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Record Information
Version1.0
Created at2020-12-09 00:48:24 UTC
Updated at2021-07-15 16:46:51 UTC
NP-MRD IDNP0003602
Secondary Accession NumbersNone
Natural Product Identification
Common NameNukacin ISK-1
Provided ByNPAtlasNPAtlas Logo
Description4-({1-[(1-{[5-Amino-1-({1-[(1-{[5-amino-1-({2-carboxy-1-[(3-methyl-1-oxopentan-2-yl)-C-hydroxycarbonimidoyl]ethyl}-C-hydroxycarbonimidoyl)pentyl]-C-hydroxycarbonimidoyl}-3-(methylsulfanyl)propyl)-C-hydroxycarbonimidoyl]-2-methylpropyl}-C-hydroxycarbonimidoyl)pentyl]-C-hydroxycarbonimidoyl}-2-hydroxyethyl)-C-hydroxycarbonimidoyl]-2-(C-hydroxycarbonimidoyl)ethyl}-C-hydroxycarbonimidoyl)-4-{[2-amino-1-hydroxy-4-(methylsulfanyl)butylidene]amino}butanoic acid belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds. Nukacin ISK-1 is found in Staphylococcus and Staphylococcus warneri. It was first documented in 2000 (PMID: 11193411). Based on a literature review very few articles have been published on 4-({1-[(1-{[5-amino-1-({1-[(1-{[5-amino-1-({2-carboxy-1-[(3-methyl-1-oxopentan-2-yl)-C-hydroxycarbonimidoyl]ethyl}-C-hydroxycarbonimidoyl)pentyl]-C-hydroxycarbonimidoyl}-3-(methylsulfanyl)propyl)-C-hydroxycarbonimidoyl]-2-methylpropyl}-C-hydroxycarbonimidoyl)pentyl]-C-hydroxycarbonimidoyl}-2-hydroxyethyl)-C-hydroxycarbonimidoyl]-2-(C-hydroxycarbonimidoyl)ethyl}-C-hydroxycarbonimidoyl)-4-{[2-amino-1-hydroxy-4-(methylsulfanyl)butylidene]amino}butanoic acid.
Structure
Thumb
Synonyms
ValueSource
4-({1-[(1-{[5-amino-1-({1-[(1-{[5-amino-1-({2-carboxy-1-[(3-methyl-1-oxopentan-2-yl)-C-hydroxycarbonimidoyl]ethyl}-C-hydroxycarbonimidoyl)pentyl]-C-hydroxycarbonimidoyl}-3-(methylsulfanyl)propyl)-C-hydroxycarbonimidoyl]-2-methylpropyl}-C-hydroxycarbonimidoyl)pentyl]-C-hydroxycarbonimidoyl}-2-hydroxyethyl)-C-hydroxycarbonimidoyl]-2-(C-hydroxycarbonimidoyl)ethyl}-C-hydroxycarbonimidoyl)-4-{[2-amino-1-hydroxy-4-(methylsulfanyl)butylidene]amino}butanoateGenerator
4-({1-[(1-{[5-amino-1-({1-[(1-{[5-amino-1-({2-carboxy-1-[(3-methyl-1-oxopentan-2-yl)-C-hydroxycarbonimidoyl]ethyl}-C-hydroxycarbonimidoyl)pentyl]-C-hydroxycarbonimidoyl}-3-(methylsulphanyl)propyl)-C-hydroxycarbonimidoyl]-2-methylpropyl}-C-hydroxycarbonimidoyl)pentyl]-C-hydroxycarbonimidoyl}-2-hydroxyethyl)-C-hydroxycarbonimidoyl]-2-(C-hydroxycarbonimidoyl)ethyl}-C-hydroxycarbonimidoyl)-4-{[2-amino-1-hydroxy-4-(methylsulphanyl)butylidene]amino}butanoateGenerator
4-({1-[(1-{[5-amino-1-({1-[(1-{[5-amino-1-({2-carboxy-1-[(3-methyl-1-oxopentan-2-yl)-C-hydroxycarbonimidoyl]ethyl}-C-hydroxycarbonimidoyl)pentyl]-C-hydroxycarbonimidoyl}-3-(methylsulphanyl)propyl)-C-hydroxycarbonimidoyl]-2-methylpropyl}-C-hydroxycarbonimidoyl)pentyl]-C-hydroxycarbonimidoyl}-2-hydroxyethyl)-C-hydroxycarbonimidoyl]-2-(C-hydroxycarbonimidoyl)ethyl}-C-hydroxycarbonimidoyl)-4-{[2-amino-1-hydroxy-4-(methylsulphanyl)butylidene]amino}butanoic acidGenerator
Chemical FormulaC49H87N13O16S2
Average Mass1178.4300 Da
Monoisotopic Mass1177.58352 Da
IUPAC Name(4R)-4-{[(1R)-1-{[(1S)-1-{[(1S)-5-amino-1-{[(1R)-1-{[(1R)-1-{[(1S)-5-amino-1-{[(1R)-2-carboxy-1-{[(2S,3S)-3-methyl-1-oxopentan-2-yl]carbamoyl}ethyl]carbamoyl}pentyl]carbamoyl}-3-(methylsulfanyl)propyl]carbamoyl}-2-methylpropyl]carbamoyl}pentyl]carbamoyl}-2-hydroxyethyl]carbamoyl}-2-carbamoylethyl]carbamoyl}-4-[(2R)-2-amino-4-(methylsulfanyl)butanamido]butanoic acid
Traditional Name(4R)-4-{[(1R)-1-{[(1S)-1-{[(1S)-5-amino-1-{[(1R)-1-{[(1R)-1-{[(1S)-5-amino-1-{[(1R)-2-carboxy-1-{[(2S,3S)-3-methyl-1-oxopentan-2-yl]carbamoyl}ethyl]carbamoyl}pentyl]carbamoyl}-3-(methylsulfanyl)propyl]carbamoyl}-2-methylpropyl]carbamoyl}pentyl]carbamoyl}-2-hydroxyethyl]carbamoyl}-2-carbamoylethyl]carbamoyl}-4-[(2R)-2-amino-4-(methylsulfanyl)butanamido]butanoic acid
CAS Registry NumberNot Available
SMILES
CCC(C)C(NC(=O)C(CC(O)=O)NC(=O)C(CCCCN)NC(=O)C(CCSC)NC(=O)C(NC(=O)C(CCCCN)NC(=O)C(CO)NC(=O)C(CC(N)=O)NC(=O)C(CCC(O)=O)NC(=O)C(N)CCSC)C(C)C)C=O
InChI Identifier
InChI=1S/C49H87N13O16S2/c1-7-27(4)35(24-63)60-47(76)34(23-39(68)69)59-42(71)29(12-8-10-18-50)55-44(73)32(17-21-80-6)57-49(78)40(26(2)3)62-45(74)30(13-9-11-19-51)56-48(77)36(25-64)61-46(75)33(22-37(53)65)58-43(72)31(14-15-38(66)67)54-41(70)28(52)16-20-79-5/h24,26-36,40,64H,7-23,25,50-52H2,1-6H3,(H2,53,65)(H,54,70)(H,55,73)(H,56,77)(H,57,78)(H,58,72)(H,59,71)(H,60,76)(H,61,75)(H,62,74)(H,66,67)(H,68,69)
InChI KeyHAFVLPSGNZHBMQ-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StaphylococcusNPAtlas
Staphylococcus warneriLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentOligopeptides
Alternative Parents
Substituents
  • Alpha-oligopeptide
  • Glutamic acid or derivatives
  • Aspartic acid or derivatives
  • Asparagine or derivatives
  • Methionine or derivatives
  • N-acyl-alpha amino acid or derivatives
  • Valine or derivatives
  • Alpha-amino acid amide
  • Serine or derivatives
  • N-substituted-alpha-amino acid
  • Alpha-amino acid or derivatives
  • Hydroxy fatty acid
  • Branched fatty acid
  • N-acyl-amine
  • Fatty amide
  • Dicarboxylic acid or derivatives
  • Fatty acid
  • Fatty acyl
  • Secondary carboxylic acid amide
  • Primary carboxylic acid amide
  • Carboxamide group
  • Amino acid or derivatives
  • Amino acid
  • Carboxylic acid
  • Thioether
  • Sulfenyl compound
  • Dialkylthioether
  • Alcohol
  • Primary aliphatic amine
  • Organonitrogen compound
  • Organooxygen compound
  • Organosulfur compound
  • Primary alcohol
  • Primary amine
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Amine
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Aldehyde
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-3.7ALOGPS
logP-10ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)3.4ChemAxon
pKa (Strongest Basic)10.48ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count16ChemAxon
Polar Surface Area494.95 ŲChemAxon
Rotatable Bond Count44ChemAxon
Refractivity292.87 m³·mol⁻¹ChemAxon
Polarizability125.11 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA007347
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78444070
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139585154
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Sashihara T, Kimura H, Higuchi T, Adachi A, Matsusaki H, Sonomoto K, Ishizaki A: A novel lantibiotic, nukacin ISK-1, of Staphylococcus warneri ISK-1: cloning of the structural gene and identification of the structure. Biosci Biotechnol Biochem. 2000 Nov;64(11):2420-8. doi: 10.1271/bbb.64.2420. [PubMed:11193411 ]