Np mrd loader

Showing NP-Card for (2S, 3S, 4R)-2-[(2'R)-2'-hydroxypentacosanoylamino]-1, 3, 4-octadecanetriol (NP0003423)

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Record Information
Version1.0
Created at2020-12-09 00:41:00 UTC
Updated at2021-07-15 16:46:23 UTC
NP-MRD IDNP0003423
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2S, 3S, 4R)-2-[(2'R)-2'-hydroxypentacosanoylamino]-1, 3, 4-octadecanetriol
Provided ByNPAtlasNPAtlas Logo
Description (2S, 3S, 4R)-2-[(2'R)-2'-hydroxypentacosanoylamino]-1, 3, 4-octadecanetriol is found in Grifola, Grifola frondosa and Iotrochota baculifera. It was first documented in 2000 (PMID: 10993238). Based on a literature review very few articles have been published on (2R)-2-hydroxy-N-[(2S,3S,4R)-1,3,4-trihydroxyoctadecan-2-yl]pentacosanimidic acid.
Structure
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MOL3D MOLSDF3D SDFPDBSMILESInChI

MOL for NP0003423 ((2S, 3S, 4R)-2-[(2'R)-2'-hydroxypentacosanoylamino]-1, 3, 4-octadecanetriol)


  Mrv1652307012117093D          

136135  0  0  0  0            999 V2000
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 47130  1  0  0  0  0
 47131  1  0  0  0  0
 48132  1  0  0  0  0
 48133  1  0  0  0  0
 49134  1  0  0  0  0
 49135  1  0  0  0  0
 49136  1  0  0  0  0
M  END
Download

3D MOL for NP0003423 ((2S, 3S, 4R)-2-[(2'R)-2'-hydroxypentacosanoylamino]-1, 3, 4-octadecanetriol)

     RDKit          3D

136135  0  0  0  0  0  0  0  0999 V2000
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M  END
Download

3D SDF for NP0003423 ((2S, 3S, 4R)-2-[(2'R)-2'-hydroxypentacosanoylamino]-1, 3, 4-octadecanetriol)


  Mrv1652307012117093D          

136135  0  0  0  0            999 V2000
   15.5239   -4.2257   -0.7023 C   0  0  0  0  0  0  0  0  0  0  0  0
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 49136  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003423

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@]([H])(N([H])C(=O)[C@]([H])(O[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H])[C@]([H])(O[H])[C@]([H])(O[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C43H87NO5/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-25-27-29-31-33-35-37-41(47)43(49)44-39(38-45)42(48)40(46)36-34-32-30-28-26-16-14-12-10-8-6-4-2/h39-42,45-48H,3-38H2,1-2H3,(H,44,49)/t39-,40+,41+,42-/m0/s1

> <INCHI_KEY>
YADUGDLSXPPFIP-YIEWKAQUSA-N

> <FORMULA>
C43H87NO5

> <MOLECULAR_WEIGHT>
698.171

> <EXACT_MASS>
697.658424905

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
136

> <JCHEM_AVERAGE_POLARIZABILITY>
90.98701531082295

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2-hydroxy-N-[(2S,3S,4R)-1,3,4-trihydroxyoctadecan-2-yl]pentacosanamide

> <ALOGPS_LOGP>
9.51

> <JCHEM_LOGP>
13.126517797666668

> <ALOGPS_LOGS>
-7.02

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.42438895494546

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.696305495085273

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7917255790393964

> <JCHEM_POLAR_SURFACE_AREA>
110.02000000000001

> <JCHEM_REFRACTIVITY>
209.0758

> <JCHEM_ROTATABLE_BOND_COUNT>
40

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.60e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2-hydroxy-N-[(2S,3S,4R)-1,3,4-trihydroxyoctadecan-2-yl]pentacosanamide

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for NP0003423 ((2S, 3S, 4R)-2-[(2'R)-2'-hydroxypentacosanoylamino]-1, 3, 4-octadecanetriol)

     RDKit          3D

136135  0  0  0  0  0  0  0  0999 V2000
   15.5239   -4.2257   -0.7023 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2661   -4.2418    0.7797 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6107   -2.8946    1.3635 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7071   -1.8621    0.6549 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9962   -0.5142    1.1892 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2522    0.6298    0.6599 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8089    0.8139    0.8865 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9375   -0.2714    0.4073 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4448    0.0667    0.5885 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0865    1.3199   -0.1574 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3601    1.2065   -1.6348 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5860    0.1282   -2.3088 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0701    0.3055   -2.2329 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6392    1.5682   -2.8592 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2422    1.9412   -2.9893 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3144    2.1634   -1.8860 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0186    1.0295   -0.9669 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9161    1.5949    0.0316 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6264    0.4955    0.9907 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7222    0.6976    2.0986 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3111    0.9815    2.1212 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5911    2.1250    1.5902 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4855    2.4089    0.1374 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.1970    2.2890   -0.1482 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1079   -0.0212    0.4158 N   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.5051    0.8668    2.0865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6784    0.9374    2.7912 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4739   -0.0207   -0.0961 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -5.8041   -0.6315    0.0120 C   0  0  2  0  0  0  0  0  0  0  0  0
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   12.5392    1.8119    0.4144 H   0  0  0  0  0  0  0  0  0  0  0  0
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   12.1888   -0.6727   -0.5539 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8866   -0.7964    0.2071 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2139    0.2094    1.6560 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5254    2.2101    0.2981 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9759    1.4211   -0.0665 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for NP0003423 ((2S, 3S, 4R)-2-[(2'R)-2'-hydroxypentacosanoylamino]-1, 3, 4-octadecanetriol)

HEADER    PROTEIN                                 01-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   01-JUL-21         0                                  
HETATM    1  C   UNK     0      15.524  -4.226  -0.702  0.00  0.00           C+0
HETATM    2  C   UNK     0      15.266  -4.242   0.780  0.00  0.00           C+0
HETATM    3  C   UNK     0      15.611  -2.895   1.363  0.00  0.00           C+0
HETATM    4  C   UNK     0      14.707  -1.862   0.655  0.00  0.00           C+0
HETATM    5  C   UNK     0      14.996  -0.514   1.189  0.00  0.00           C+0
HETATM    6  C   UNK     0      14.252   0.630   0.660  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.809   0.814   0.887  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.938  -0.271   0.407  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.445   0.067   0.589  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.086   1.320  -0.157  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.360   1.206  -1.635  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.586   0.128  -2.309  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.070   0.306  -2.233  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.639   1.568  -2.859  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.242   1.941  -2.989  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.314   2.163  -1.886  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.019   1.030  -0.967  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.916   1.595   0.032  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.626   0.496   0.991  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.722   0.698   2.099  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.311   0.982   2.121  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.591   2.125   1.590  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.486   2.409   0.137  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.187   1.273  -0.637  0.00  0.00           C+0
HETATM   25  O   UNK     0       0.446   0.079  -0.546  0.00  0.00           O+0
HETATM   26  C   UNK     0      -1.588   1.182  -0.091  0.00  0.00           C+0
HETATM   27  O   UNK     0      -2.197   2.289  -0.148  0.00  0.00           O+0
HETATM   28  N   UNK     0      -2.108  -0.021   0.416  0.00  0.00           N+0
HETATM   29  C   UNK     0      -3.472  -0.158   0.974  0.00  0.00           C+0
HETATM   30  C   UNK     0      -3.505   0.867   2.087  0.00  0.00           C+0
HETATM   31  O   UNK     0      -4.678   0.937   2.791  0.00  0.00           O+0
HETATM   32  C   UNK     0      -4.474  -0.021  -0.096  0.00  0.00           C+0
HETATM   33  O   UNK     0      -4.449   1.232  -0.703  0.00  0.00           O+0
HETATM   34  C   UNK     0      -5.804  -0.632   0.012  0.00  0.00           C+0
HETATM   35  O   UNK     0      -6.363  -0.817  -1.281  0.00  0.00           O+0
HETATM   36  C   UNK     0      -6.823  -0.062   0.913  0.00  0.00           C+0
HETATM   37  C   UNK     0      -7.190   1.357   0.660  0.00  0.00           C+0
HETATM   38  C   UNK     0      -7.785   1.674  -0.659  0.00  0.00           C+0
HETATM   39  C   UNK     0      -9.093   1.007  -0.926  0.00  0.00           C+0
HETATM   40  C   UNK     0     -10.155   1.393   0.075  0.00  0.00           C+0
HETATM   41  C   UNK     0     -11.522   0.734  -0.268  0.00  0.00           C+0
HETATM   42  C   UNK     0     -12.468   1.188   0.781  0.00  0.00           C+0
HETATM   43  C   UNK     0     -13.879   0.869   0.752  0.00  0.00           C+0
HETATM   44  C   UNK     0     -14.447  -0.485   0.760  0.00  0.00           C+0
HETATM   45  C   UNK     0     -14.146  -1.340  -0.410  0.00  0.00           C+0
HETATM   46  C   UNK     0     -14.837  -2.695  -0.275  0.00  0.00           C+0
HETATM   47  C   UNK     0     -16.313  -2.492  -0.222  0.00  0.00           C+0
HETATM   48  C   UNK     0     -17.072  -3.823  -0.127  0.00  0.00           C+0
HETATM   49  C   UNK     0     -18.533  -3.452  -0.084  0.00  0.00           C+0
HETATM   50  H   UNK     0      15.855  -5.211  -1.068  0.00  0.00           H+0
HETATM   51  H   UNK     0      16.300  -3.446  -0.876  0.00  0.00           H+0
HETATM   52  H   UNK     0      14.589  -3.950  -1.223  0.00  0.00           H+0
HETATM   53  H   UNK     0      14.157  -4.367   0.930  0.00  0.00           H+0
HETATM   54  H   UNK     0      15.805  -5.061   1.299  0.00  0.00           H+0
HETATM   55  H   UNK     0      15.476  -2.843   2.444  0.00  0.00           H+0
HETATM   56  H   UNK     0      16.650  -2.632   1.091  0.00  0.00           H+0
HETATM   57  H   UNK     0      15.062  -1.897  -0.431  0.00  0.00           H+0
HETATM   58  H   UNK     0      13.724  -2.271   0.678  0.00  0.00           H+0
HETATM   59  H   UNK     0      14.982  -0.511   2.328  0.00  0.00           H+0
HETATM   60  H   UNK     0      16.108  -0.333   0.976  0.00  0.00           H+0
HETATM   61  H   UNK     0      14.446   0.635  -0.489  0.00  0.00           H+0
HETATM   62  H   UNK     0      14.796   1.604   0.926  0.00  0.00           H+0
HETATM   63  H   UNK     0      12.690   0.976   2.020  0.00  0.00           H+0
HETATM   64  H   UNK     0      12.539   1.812   0.414  0.00  0.00           H+0
HETATM   65  H   UNK     0      12.049  -1.118   1.174  0.00  0.00           H+0
HETATM   66  H   UNK     0      12.189  -0.673  -0.554  0.00  0.00           H+0
HETATM   67  H   UNK     0       9.887  -0.796   0.207  0.00  0.00           H+0
HETATM   68  H   UNK     0      10.214   0.209   1.656  0.00  0.00           H+0
HETATM   69  H   UNK     0      10.525   2.210   0.298  0.00  0.00           H+0
HETATM   70  H   UNK     0       8.976   1.421  -0.067  0.00  0.00           H+0
HETATM   71  H   UNK     0      11.438   0.943  -1.736  0.00  0.00           H+0
HETATM   72  H   UNK     0      10.189   2.155  -2.157  0.00  0.00           H+0
HETATM   73  H   UNK     0       9.815  -0.884  -1.902  0.00  0.00           H+0
HETATM   74  H   UNK     0       9.835   0.119  -3.384  0.00  0.00           H+0
HETATM   75  H   UNK     0       7.775   0.133  -1.204  0.00  0.00           H+0
HETATM   76  H   UNK     0       7.668  -0.555  -2.853  0.00  0.00           H+0
HETATM   77  H   UNK     0       8.072   1.548  -3.926  0.00  0.00           H+0
HETATM   78  H   UNK     0       8.175   2.415  -2.318  0.00  0.00           H+0
HETATM   79  H   UNK     0       6.243   2.920  -3.624  0.00  0.00           H+0
HETATM   80  H   UNK     0       5.714   1.248  -3.754  0.00  0.00           H+0
HETATM   81  H   UNK     0       4.302   2.504  -2.294  0.00  0.00           H+0
HETATM   82  H   UNK     0       5.613   3.077  -1.272  0.00  0.00           H+0
HETATM   83  H   UNK     0       4.629   0.130  -1.436  0.00  0.00           H+0
HETATM   84  H   UNK     0       5.870   0.774  -0.324  0.00  0.00           H+0
HETATM   85  H   UNK     0       3.068   1.753  -0.636  0.00  0.00           H+0
HETATM   86  H   UNK     0       4.307   2.494   0.500  0.00  0.00           H+0
HETATM   87  H   UNK     0       4.635   0.100   1.414  0.00  0.00           H+0
HETATM   88  H   UNK     0       3.329  -0.446   0.383  0.00  0.00           H+0
HETATM   89  H   UNK     0       3.225   1.520   2.790  0.00  0.00           H+0
HETATM   90  H   UNK     0       2.841  -0.235   2.808  0.00  0.00           H+0
HETATM   91  H   UNK     0       0.936   0.899   3.245  0.00  0.00           H+0
HETATM   92  H   UNK     0       0.796  -0.004   1.716  0.00  0.00           H+0
HETATM   93  H   UNK     0      -0.476   2.165   2.012  0.00  0.00           H+0
HETATM   94  H   UNK     0       1.040   3.077   2.073  0.00  0.00           H+0
HETATM   95  H   UNK     0       1.295   2.902  -0.361  0.00  0.00           H+0
HETATM   96  H   UNK     0      -0.366   3.223   0.075  0.00  0.00           H+0
HETATM   97  H   UNK     0      -0.212   1.636  -1.704  0.00  0.00           H+0
HETATM   98  H   UNK     0       0.114  -0.535  -1.246  0.00  0.00           H+0
HETATM   99  H   UNK     0      -1.465  -0.852   0.382  0.00  0.00           H+0
HETATM  100  H   UNK     0      -3.465  -1.189   1.442  0.00  0.00           H+0
HETATM  101  H   UNK     0      -3.180   1.871   1.748  0.00  0.00           H+0
HETATM  102  H   UNK     0      -2.732   0.561   2.876  0.00  0.00           H+0
HETATM  103  H   UNK     0      -4.755   1.791   3.281  0.00  0.00           H+0
HETATM  104  H   UNK     0      -3.988  -0.665  -0.967  0.00  0.00           H+0
HETATM  105  H   UNK     0      -4.749   1.142  -1.658  0.00  0.00           H+0
HETATM  106  H   UNK     0      -5.647  -1.700   0.366  0.00  0.00           H+0
HETATM  107  H   UNK     0      -5.593  -1.075  -1.862  0.00  0.00           H+0
HETATM  108  H   UNK     0      -6.765  -0.288   1.963  0.00  0.00           H+0
HETATM  109  H   UNK     0      -7.797  -0.633   0.606  0.00  0.00           H+0
HETATM  110  H   UNK     0      -6.355   2.071   0.933  0.00  0.00           H+0
HETATM  111  H   UNK     0      -7.966   1.628   1.441  0.00  0.00           H+0
HETATM  112  H   UNK     0      -7.104   1.514  -1.519  0.00  0.00           H+0
HETATM  113  H   UNK     0      -7.996   2.785  -0.665  0.00  0.00           H+0
HETATM  114  H   UNK     0      -9.489   1.331  -1.931  0.00  0.00           H+0
HETATM  115  H   UNK     0      -9.005  -0.106  -1.009  0.00  0.00           H+0
HETATM  116  H   UNK     0      -9.854   1.038   1.084  0.00  0.00           H+0
HETATM  117  H   UNK     0     -10.293   2.490   0.037  0.00  0.00           H+0
HETATM  118  H   UNK     0     -11.802   1.034  -1.288  0.00  0.00           H+0
HETATM  119  H   UNK     0     -11.304  -0.357  -0.282  0.00  0.00           H+0
HETATM  120  H   UNK     0     -12.382   2.326   0.835  0.00  0.00           H+0
HETATM  121  H   UNK     0     -12.052   0.908   1.813  0.00  0.00           H+0
HETATM  122  H   UNK     0     -14.352   1.473  -0.120  0.00  0.00           H+0
HETATM  123  H   UNK     0     -14.353   1.459   1.636  0.00  0.00           H+0
HETATM  124  H   UNK     0     -14.282  -1.026   1.739  0.00  0.00           H+0
HETATM  125  H   UNK     0     -15.587  -0.364   0.763  0.00  0.00           H+0
HETATM  126  H   UNK     0     -14.559  -0.811  -1.316  0.00  0.00           H+0
HETATM  127  H   UNK     0     -13.095  -1.517  -0.646  0.00  0.00           H+0
HETATM  128  H   UNK     0     -14.503  -3.220   0.632  0.00  0.00           H+0
HETATM  129  H   UNK     0     -14.610  -3.338  -1.140  0.00  0.00           H+0
HETATM  130  H   UNK     0     -16.632  -1.951   0.704  0.00  0.00           H+0
HETATM  131  H   UNK     0     -16.723  -1.940  -1.078  0.00  0.00           H+0
HETATM  132  H   UNK     0     -16.798  -4.355   0.804  0.00  0.00           H+0
HETATM  133  H   UNK     0     -16.865  -4.401  -1.045  0.00  0.00           H+0
HETATM  134  H   UNK     0     -19.124  -4.238   0.446  0.00  0.00           H+0
HETATM  135  H   UNK     0     -18.918  -3.304  -1.113  0.00  0.00           H+0
HETATM  136  H   UNK     0     -18.624  -2.473   0.440  0.00  0.00           H+0
CONECT    1    2   50   51   52                                             
CONECT    2    1    3   53   54                                             
CONECT    3    2    4   55   56                                             
CONECT    4    3    5   57   58                                             
CONECT    5    4    6   59   60                                             
CONECT    6    5    7   61   62                                             
CONECT    7    6    8   63   64                                             
CONECT    8    7    9   65   66                                             
CONECT    9    8   10   67   68                                             
CONECT   10    9   11   69   70                                             
CONECT   11   10   12   71   72                                             
CONECT   12   11   13   73   74                                             
CONECT   13   12   14   75   76                                             
CONECT   14   13   15   77   78                                             
CONECT   15   14   16   79   80                                             
CONECT   16   15   17   81   82                                             
CONECT   17   16   18   83   84                                             
CONECT   18   17   19   85   86                                             
CONECT   19   18   20   87   88                                             
CONECT   20   19   21   89   90                                             
CONECT   21   20   22   91   92                                             
CONECT   22   21   23   93   94                                             
CONECT   23   22   24   95   96                                             
CONECT   24   23   25   26   97                                             
CONECT   25   24   98                                                       
CONECT   26   24   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   99                                                  
CONECT   29   28   30   32  100                                             
CONECT   30   29   31  101  102                                             
CONECT   31   30  103                                                       
CONECT   32   29   33   34  104                                             
CONECT   33   32  105                                                       
CONECT   34   32   35   36  106                                             
CONECT   35   34  107                                                       
CONECT   36   34   37  108  109                                             
CONECT   37   36   38  110  111                                             
CONECT   38   37   39  112  113                                             
CONECT   39   38   40  114  115                                             
CONECT   40   39   41  116  117                                             
CONECT   41   40   42  118  119                                             
CONECT   42   41   43  120  121                                             
CONECT   43   42   44  122  123                                             
CONECT   44   43   45  124  125                                             
CONECT   45   44   46  126  127                                             
CONECT   46   45   47  128  129                                             
CONECT   47   46   48  130  131                                             
CONECT   48   47   49  132  133                                             
CONECT   49   48  134  135  136                                             
CONECT   50    1                                                            
CONECT   51    1                                                            
CONECT   52    1                                                            
CONECT   53    2                                                            
CONECT   54    2                                                            
CONECT   55    3                                                            
CONECT   56    3                                                            
CONECT   57    4                                                            
CONECT   58    4                                                            
CONECT   59    5                                                            
CONECT   60    5                                                            
CONECT   61    6                                                            
CONECT   62    6                                                            
CONECT   63    7                                                            
CONECT   64    7                                                            
CONECT   65    8                                                            
CONECT   66    8                                                            
CONECT   67    9                                                            
CONECT   68    9                                                            
CONECT   69   10                                                            
CONECT   70   10                                                            
CONECT   71   11                                                            
CONECT   72   11                                                            
CONECT   73   12                                                            
CONECT   74   12                                                            
CONECT   75   13                                                            
CONECT   76   13                                                            
CONECT   77   14                                                            
CONECT   78   14                                                            
CONECT   79   15                                                            
CONECT   80   15                                                            
CONECT   81   16                                                            
CONECT   82   16                                                            
CONECT   83   17                                                            
CONECT   84   17                                                            
CONECT   85   18                                                            
CONECT   86   18                                                            
CONECT   87   19                                                            
CONECT   88   19                                                            
CONECT   89   20                                                            
CONECT   90   20                                                            
CONECT   91   21                                                            
CONECT   92   21                                                            
CONECT   93   22                                                            
CONECT   94   22                                                            
CONECT   95   23                                                            
CONECT   96   23                                                            
CONECT   97   24                                                            
CONECT   98   25                                                            
CONECT   99   28                                                            
CONECT  100   29                                                            
CONECT  101   30                                                            
CONECT  102   30                                                            
CONECT  103   31                                                            
CONECT  104   32                                                            
CONECT  105   33                                                            
CONECT  106   34                                                            
CONECT  107   35                                                            
CONECT  108   36                                                            
CONECT  109   36                                                            
CONECT  110   37                                                            
CONECT  111   37                                                            
CONECT  112   38                                                            
CONECT  113   38                                                            
CONECT  114   39                                                            
CONECT  115   39                                                            
CONECT  116   40                                                            
CONECT  117   40                                                            
CONECT  118   41                                                            
CONECT  119   41                                                            
CONECT  120   42                                                            
CONECT  121   42                                                            
CONECT  122   43                                                            
CONECT  123   43                                                            
CONECT  124   44                                                            
CONECT  125   44                                                            
CONECT  126   45                                                            
CONECT  127   45                                                            
CONECT  128   46                                                            
CONECT  129   46                                                            
CONECT  130   47                                                            
CONECT  131   47                                                            
CONECT  132   48                                                            
CONECT  133   48                                                            
CONECT  134   49                                                            
CONECT  135   49                                                            
CONECT  136   49                                                            
MASTER        0    0    0    0    0    0    0    0  136    0  270    0
END
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3D PDB for NP0003423 ((2S, 3S, 4R)-2-[(2'R)-2'-hydroxypentacosanoylamino]-1, 3, 4-octadecanetriol)

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SMILES for NP0003423 ((2S, 3S, 4R)-2-[(2'R)-2'-hydroxypentacosanoylamino]-1, 3, 4-octadecanetriol)
[H]OC([H])([H])[C@]([H])(N([H])C(=O)[C@]([H])(O[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H])[C@]([H])(O[H])[C@]([H])(O[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H]
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INCHI for NP0003423 ((2S, 3S, 4R)-2-[(2'R)-2'-hydroxypentacosanoylamino]-1, 3, 4-octadecanetriol)
InChI=1S/C43H87NO5/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-25-27-29-31-33-35-37-41(47)43(49)44-39(38-45)42(48)40(46)36-34-32-30-28-26-16-14-12-10-8-6-4-2/h39-42,45-48H,3-38H2,1-2H3,(H,44,49)/t39-,40+,41+,42-/m0/s1
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View in JSmolView NMR Assignments
Synonyms
ValueSource
(2R)-2-Hydroxy-N-[(2S,3S,4R)-1,3,4-trihydroxyoctadecan-2-yl]pentacosanimidateGenerator
Chemical FormulaC43H87NO5
Average Mass698.1710 Da
Monoisotopic Mass697.65842 Da
IUPAC Name(2R)-2-hydroxy-N-[(2S,3S,4R)-1,3,4-trihydroxyoctadecan-2-yl]pentacosanamide
Traditional Name(2R)-2-hydroxy-N-[(2S,3S,4R)-1,3,4-trihydroxyoctadecan-2-yl]pentacosanamide
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCCCCCCCCCCC[C@@H](O)C(=O)N[C@@H](CO)[C@H](O)[C@H](O)CCCCCCCCCCCCCC
InChI Identifier
InChI=1S/C43H87NO5/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-25-27-29-31-33-35-37-41(47)43(49)44-39(38-45)42(48)40(46)36-34-32-30-28-26-16-14-12-10-8-6-4-2/h39-42,45-48H,3-38H2,1-2H3,(H,44,49)/t39-,40+,41+,42-/m0/s1
InChI KeyYADUGDLSXPPFIP-YIEWKAQUSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
GrifolaNPAtlas
Grifola frondosaLOTUS Database
Iotrochota baculiferaLOTUS Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP9.51ALOGPS
logP13.13ChemAxon
logS-7ALOGPS
pKa (Strongest Acidic)12.7ChemAxon
pKa (Strongest Basic)-2.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area110.02 ŲChemAxon
Rotatable Bond Count40ChemAxon
Refractivity209.08 m³·mol⁻¹ChemAxon
Polarizability90.99 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA005151  
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8755938  
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10580558  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Yaoita Y, Ishizuka T, Kakuda R, Machida K, Kikuchi M: Structures of new ceramides from the fruit bodies of Grifola frondosa. Chem Pharm Bull (Tokyo). 2000 Sep;48(9):1356-8. doi: 10.1248/cpb.48.1356. [PubMed:10993238  ]