Average Mass1751.0900 Da
Monoisotopic Mass1749.96721 Da
IUPAC Name(2R)-2-[(2R)-2-[(2R,3S)-2-[(2R)-2-[(2R)-2-[(2R)-6-amino-2-[(2S)-2-{2-[(2R)-2-[(3S)-2-[(2R)-6-amino-2-[(2R,3R)-2-[(2S)-2-amino-4-(methylsulfanyl)butanamido]-3-hydroxybutanamido]hexanamido]-3-hydroxybutanamido]-3-hydroxypropanamido]-5-carbamimidamidopentanamido}-5-carbamimidamidopentanamido]hexanamido]-3-carbamoylpropanamido]propanamido]-3-methylpentanamido]propanamido]-N-[(1R)-2-(4-hydroxyphenyl)-1-{[(2S)-4-methyl-1-oxopentan-2-yl]carbamoyl}ethyl]butanediamide
Traditional Name(2R)-2-[(2R)-2-[(2R,3S)-2-[(2R)-2-[(2R)-2-[(2R)-6-amino-2-[(2S)-2-{2-[(2R)-2-[(3S)-2-[(2R)-6-amino-2-[(2R,3R)-2-[(2S)-2-amino-4-(methylsulfanyl)butanamido]-3-hydroxybutanamido]hexanamido]-3-hydroxybutanamido]-3-hydroxypropanamido]-5-carbamimidamidopentanamido}-5-carbamimidamidopentanamido]hexanamido]-3-carbamoylpropanamido]propanamido]-3-methylpentanamido]propanamido]-N-[(1R)-2-(4-hydroxyphenyl)-1-{[(2S)-4-methyl-1-oxopentan-2-yl]carbamoyl}ethyl]succinamide
CAS Registry NumberNot Available
SMILES
CCC(C)C(NC(=O)C(C)NC(=O)C(CC(N)=O)NC(=O)C(CCCCN)NC(=O)C(CCCNC(N)=N)NC(=O)C(CCCNC(N)=N)NC(=O)C(CO)NC(=O)C(NC(=O)C(CCCCN)NC(=O)C(NC(=O)C(N)CCSC)C(C)O)C(C)O)C(=O)NC(C)C(=O)NC(CC(N)=O)C(=O)NC(CC1=CC=C(O)C=C1)C(=O)NC(CC(C)C)C=O
InChI Identifier
InChI=1S/C75H131N25O21S/c1-10-38(4)57(71(119)88-39(5)60(108)94-53(34-56(80)107)69(117)95-51(32-43-21-23-45(105)24-22-43)68(116)89-44(35-101)31-37(2)3)98-61(109)40(6)87-67(115)52(33-55(79)106)96-65(113)47(17-11-13-26-76)90-63(111)49(19-15-28-85-74(81)82)91-64(112)50(20-16-29-86-75(83)84)92-70(118)54(36-102)97-73(121)59(42(8)104)100-66(114)48(18-12-14-27-77)93-72(120)58(41(7)103)99-62(110)46(78)25-30-122-9/h21-24,35,37-42,44,46-54,57-59,102-105H,10-20,25-34,36,76-78H2,1-9H3,(H2,79,106)(H2,80,107)(H,87,115)(H,88,119)(H,89,116)(H,90,111)(H,91,112)(H,92,118)(H,93,120)(H,94,108)(H,95,117)(H,96,113)(H,97,121)(H,98,109)(H,99,110)(H,100,114)(H4,81,82,85)(H4,83,84,86)
InChI KeyKAYJBPCHVFSMSY-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
LactobacillusNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-12ChemAxon
pKa (Strongest Acidic)9.37ChemAxon
pKa (Strongest Basic)12.2ChemAxon
Physiological Charge5ChemAxon
Hydrogen Acceptor Count30ChemAxon
Hydrogen Donor Count29ChemAxon
Polar Surface Area793.43 ŲChemAxon
Rotatable Bond Count61ChemAxon
Refractivity463.35 m³·mol⁻¹ChemAxon
Polarizability183.16 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA012512
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78444579
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139586573
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Holo H, Jeknic Z, Daeschel M, Stevanovic S, Nes IF: Plantaricin W from Lactobacillus plantarum belongs to a new family of two-peptide lantibiotics. Microbiology (Reading). 2001 Mar;147(Pt 3):643-651. doi: 10.1099/00221287-147-3-643. [PubMed:11238971 ]