Np mrd loader

Record Information
Version1.0
Created at2020-12-09 00:48:45 UTC
Updated at2021-07-15 16:46:53 UTC
NP-MRD IDNP0003611
Secondary Accession NumbersNone
Natural Product Identification
Common NameArgimicin A
Provided ByNPAtlasNPAtlas Logo
Description Argimicin A is found in Sphingomonas sp. It was first documented in 2000 (PMID: 11213296). Based on a literature review very few articles have been published on [(1R)-4-carbamimidamido-1-{[(1S)-1-{[(1R)-1-{[(1S,3R)-1-{[(1S)-1-carboxy-3-(C-hydroxycarbonimidoyl)propyl](methyl)carbamoyl}-3-hydroxy-4-(N'-methylcarbamimidamido)butyl]-C-hydroxycarbonimidoyl}-2-methylpropyl]-C-hydroxycarbonimidoyl}-2-methylpropyl]-C-hydroxycarbonimidoyl}butyl]trimethylazanium.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC32H63N12O8
Average Mass743.9310 Da
Monoisotopic Mass743.48863 Da
IUPAC Name[(1R)-1-{[(1S)-1-{[(1R)-1-{[(1S,3R)-1-{[(1S)-3-carbamoyl-1-carboxypropyl](methyl)carbamoyl}-3-hydroxy-4-[(Z)-N''-methylcarbamimidamido]butyl]carbamoyl}-2-methylpropyl]carbamoyl}-2-methylpropyl]carbamoyl}-4-[(diaminomethylidene)amino]butyl]trimethylazanium
Traditional Name[(1R)-1-{[(1S)-1-{[(1R)-1-{[(1S,3R)-1-{[(1S)-3-carbamoyl-1-carboxypropyl](methyl)carbamoyl}-3-hydroxy-4-[(Z)-N''-methylcarbamimidamido]butyl]carbamoyl}-2-methylpropyl]carbamoyl}-2-methylpropyl]carbamoyl}-4-[(diaminomethylidene)amino]butyl]trimethylazanium
CAS Registry NumberNot Available
SMILES
CN=C(N)NC[C@H](O)C[C@H](NC(=O)[C@H](NC(=O)[C@@H](NC(=O)[C@@H](CCCN=C(N)N)[N+](C)(C)C)C(C)C)C(C)C)C(=O)N(C)[C@@H](CCC(N)=O)C(O)=O
InChI Identifier
InChI=1S/C32H62N12O8/c1-17(2)24(42-28(49)25(18(3)4)41-26(47)22(44(7,8)9)11-10-14-38-31(34)35)27(48)40-20(15-19(45)16-39-32(36)37-5)29(50)43(6)21(30(51)52)12-13-23(33)46/h17-22,24-25,45H,10-16H2,1-9H3,(H12-,33,34,35,36,37,38,39,40,41,42,46,47,48,49,51,52)/p+1/t19-,20+,21+,22-,24-,25+/m1/s1
InChI KeyAJXRMWZKJMAIRX-AMNJKWLFSA-O
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Sphingomonas sp.NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.1ALOGPS
logP-8ChemAxon
logS-4.7ALOGPS
pKa (Strongest Acidic)3.26ChemAxon
pKa (Strongest Basic)11.25ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count14ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area323.04 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity203.53 m³·mol⁻¹ChemAxon
Polarizability79.65 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA020561
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78443822
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139588870
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Imamura N, Motoike I, Noda M, Adachi K, Konno A, Fukami H: Argimicin A, a novel anti-cyanobacterial compound produced by an algae-lysing bacterium. J Antibiot (Tokyo). 2000 Nov;53(11):1317-9. doi: 10.7164/antibiotics.53.1317. [PubMed:11213296 ]